Recent PDB releases or updates: week of 28 June 2000

• 1dw0.pdb. oxygen storage/transport 24-jan-00 1dw0 Fe
  Title: structure of oxidized shp, an oxygen binding cytochrome c
  Author: d. leys, k. backers, t. e. meyer, w. r. hagen, m. a. cusanovich, j. j. van beeumen
  Keywords: asparagine ligation, oxygen binding, disulfide bridge
  
• 1es0.pdb. immune system 07-apr-00 1es0
  Title: crystal structure of the murine class ii allele i-a(g7) complexed with the glutamic acid decarboxylase (gad65) peptide 207-220
  Author: a. l. corper, l. teyton, i. a. wilson
  Keywords: class ii mhc i-a(g7)
  
• 1f5p.pdb. oxygen storage/transport 15-jun-00 1f5p Fe
  Title: 2.9 angstrom crystal structure of lamprey hemoglobin that has been exposed to carbon monoxide.
  Author: h. a. heaslet, w. e. royer jr.
  Keywords: hemoglobin, heme, lamprey
  
• 1dzq.pdb. lectin 06-mar-00 1dzq Mn Ca
  Title: lectin uea-ii complexed with galactose
  Author: r. loris, h. de greve, m. -h. dao-thi, j. messens, a. imberty, l. wyns
  Keywords: carbohydrate binding, galactose
  
• 1dw1.pdb. oxygen storage/transport 24-jan-00 1dw1 Fe
  Title: structure of the cyanide complex of shp, an oxygen binding cytochrome c
  Author: d. leys, k. backers, t. e. meyer, w. r. hagen, m. a. cusanovich, j. j. van beeumen
  Keywords: cyanide complex, disulfide bridge, asparagine ligation
  
• 1e01.pdb. hydrolase 08-mar-00 1e01 (NMR, 20 structures)
  Title: lysm domain from e.coli mltd
  Author: a. bateman, m. bycroft
  Keywords: hydrolase, glycosidase, lipoprotein, outer membrane, multigene family
  
• 1qj1.pdb. complex (blood coagulation/inhibitor) 21-jun-99 1qj1
  Title: novel covalent active site thrombin inhibitors
  Author: h. jhoti, a. cleasby, s. reid, p. thomas, m. w. a. wonacott
  Keywords: blood coagulation, trypsin like proteinase, complex (protease/inhibitor)
  
• 1dw2.pdb. oxygen storage/transport 24-jan-00 1dw2 Fe
  Title: structure of the nitric oxide complex of reduced shp, an oxygen binding cytochrome c
  Author: d. leys, k. backers, t. e. meyer, w. r. hagen, m. a. cusanovich, j. j. van beeumen
  Keywords: nitric oxide, disulfide bridge, asparagine ligation
  
• 1f4b.pdb. transferase 07-jun-00 1f4b
  Title: crystal structure of escherichia coli thymidylate synthase
  Author: d. a. erlanson, a. c. braisted, d. r. raphael, m. randal, r. m. stroud, e. gordon, j. a. wells
  
  
• 1f52.pdb. ligase 12-jun-00 1f52 Mn
  Title: crystal structure of glutamine synthetase from salmonella typhimurium co-crystallized with adp
  Author: h. s. gill, d. eisenberg
  Keywords: adp, mpd
  
• 1f5b.pdb. electron transport 13-jun-00 1f5b Fe
  Title: crystal structure of f2h ferredoxin 1 mutant from azotobacter vinelandii at 1.75 angstrom resolution
  Author: k. chen, c. a. bonagura, g. j. tilley, y. s. jung, f. a. armstrong, c. d. stout, b. k. burgess
  Keywords: protein monomer, iron sulfur protein, ferredoxin
  
• 1dw3.pdb. oxygen storage/transport 24-jan-00 1dw3 Fe
  Title: structure of a reduced oxygen binding cytochrome c
  Author: d. leys, k. backers, t. e. meyer, w. r. hagen, m. a. cusanovich, j. j. van beeumen
  Keywords: reduced, disulfide bridge, asparagine ligation
  
• 1d2s.pdb. transport protein 28-sep-99 1d2s Ca
  Title: crystal structure of the n-terminal laminin g-like domain of shbg in complex with dihydrotestosterone
  Author: i. grishkovskaya, g. v. avvakumov, g. sklenar, d. dales, g. l. hammond, y. a. muller
  Keywords: laminin g-like domain, jellyroll, androgen binding protein (abp), sex steroid binding protein (sbp)
  
• 1ezs.pdb. hydrolase/inhibitor 11-may-00 1ezs Ca
  Title: crystal structure of ecotin mutant m84r, w67a, g68a, y69a, d70a bound to rat anionic trypsin ii
  Author: s. a. gillmor, t. takeuchi, s. q. yang, c. s. craik, r. j. fletterick
  Keywords: macromolecular complex, protease inhibitor
  
• 1f4c.pdb. transferase 07-jun-00 1f4c
  Title: crystal structure of e. coli thymidylate synthase covalently modified at c146 with n-[tosyl-d-prolinyl]amino- ethanethiol
  Author: d. a. erlanson, a. c. braisted, d. r. raphael, m. randal, r. m. stroud, e. gordon, j. a. wells
  
  
• 1f5c.pdb. electron transport 13-jun-00 1f5c Fe
  Title: crystal structure of f25h ferredoxin 1 mutant from azotobacter vinelandii at 1.75 angstrom resolution
  Author: k. chen, c. a. bonagura, g. j. tilley, y. s. jung, f. a. armstrong, c. d. stout, b. k. burgess
  Keywords: protein monomer, iron sulfur protein, ferredoxin
  
• 1qj3.pdb. aminotransferase 21-jun-99 1qj3 Na
  Title: crystal structure of 7,8-diaminopelargonic acid synthase in complex with 7-keto-8-aminopelargonic acid
  Author: h. kaeck, j. sandmark, k. j. gibson, y. lindqvist, g. schneider
  Keywords: pyridoxal-5'-phosphate, biotin biosynthesis
  
• 1e1d.pdb. hybrid cluster 02-may-00 1e1d Fe
  Title: hybrid cluster protein from desulfovibrio vulgaris
  Author: a. f. arendsen, s. j. cooper, s. bailey, c. d. garner, w. r. hagen, p. f. lindley
  Keywords: cubane, iron sulfur, prismane, fuscoredoxin
  
• 1f4d.pdb. transferase 07-jun-00 1f4d
  Title: crystal structure of e. coli thymidylate synthase c146s, l143c covalently modified at c143 with n-[tosyl-d- prolinyl]amino-ethanethiol
  Author: d. a. erlanson, a. c. braisted, d. r. raphael, m. randal, r. m. stroud, e. gordon, j. a. wells
  Keywords: l143c covalently modified at c143 with n-[tosyl-d- prolinyl]amino-ethanethiol
  
• 1d5u.pdb. hydrolase 12-oct-99 1d5u (theoretical model)
  Title: molecular model of the mature human cathepsin f
  Author: a. fengler, w. brandt, e. mehler, d. bromme
  Keywords: cathepsin f, papain-like enzyme
  
• 1d6e.pdb. immune system 13-oct-99 1d6e
  Title: crystal structure of hla-dr4 complex with peptidomimetic and seb
  Author: a. swain, r. crowther, u. kammlott
  Keywords: immune system
  
• 1ezu.pdb. hydrolase/inhibitor 11-may-00 1ezu Ca
  Title: ecotin y69f, d70p bound to d102n trypsin
  Author: s. a. gillmor, t. takeuchi, s. q. yang, c. s. craik, r. j. fletterick
  Keywords: protease inhibitor, protein-protein interactions
  
• 1ewu.pdb. hydrolase/hydrolase inhibitor 27-apr-00 1ewu (theoretical model)
  Title: knowledge based model of a serine protease inhibitor of cucurbitaceae family (theoretical model) bound to trypsin.
  Author: a. banerjee, s. chakraborty, s. bhattacharyya
  Keywords: trypsin inhibitor complex, homology modelling
  
• 1f4e.pdb. transferase 07-jun-00 1f4e
  Title: crystal structure of e. coli thymidylate synthase complexed with tosyl-d-proline
  Author: d. a. erlanson, a. c. braisted, d. r. raphael, m. randal, r. m. stroud, e. gordon, j. a. wells
  
  
• 1qj5.pdb. aminotransferase 21-jun-99 1qj5 K
  Title: crystal structure of 7,8-diaminopelargonic acid synthase
  Author: h. kack, j. sandmark, k. j. gibson, y. lindqvist, g. schneider
  Keywords: pyridoxal-5'-phosphate, biotin biosynthesis
  
• 1f4f.pdb. transferase 07-jun-00 1f4f
  Title: crystal structure of e. coli thymidylate synthase complexed with sp-722
  Author: d. a. erlanson, a. c. braisted, d. r. raphael, m. randal, r. m. stroud, e. gordon, j. a. wells
  
  
• 1qj6.pdb. complex (blood coagulation/inhibitor) 21-jun-99 1qj6
  Title: novel covalent active site thrombin inhibitors
  Author: h. jhoti, a. cleasby, s. reid, p. thomas, m. w. a. wonacott
  Keywords: blood coagulation, trypsin like proteinase, complex (protease/inhibitor)
  
• 1dyw.pdb. isomerase(peptidyl-prolyl cis-trans) 10-feb-00 1dyw
  Title: biochemical and structural characterization of a divergent loop cyclophilin from caenorhabditis elegans
  Author: j. dornan, a. p. page, p. taylor, s. y. wu, a. d. winter, h. husi, m. d. walkinshaw
  Keywords: rotamase
  
• 1eq7.pdb. membrane protein 03-apr-00 1eq7
  Title: core structure of the outer membrane lipoprotein from escherichia coli at 1.9 angstrom resolution
  Author: w. shu, j. liu, h. ji, m. lu
  Keywords: outer membrane, protein folding, coiled coil, helix capping
  
• 1e0g.pdb. hydrolase 27-mar-00 1e0g (NMR, 20 structures)
  Title: lysm domain from e.coli mltd
  Author: a. bateman, m. bycroft
  Keywords: hydrolase, glycosidase, lipoprotein, outer membrane, multigene family
  
• 1f4g.pdb. transferase 07-jun-00 1f4g
  Title: crystal structure of e. coli thymidylate synthase complexed with sp-876
  Author: d. a. erlanson, a. c. braisted, d. r. raphael, m. randal, r. m. stroud, e. gordon, j. a. wells
  
  
• 1f5g.pdb. ribonucleic acid 14-jun-00 1f5g (NMR, 26 structures)
  Title: the g7(syn)-g4(anti) structure of r(gcaggcgugc)2
  Author: m. e. burkard, d. h. turner
  Keywords: gg mismatch, conformational exchange, base flipping, syn glycosidic torsion
  
• 1gfw.pdb. hydrolase 16-jun-00 1gfw
  Title: the 2.8 angstrom crystal structure of caspase-3 (apopain or cpp32)in complex with an isatin sulfonamide inhibitor.
  Author: n. o. concha, c. a. janson
  Keywords: caspase inhibitor, caspase-3, apopain, istin sulfonamide
  
• 1qj7.pdb. complex (blood coagulation/inhibitor) 23-jun-99 1qj7
  Title: novel covalent active site thrombin inhibitors
  Author: h. jhoti, a. cleasby, s. reid, p. thomas, m. weir, a. wonacott
  Keywords: blood coagulation, trypsin like proteinase, complex (protease/inhibitor)
  
• 1d5x.pdb. immune system 12-oct-99 1d5x
  Title: x-ray crystal structure of hla-dr4 complexed with dipeptide mimetic and seb
  Author: a. swain, r. crowther, u. kammlott
  Keywords: immune system
  
• 1eux.pdb. hydrolase/hydrolase inhibitor 18-apr-00 1eux (theoretical model)
  Title: model structure of a caricain d158e mutant in complex with e-64c
  Author: s. bhattacharya, a. banerjee
  Keywords: thiol protease, hydrolase
  
• 1f5h.pdb. ribonucleic acid 14-jun-00 1f5h (NMR, 26 structures)
  Title: the g4(syn)-g7(anti) structure of r(gcaggcgugc)2
  Author: m. e. burkard, d. h. turner
  Keywords: gg mismatch, conformational exchange, base flipping, syn glycosidic torsion
  
• 1dpy.pdb. hydrolase 28-dec-99 1dpy Na
  Title: three-dimensional structure of a novel phospholipase a2 from indian common krait at 2.45 a resolution
  Author: g. singh, s. sharma, j. jasti, s. gourinath, p. kumar, t. p. singh
  Keywords: phospholipase a2, crystal structure, refinement
  
• 1ek9.pdb. membrane protein 07-mar-00 1ek9 Se
  Title: 2.1a x-ray structure of tolc: an integral outer membrane protein and efflux pump component from escherichia coli
  Author: v. koronakis, a. j. sharff, e. koronakis, b. luisi, c. hughes
  Keywords: alpha helical barrel, beta barrel
  
• 1d5z.pdb. immune system 12-oct-99 1d5z
  Title: x-ray crystal structure of hla-dr4 complexed with peptidomimetic and seb
  Author: a. swain, r. crowther, u. kammlott
  Keywords: immune system
  
• 1f1z.pdb. dna binding protein 21-may-00 1f1z Cl Mg
  Title: tnsa, a catalytic component of the tn7 transposition system
  Author: a. b. hickman, y. li, s. v. matthew, e. w. may, n. l. craig, f. dyda
  
  
• 1qtj.pdb. sugar binding protein 28-jun-99 1qtj
  Title: crystal structure of limulus polyphemus sap
  Author: a. k. shrive, a. m. metcalfe, j. r. cartwright, t. j. greenhough
  Keywords: physiological doubly-stacked octamer, cyclic octamer, invertebrate lectin
  
• 1egk.pdb. dna/rna 15-feb-00 1egk Mg
  Title: crystal structure of a nucleic acid four-way junction
  Author: j. nowakowski, p. j. shim, c. d. stout, g. f. joyce
  Keywords: nucleic acid, rna-dna complex, 10-23 dna enzyme, ribozyme
  
• 1d5m.pdb. immune system 09-may-00 1d5m
  Title: x-ray crystal structure of hla-dr4 complexed with peptide and seb
  Author: a. l. swain
  Keywords: immune system
  
• 1qnn.pdb. oxidoreductase 20-oct-99 1qnn Fe
  Title: cambialistic superoxide dismutase from porphyromonas gingivalis
  Author: s. sugio, b. y. hiraoka, f. yamakura
  
  
• 1qto.pdb. antibiotic inhibitor 28-jun-99 1qto
  Title: 1.5 a crystal structure of a bleomycin resistance determinant from bleomycin-producing streptomyces verticillus
  Author: y. kawano, t. kumagai, k. muta, y. matoba, j. davies, m. sugiyama