Recent PDB releases or updates: week of 21 June 2000
- 2osp.pdb.
immune system 22-feb-99 2osp
Title: lyme disease antigen ospa in complex with neutralizing antibody fab la-2
Author: w. ding, c. l. lawson
Keywords: lyme disease, antibody fab fragment, neutralizing epitope
- 1hd0.pdb.
rna binding protein 18-may-99 1hd0
(NMR, minimized average structure)
Title: heterogeneous nuclear ribonucleoprotein d0 (hnrnp d0 rbd1), nmr
Author: t. nagata, y. kurihara, g. matsuda, j. saeki, t. kohno, y. yanagida, f. ishikawa, s. uesugi, m. katahira
- 1dj0.pdb.
lyase 30-nov-99 1dj0
Cl
Title: the crystal structure of e. coli pseudouridine synthase i at 1.5 angstrom resolution
Author: p. g. foster, l. huang, d. v. santi, r. m. stroud
Keywords: rna-binding motif, rna-modifying enzyme
- 1df0.pdb.
hydrolase 16-nov-99 1df0
Title: crystal structure of m-calpain
Author: c. m. hosfield, j. s. elce, p. l. davies, z. jia
Keywords: calmodulin, papain, catalytic triad, zymogen activation, calcium, c2 domain, protease, zymogen, calpain
- 1ef0.pdb.
hydrolase 04-feb-00 1ef0
Zn
Title: crystal structure of pi-scei miniprecursor
Author: b. w. poland, m. -q. xu, f. a. quiocho
Keywords: protein splicing, mini-precursor
- 1ez0.pdb.
oxidoreductase 09-may-00 1ez0
Title: crystal structure of the nadp+ dependent aldehyde dehydrogenase from vibrio harveyi.
Author: b. ahvazi, r. coulombe, m. delarge, m. vedadi, l. zhang, e. meighen, a. vrielink
Keywords: nadp+
- 1eu0.pdb.
structural protein 13-apr-00 1eu0
(theoretical model)
Title: theoretical model of the human involucrin (fragment, from 312 to 361 position)
Author: a. v. kajava
Keywords: solenoid, repeat
- 1f10.pdb.
hydrolase 18-may-00 1f10
Title: crystal structure of orthorhombic lysozyme grown at ph 6.5 at 88% relative humidity
Author: b. k. biswal, n. sukumar, m. vijayan
Keywords: enzyme-orthorhombic form, mucopeptide n- acetylmuramyl hydrolase, hen egg-white lysozyme, low humidity
- 1cn0.pdb.
deoxyribonucleic acid 24-may-99 1cn0
Title: crystal structure of d(accct)
Author: j. weil, t. min, y. cheng, s. wang, c. sutherland, n. sinha, c. kang
Keywords: i-motif
- 1c8p.pdb.
membrane protein 05-oct-99 1c8p
(NMR, 20 structures)
Title: nmr structure of the ligand binding domain of the common beta-chain in the gm-csf, il-3 and il-5 receptors
Author: t. d. mulhern, r. j. d'andrea, c. gaunt, l. vandeleur, m. a. vadas, a. f. lopez, g. w. booker, c. j. bagley
Keywords: cytokine receptor, fn3 domain
- 1qhp.pdb.
hydrolase 25-may-99 1qhp
Ca
Title: five-domain alpha-amylase from bacillus stearothermophilus, maltose complex
Author: z. dauter, m. dauter, a. m. brzozowski, s. christensen, t. v. borchert, l. beier, k. s. wilson, g. j. davies
Keywords: glycoside hydrolase, starch degradation
- 1qi0.pdb.
hydrolase 02-jun-99 1qi0
Ca
Title: endoglucanase cel5a from bacillus agaradhaerens in the tetragonal crystal form in complex with cellobiose
Author: a. varrot, m. schulein, g. j. davies
Keywords: cellulose degradation, endoglucanase, glycoshydrolase family 5i
- 9gaa.pdb.
hydrolase 15-jun-99 9gaa
Title: precursor of the t152a mutant glycosylasparaginase from flavobacterium meningosepticum
Author: h. -c. guo, q. xu
Keywords: glycosylasparaginase, n-terminal nucleophile hydrolase, autoproteolysis, mutant
- 1hd1.pdb.
rna binding protein 18-may-99 1hd1
(NMR, 20 structures)
Title: heterogeneous nuclear ribonucleoprotein d0 (hnrnp d0 rbd1), nmr
Author: t. nagata, y. kurihara, g. matsuda, j. saeki, t. kohno, y. yanagida, f. ishikawa, s. uesugi, m. katahira
- 1dlq.pdb.
oxidoreductase 11-dec-99 1dlq
Hg Fe
Title: structure of catechol 1,2-dioxygenase from acinetobacter sp. adp1 inhibited by bound mercury
Author: m. w. vetting, d. h. ohlendorf
Keywords: dioxygenase, mercury, aromatic compound degredation, mixed alpha/beta structure
- 1dm1.pdb.
oxygen storage/transport 13-dec-99 1dm1
Fe
Title: 2.0 a crystal structure of the double mutant h(e7)v, t(e10) r of myoglobin from aplysia limacina
Author: l. federici, c. savino, r. musto, c. travaglini-allocatelli, f. cutruzzola, m. brunori
- 1dmq.pdb.
isomerase 14-dec-99 1dmq
Title: crystal structure of mutant enzyme y32f of ketosteroid isomerase from pseudomonas putida biotype b
Author: d. h. kim, d. s. jang, g. h. nam, b. h. oh, k. y. choi
Keywords: closed barrel, curved b-sheet
- 1dv1.pdb.
ligase 19-jan-00 1dv1
Title: structure of biotin carboxylase (apo)
Author: j. b. thoden, c. z blanchard, h. m. holden, g. w waldrop
Keywords: carboxylase, biotin-dependent
- 1ek1.pdb.
hydrolase 06-mar-00 1ek1
I
Title: crystal structure of murine soluble epoxide hydrolase complexed with ciu inhibitor
Author: m. a. argiriadi, c. morisseau, m. h. goodrow, d. l. dowdy, b. d. hammock, d. w. christianson
Keywords: alpha/beta hydrolase fold, disubstituted urea inhibitor
- 1ecq.pdb.
lyase 25-jan-00 1ecq
Mg
Title: e. coli glucarate dehydratase bound to 4-deoxyglucarate
Author: a. m. gulick, b. k. hubbard, j. a. gerlt, i. rayment
- 1exa.pdb.
gene regulation 02-may-00 1exa
F
Title: enantiomer discrimination illustrated by crystal structures of the human retinoic acid receptor hrargamma ligand binding domain: the complex with the active r-enantiomer bms270394.
Author: b. p. klaholz, a. mitschler, m. belema, c. zusi, d. moras
Keywords: retinoid ligand complexes, antiparallel alpha-helical sandwich fold
- 1ey1.pdb.
transcription 05-may-00 1ey1
(NMR, 15 structures)
Title: solution structure of escherichia coli nusb
Author: a. s. altieri, m. j. mazzulla, d. a. horita, r. h. coats, p. t. wingfield
- 1euq.pdb.
ligase/rna 17-apr-00 1euq
Title: crystal structure of glutaminyl-trna synthetase complexed with a trna-gln mutant and an active-site inhibitor
Author: l. d. sherlin, t. l. bullock, k. j. newberry, r. s. a. lipman, y. -m. hou, b. beijer, b. s. sproat, j. j. perona
Keywords: glutamine, trnagln, e. coli, rna/protein complex
- 1f0a.pdb.
protein binding 15-may-00 1f0a
(NMR, 20 structures)
Title: solution structure of dini
Author: b. e. ramirez, o. n. voloshin, r. d. camerini-otero, a. bax
Keywords: dini, dipolar coupling, liquid crystal, nmr, pf1, reca
- 1f2q.pdb.
immune system 28-may-00 1f2q
Title: crystal structure of the human high-affinity ige receptor
Author: s. c. garman, j. p. kinet, t. s. jardetzky
Keywords: glycoprotein, receptor, ige-binding protein
- 1co1.pdb.
gene regulation 31-may-99 1co1
(NMR, 10 structures)
Title: fold of the cbfa
Author: m. j. berardi, j. h. bushweller
- 1qiq.pdb.
antibiotic biosynthesis 15-jun-99 1qiq
Fe
Title: isopenicillin n synthase from aspergillus nidulans (acmc fe complex)
Author: p. j. rutledge, i. j. clifton, n. burzlaff, p. l. roach, r. m. adlington, j. e. baldwin
Keywords: monocyclic intermediate, oxygenase, penicillin biosynthesis
- 1qjq.pdb.
tonb dependent receptor 29-jun-99 1qjq
Fe Ni
Title: ferric hydroxamate receptor from escherichia coli (fhua)
Author: a. d. ferguson, v. braun, h. -p. fiedler, j. w. coulton, k. diederichs, w. welte
Keywords: ferrichrome-iron receptor, integral outer membrane protein, tonb-dependent receptor, siderophore receptor, active transport, iron transport, siderophore-antibiotic conjugate
- 1dm2.pdb.
cell cycle 13-dec-99 1dm2
Br
Title: human cyclin-dependent kinase 2 complexed with the inhibitor hymenialdisine
Author: a. m. thunnissen, s. -h. kim
Keywords: cell cycle, phosphorylation, cell division, mitosis, inhibition
- 1du2.pdb.
transferase 13-jan-00 1du2
(NMR, 20 structures)
Title: solution structure of the theta subunit of dna polymerase iii
Author: m. a. keniry, h. a. berthon, j. -y. yang, c. s. miles, n. e. dixon
Keywords: alpha helix
- 1dv2.pdb.
ligase 19-jan-00 1dv2
Title: the structure of biotin carboxylase, mutant e288k, complexed with atp
Author: j. b. thoden, c. z. blanchard, h. m. holden, g. l. waldrop
- 1d6b.pdb.
toxin 12-oct-99 1d6b
(NMR, 20 structures)
Title: solution structure of defensin-like peptide-2 (dlp-2) from platypus venom
Author: a. m. torres, g. m. de plater, m. doverskog, l. c birinyi-strachan, g. m. nicholson, c. h. gallagher, p. w. kuchel
Keywords: antiparallel beta-sheet
- 1en2.pdb.
sugar binding protein 20-mar-00 1en2
Title: uda tetrasaccharide complex. crystal structure of urtica dioica agglutinin, a superantigen presented by mhc molecules of class i and class ii
Author: f. a. saul, p. rovira, g. boulot, e. j. m. van damme, w. j. peumans, p. truffa-bachi, g. a. bentley
Keywords: hevein domain, uda, superantigen, saccharide binding
- 1ek2.pdb.
hydrolase 06-mar-00 1ek2
Title: crystal structure of murine soluble epoxide hydrolase complexed with cdu inhibitor
Author: m. a. argiriadi, c. morisseau, m. h. goodrow, d. l. dowdy, b. d. hammock, d. w. christianson
Keywords: alpha/beta hydrolase fold, disubstituted urea inhibitor
- 1ex2.pdb.
structural genomics 28-apr-00 1ex2
Title: crystal structure of bacillus subtilis maf protein
Author: g. minasov, m. teplova, g. c. stewart, e. v. koonin, w. f. anderson, m. egli
- 1ezr.pdb.
hydrolase 11-may-00 1ezr
Ca
Title: crystal structure of nucleoside hydrolase from leishmania major
Author: w. shi, v. l. schramm, s. c. almo
- 1ev2.pdb.
growth factor/growth factor receptor 19-apr-00 1ev2
Title: crystal structure of fgf2 in complex with the extracellular ligand binding domain of fgf receptor 2 (fgfr2)
Author: a. n. plotnikov, s. r. hubbard, j. schlessinger, m. mohammadi
Keywords: b-trefoil fold
- 1e12.pdb.
ion pump 06-apr-00 1e12
K
Title: halorhodopsin, a light-driven chloride pump
Author: m. kolbe, h. besir, l. -o. essen, d. oesterhelt
Keywords: chloride pump, membrane protein, retinal protein, lipids, palmitate, haloarchaea, chloride transport
- 1e1b.pdb.
membrane protein 28-apr-00 1e1b
(NMR, 1 structures)
Title: nmr representative structure of intimin-190 (int190) from enteropathogenic e. coli
Author: s. prasannan, s. j. matthews, m. batchelor, s. daniell, s. reece, g. frankel, g. dougan, i. connerton, g. bloomberg
Keywords: escherichia coli, cell adhesion, outer membrane protein, nmr spectroscopy
- 1e2r.pdb.
enzyme 24-may-00 1e2r
Fe
Title: cytochrome cd1 nitrite reductase, reduced and cyanide bound
Author: v. fulop
Keywords: nitrite reductase, oxidoreductase, denitrification, electron transport, periplasmic, cyanide
- 1f22.pdb.
electron transport 23-may-00 1f22
Fe
(NMR, 35 structures)
Title: a proton-nmr investigation of the fully reduced cytochrome c7 from desulfuromonas acetoxidans. comparison between the reduced and the oxidized forms.
Author: m. assfalg, l. banci, i. bertini, m. bruschi, m. t. giudici-orticoni
- 1f2r.pdb.
dna binding protein 29-may-00 1f2r
(NMR, minimized average structure)
Title: nmr structure of the heterodimeric complex between cad domains of cad and icad
Author: t. otomo, h. sakahira, k. uegaki, s. nagata, t. yamazaki
Keywords: protein-protein complex
- 1f3r.pdb.
immune system 06-jun-00 1f3r
(NMR, minimized average structure)
Title: complex between fv antibody fragment and an analogue of the main immunogenic region of the acetylcholine receptor
Author: j. kleinjung, m. -c. petit, p. orlewski, a. mamalaki, s. -j. tzartos, v. tsikaris, m. sakarellos-daitsiotis, c. sakarellos, m. marraud, m. -t. cung
Keywords: immuno complex, antibody-antigen, beta-turn
- 1qhr.pdb.
blood clotting 26-may-99 1qhr
Title: novel covalent active site thrombin inhibitors
Author: h. jhoti, a. cleasby, s. reid, p. thomas, a. wonacott
Keywords: blood coagulation, trypsin like proteinase, complex (serine protease/inhibitor)
- 1qi2.pdb.
hydrolase 02-jun-99 1qi2
F Ca
Title: endoglucanase cel5a from bacillus agaradhaerens in the tetragonal crystal form in complex with 2',4'-dinitrophenyl 2-deoxy-2-fluoro-b-d-cellotrioside
Author: a. varrot, m. schulein, g. j. davies
Keywords: cellulose degradation, endoglucanase, glycoshydrolase family 5
- 1qir.pdb.
aminotransferase 16-jun-99 1qir
Title: aspartate aminotransferase from escherichia coli, c191y mutation, with bound maleate
Author: c. j. jeffery, l. m. gloss, g. a. petsko, d. ringe
Keywords: pyridoxal phosphate, maleate
- 9gac.pdb.
hydrolase 15-jun-99 9gac
Title: precursor of the t152c mutant glycosylasparaginase from flavobacterium meningosepticum
Author: h. -c. guo, q. xu
Keywords: glycosylasparaginase, n-terminal nucleophile hydrolase, autoproteolysis, mutant
- 2mss.pdb.
rna binding protein 19-may-99 2mss
(NMR, minimized average structure)
Title: musashi1 rbd2, nmr
Author: t. nagata, r. kanno, y. kurihara, s. uesugi, t. imai, s. sakakibara, h. okano, m. katahira
- 1de3.pdb.
hydrolase 12-nov-99 1de3
(NMR, 20 structures)
Title: solution structure of the cytotoxic ribonuclease alpha- sarcin
Author: j. m. perez-canadillas, r. campos-olivas, j. santoro, j. lacadena, a. martinez del pozo, j. g. gavilanes, m. rico, m. bruix
- 1eis.pdb.
sugar binding protein 28-feb-00 1eis
Title: uda uncomplexed form. crystal structure of urtica dioica agglutinin, a superantigen presented by mhc molecules of class i and class ii
Author: f. a. saul, p. rovira, g. boulot, e. j. m. van damme, w. j. peumans, p. truffa-bachi, g. a. bentley
Keywords: hevein domain, uda, superantigen
- 1ej3.pdb.
oxidoreductase 29-feb-00 1ej3
Title: crystal structure of aequorin
Author: j. f. head, s. inouye, k. teranishi, o. shimomura
Keywords: protein- coelenterazine peroxide complex
- 1exc.pdb.
structural genomics 02-may-00 1exc
Na
Title: crystal structure of b. subtilis maf protein complexed with d-(utp)
Author: g. minasov, m. teplova, g. c. stewart, e. v. koonin, w. f. anderson, m. egli
- 1ez3.pdb.
endocytosis/exocytosis 09-may-00 1ez3
Title: crystal structure of the neuronal t-snare syntaxin-1a
Author: j. c. lerman, j. robblee, r. fairman, f. m. hughson
- 1ewc.pdb.
toxin 25-apr-00 1ewc
Zn
Title: crystal structure of zn2+ loaded staphylococcal enterotoxin h
Author: m. hakansson, k. petersson, h. nilsson, g. forsberg, p. bjork, p. antonsson, a. svensson
Keywords: beta-grasp
- 1e03.pdb.
serpin 09-mar-00 1e03
Title: plasma alpha antithrombin-iii and pentasaccharide
Author: a. j. mccoy, l. jin, j. -p. abrahams, r. skinner, r. w. carrell
- 1f03.pdb.
electron transport 14-may-00 1f03
Fe
(NMR, minimized average structure)
Title: solution structure of oxidized bovine microsomal cytochrome b5 mutant (e44a, e48a, e56a, d60a) and its interaction with cytochrome c
Author: y. b. wu, j. lu, c. m. qian, w. x. tang, e. c. li, j. f. wang, y. h. wang, w. h. wang, j. x. lu, y. xie, z. x. huang
Keywords: protein recognition, solution structure, paramagnetic nmr
- 1f2s.pdb.
hydrolase/hydrolase inhibitor 29-may-00 1f2s
Ca
Title: crystal structure of the complex formed between bovine beta- trypsin and mcti-a, a trypsin inhibitor of squash family at 1.8 a resolution
Author: y. zhu, q. huang, m. qian, y. jia, y. tang
Keywords: trypsin
- 1bzs.pdb.
hydrolase 04-nov-98 1bzs
Zn Ca
Title: crystal structure of mmp8 complexed with hmr2909
Author: h. schreuder, v. brachvogel, p. loenze
Keywords: hydroxamate, matrix degradation
- 1cjs.pdb.
ribosome 19-apr-99 1cjs
Title: crystal structure of ribosomal protein l1 from methanococcus jannaschii
Author: n. nevskaya, s. tishchenko, r. fedorov, s. al-karadaghi, a. liljas, a. kraft, w. piendl, m. garber, s. nikonov
Keywords: primary rrna-binding protein, translational repressor
- 1p23.pdb.
membrane protein 17-nov-98 1p23
(NMR, 10 structures)
Title: structure of the dimerized cytoplasmic domain of p23 in solution, nmr, 10 structures
Author: m. weidler, c. reinhard, f. t. wieland, p. roesch
Keywords: protein transport, transmembrane, signal, glycoprotein, vesicular transport, cop, coatomer, golgi stack, solution structure, p24 family, integral membrane protein
- 1qhs.pdb.
transferase 27-may-99 1qhs
Cl
Title: chloramphenicol phosphotransferase in complex with chloramphenicol from streptomyces venezuelae
Author: t. izard
Keywords: antibiotic resistance, phosphorylation, mononucleotide binding fold
- 1qis.pdb.
aminotransferase 16-jun-99 1qis
Title: aspartate aminotransferase from escherichia coli, c191f mutation, with bound maleate
Author: c. j. jeffery, l. m. gloss, g. a. petsko, d. ringe
Keywords: pyridoxal phosphate, maleate
- 1qkc.pdb.
tonb dependent receptor 18-jul-99 1qkc
Fe Ni
Title: escherichia coli ferric hydroxamate uptake receptor (fhua) in complex delta two-albomycin
Author: a. d. ferguson, v. braun, h. p. fiedler, j. w. coulton, k. diederichs, w. welte
Keywords: integral outer membrane protein, ferrichrome, siderophore receptor, antibiotic, albomycin, active transporter, iron transport protein
- 1qvc.pdb.
dna binding protein 07-jul-99 1qvc
Title: crystal structure analysis of single stranded dna binding protein (ssb) from e.coli
Author: t. matsumoto, y. morimoto, n. shibata, n. shimamoto, t. tsukihara, n. yasuoka
Keywords: single stranded dna binding protein
- 1qpc.pdb.
transferase 21-may-99 1qpc
Title: structural analysis of the lymphocyte-specific kinase lck in complex with non-selective and src family selective kinase inhibitors
Author: x. zhu, j. l. kim, p. e. rose, d. r. stover, l. m. toledo, h. zhao, k. a. morgenstern
- 1qq3.pdb.
electron transport 10-jun-99 1qq3
Fe
(NMR, minimized average structure)
Title: the solution structure of the heme binding variant arg98cys of oxidized escherichia coli cytochrome b562
Author: f. arnesano, l. banci, i. bertini, s. ciofi-baffoni, p. d. barker, t. woodyear
Keywords: hemoprotein, electron transport
- 1qr3.pdb.
hydrolase/hydrolase inhibitor 18-jun-99 1qr3
Ca
Title: structure of porcine pancreatic elastase in complex with fr901277, a novel macrocyclic inhibitor of elastases at 1.6 angstrom resolution
Author: i. nakanishi, t. kinoshita, a. sato, t. tada
- 419d.pdb.
dna/rna 12-aug-98 419d
Title: octamer 5'-r(*gp*up*ap*up*ap*cp*a)-d(p*c)-3' with six watson-crick base-pairs and two 3' overhang residues
Author: s. m. mitra, k. shi, r. biswas, m. sundaralingam
Keywords: superhelices
- 2mst.pdb.
rna binding protein 19-may-99 2mst
(NMR, 20 structures)
Title: musashi1 rbd2, nmr
Author: t. nagata, r. kanno, y. kurihara, s. uesugi, t. imai, s. sakakibara, h. okano, m. katahira
- 1dlt.pdb.
oxidoreductase 12-dec-99 1dlt
Fe
Title: structure of catechol 1,2-dioxygenase from acinetobacter sp. adp1 with bound catechol
Author: m. w. vetting, d. h. ohlendorf
Keywords: dioxygenase, aromatic hydrocarbon degredation, alpha/beta motif, substrate
- 1d0t.pdb.
ribonucleic acid 14-sep-99 1d0t
(NMR, 10 structures)
Title: solution structure of a phosphorothioate modified rna binding site for phage ms2 coat protein
Author: j. s. smith, e. p. nikonowicz
Keywords: phosphorothioate, thiophosphate, bulged base, stem-loop
- 1d2d.pdb.
ligase 23-sep-99 1d2d
(NMR, 5 structures)
Title: hamster eprs second repeated element; nmr, 15 structures
Author: b. cahuzac, e. berthonneau, n. birlirakis, e. guittet, m. mirande
Keywords: protein transcription
- 1ef4.pdb.
transferase 07-feb-00 1ef4
Zn
(NMR, 20 structures)
Title: solution structure of the essential rna polymerase subunit rpb10 from methanobacterium thermoautotrophicum
Author: c. d. mackereth, c. h. arrowsmith, a. m. edwards, l. p. mcintosh
Keywords: zinc binding
- 1ex4.pdb.
virus/viral protein 28-apr-00 1ex4
Title: hiv-1 integrase catalytic core and c-terminal domain
Author: j. c. -h. chen, j. krucinski, l. j. w. miercke, a. d. leavitt, r. m. stroud
Keywords: nonspecific dna binding beta sheet, cis- proline
- 1evt.pdb.
growth factor/growth factor receptor 20-apr-00 1evt
Title: crystal structure of fgf1 in complex with the extracellular ligand binding domain of fgf receptor 1 (fgfr1)
Author: a. n. plotnikov, s. r. hubbard, j. schlessinger, m. mohammadi
Keywords: b-trefoil fold
- 1e04.pdb.
serpin 09-mar-00 1e04
Title: plasma beta antithrombin-iii
Author: a. j. mccoy, r. skinner, j. -p. abrahams, x. y. pei, r. w. carrell
- 1e0d.pdb.
ligase 24-mar-00 1e0d
Title: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase
Author: e. fanchon, j. bertrand, l. chantalat, o. dideberg
Keywords: peptidoglycan synthesis, murd, adp-forming enzyme
- 1e14.pdb.
photosynthetic reaction center 18-apr-00 1e14
Mg Fe
Title: photosynthetic reaction center mutant with phe m197 replaced with arg (chain m, fm197r) and gly m203 replaced with asp (chain m, gm203d)
Author: p. k. fyfe, j. p. ridge, k. e. mcauley, r. j. cogdell, n. w. isaacs, m. r. jones
Keywords: transmembrane, electron transport, photosynthesis
- 1f04.pdb.
electron transport 14-may-00 1f04
Fe
(NMR, 35 structures)
Title: solution structure of oxidized bovine microsomal cytochrome b5 mutant (e44a, e48a, e56a, d60a) and its interaction with cytochrome c
Author: y. b. wu, j. lu, c. m. qian, w. x. tang, e. c. li, j. f. wang, y. h. wang, w. h. wang, j. x. lu, y. xie, z. x. huang
Keywords: protein recognition, solution structure, paramagnetic nmr
- 1f0d.pdb.
antimicrobial protein 16-may-00 1f0d
(NMR, 20 structures)
Title: cecropin a(1-8)-magainin 2(1-12) in dodecylphosphocholine micelles
Author: d. oh, s. y. shin, s. lee, y. kim
- 1qht.pdb.
transferase 26-may-99 1qht
Title: dna polymerase from thermococcus sp. 9on-7 archaeon
Author: h. -w. park, a. c. rodriguez, l. s. beese
Keywords: archaea, hyperthermostable, family b polymerase, pol alpha family polymerase
- 1qit.pdb.
aminotransferase 15-jun-99 1qit
Title: aspartate aminotransferase from escherichia coli, c191w mutation, with bound maleate
Author: c. j. jeffery, l. m. gloss, g. a. petsko, d. ringe
Keywords: pyridoxal phosphate, maleate
- 1qpd.pdb.
transferase 24-may-99 1qpd
Title: structural analysis of the lymphocyte-specific kinase lck in complex with non-selective and src family selective kinase inhibitors
Author: x. zhu, j. l. kim, p. e. rose, d. r. stover, l. m. toledo, h. zhao, k. a. morgenstern
- 1dke.pdb.
oxygen storage/transport 07-dec-99 1dke
Fe
Title: ni beta heme human hemoglobin
Author: s. bruno, s. bettatti, a. mozzarelli, m. bolognesi, d. deriu, c. rosano, a. tsuneshige, t. yonetani, e. r. henry
- 1dee.pdb.
immune system 15-nov-99 1dee
Title: crystal structure at 2.7a resolution of a complex between a staphylococcus aureus domain and a fab fragment of a human igm antibody
Author: m. graille, e. a. stura, a. l. corper, b. j. sutton, m. j. taussig, j. b. charbonnier, g. j. silverman
- 1dbu.pdb.
structural genomics, unknown function 03-nov-99 1dbu
Hg Se
Title: crystal structure of ybak protein from h. influenzae (hi1434)
Author: h. zhang, k. huang, z. li, o. herzberg
Keywords: unknown function, hypothetical protein, ybak
- 1dzu.pdb.
lyase (aldehyde) 07-mar-00 1dzu
Zn
Title: l-fuculose-1-phosphate aldolase from escherichia coli mutant t26a
Author: a. c. joerger, g. e. schulz
Keywords: bacterial l-fucose metabolism, cleavage of l-fuculose-1-phosphate to dihydroxyacetonephosphate and l-lactaldehyde, mutant structure
- 1d0u.pdb.
ribonucleic acid 14-sep-99 1d0u
(NMR, 23 structures)
Title: solution structure of an rna binding site for phage ms2 coat protein
Author: j. s. smith, e. p. nikonowicz
Keywords: bulged base, stem-loop
- 1d1e.pdb.
neuropeptide 15-sep-99 1d1e
(NMR, 20 structures)
Title: solution structure of lactam-bridged c-terminal analogue-ii of neuropeptide y
Author: s. yao, r. s. norton
Keywords: helix
- 1ez5.pdb.
deoxyribonucleic acid 10-may-00 1ez5
Na
(theoretical model)
Title: computer model of a covalent complex between d(taaagctta) and antitumor drug ecteinascidin 743
Author: r. garcia-nieto, i. manzanares, c. cuevas, f. gago
Keywords: dna, ecteinascidin, deoxyribonucleic acid
- 1ete.pdb.
cytokine 12-apr-00 1ete
Zn
Title: crystal structure of the flt3 ligand
Author: s. n. savvides, t. boone, p. a. karplus
- 1e05.pdb.
serpin 08-mar-00 1e05
Title: plasma alpha antithrombin-iii
Author: a. j. mccoy, r. skinner, j. -p. abrahams, x. y. pei, r. w. carrell
- 1f0e.pdb.
antimicrobial protein 16-may-00 1f0e
(NMR, 20 structures)
Title: cecropin a(1-8)-magainin 2(1-12) modified gig to p in dodecylphosphocholine micelles
Author: d. oh, s. y. shin, s. lee, y. kim
- 1f15.pdb.
virus/viral protein 18-may-00 1f15
Title: cucumber mosaic virus (strain fny)
Author: t. j. smith, e. chase, t. schmidt, k. perry
Keywords: beta barrel
- 1f2e.pdb.
transferase 24-may-00 1f2e
Title: structure of sphingomonad, glutathione s-transferase complexed with glutathione
Author: t. nishio, t. watanabe, a. patel, y. wang, p. c. k. lau, p. grochulski, y. li, m. cygler
Keywords: thioredoxin superfamily fold
- 1f3e.pdb.
transferase 02-jun-00 1f3e
Zn
Title: a new target for shigellosis: rational design and crystallographic studies of inhibitors of trna-guanine transglycosylase
Author: u. graedler, h. -d. gerber, d. m. goodenough-lashua, g. a. g. garcia, r. ficner, k. reuter, m. t. stubbs, g. klebe
Keywords: glycosyltransferase
- 1qme.pdb.
peptidoglycan synthesis 28-sep-99 1qme
Title: penicillin-binding protein 2x (pbp-2x)
Author: e. j. gordon, n. mouz, e. duee, o. dideberg
Keywords: resistance, cell wall, transmembrane
- 1qde.pdb.
gene regulation 20-may-99 1qde
Title: crystal structure of the atpase domain of translation initiation factor 4a from saccharomyces cerevisiae-the prototype of the dead box protein family
Author: j. benz, h. trachsel, u. baumann
Keywords: saccharomyces cerevisiae, dead box protein family
- 1qpe.pdb.
transferase 24-may-99 1qpe
Cl
Title: structural analysis of the lymphocyte-specific kinase lck in complex with non-selective and src family selective kinase inhibitors
Author: x. zhu, k. a. morgenstern
- 1qqu.pdb.
hydrolase 09-jun-99 1qqu
Ca
Title: crystal structure of porcine beta trypsin with bound acetate ion
Author: a. johnson, n. gautham, v. pattabhi
Keywords: hydrolase
- 1qr5.pdb.
signaling protein 19-may-99 1qr5
(NMR, 10 structures)
Title: solution structure of histidine containing protein (hpr) from staphylococcus carnosus
Author: h. r. kalbitzer, a. gorler, h. li, p. v. dubovskii, w. hengstenberg, c. kowolik, h. yamada, k. akasaka
- 9gaf.pdb.
hydrolase 15-jun-99 9gaf
Title: precursor of the w11f mutant glycosylasparaginase from flavobacterium meningosepticum
Author: h. -c. guo, q. xu
Keywords: glycosylasparaginase, n-terminal nucleophile hydrolase, autoproteolysis, mutant
- 1dbf.pdb.
isomerase 02-nov-99 1dbf
Title: chorismate mutase from bacillus subtilis at 1.30 angstrom
Author: g. l. gilliland, j. e. ladner
Keywords: shikimate pathway
- 1dzf.pdb.
rna polymerase 25-feb-00 1dzf
Title: rpb5 from s.cerevisiae
Author: f. todone, r. o. j. weinzierl, p. brick, s. onesti
- 1dzv.pdb.
lyase (aldehyde) 03-mar-00 1dzv
Zn
Title: l-fuculose-1-phosphate aldolase from escherichia coli mutant y113f/y209f
Author: a. c. joerger, g. e. schulz
Keywords: bacterial l-fucose metabolism, cleavage of l-fuculose-1-phosphate to dihydroxyacetonephosphate and l-lactaldehyde, mutant structure
- 1dpf.pdb.
gene regulation/signaling protein 27-dec-99 1dpf
Title: crystal structure of a mg-free form of rhoa complexed with gdp
Author: t. shimizu, k. ihara, r. maesaki, s. kuroda, k. kaibuchi, t. hakoshima
- 1d1f.pdb.
neuropeptide 15-sep-99 1d1f
(NMR, 20 structures)
Title: solution structure of lactam-bridged c-terminal analogue- iii of neuropeptide y
Author: s. yao, r. s. norton
Keywords: helix
- 1ejf.pdb.
chaperone 02-mar-00 1ejf
Title: crystal structure of the human co-chaperone p23
Author: a. j. weaver, w. p. sullivan, s. j. felts, b. a. l. owen, d. o. toft
Keywords: co-chaperone, beta-sandwich
- 1eyv.pdb.
transcription 09-may-00 1eyv
Title: the crystal structure of nusb from mycobacterium tuberculosis
Author: b. gopal, l. f. haire, r. a. cox, m. j. colston, s. major, j. a. brannigan, s. j. smerdon, g. g. dodson
- 1euv.pdb.
hydrolase 17-apr-00 1euv
Title: x-ray structure of the c-terminal ulp1 protease domain in complex with smt3, the yeast ortholog of sumo.
Author: e. mossessova, c. d. lima
Keywords: ubiquitin-like protease 1, smt3 hydrolase desumoylating enzyme, cysteine protease, sumo processing enzyme, smt3 processing enzyme, nabh4, thiohemiacetal, covalent protease adduct
- 1ewf.pdb.
antibiotic 25-apr-00 1ewf
Title: the 1.7 angstrom crystal structure of bpi
Author: g. kleiger, l. j. beamer, r. grothe, p. mallick, d. eisenberg
Keywords: permeability-increasing, lipid-binding, lipopolysaccharide-binding, antibiotic
- 1eq6.pdb.
protein transport 03-apr-00 1eq6
Title: 1.9 angstrom resolution crystal structure of the saccharomyces cerevisiae ran-binding protein mog1p
Author: m. stewart, r. p. baker
- 1eqf.pdb.
transcription 04-apr-00 1eqf
Title: crystal structure of the double bromodomain module from human tafii250
Author: r. h. jacobson, a. g. ladurner, d. s. king, r. tjian
Keywords: acetylated histone-tail binding protein
- 1e16.pdb.
hydrolase 23-apr-00 1e16
(theoretical model)
Title: beta subunit of mitochondrial f1-atpase from sorghum line cs3541 fertility restorer of a1-male sterile cytoplasm
Author: p. jaiswal
Keywords: atpb, f1-atpsynthase, mitochondria, sorghum,
- 1f0f.pdb.
antitumor protein 16-may-00 1f0f
(NMR, 20 structures)
Title: cecropin a(1-8)-magainin 2(1-12) gig deletion modification in dodecylphosphocholine micelles
Author: d. oh, s. y. shin, s. lee, y. kim
- 1cs6.pdb.
cell adhesion 17-aug-99 1cs6
Title: n-terminal fragment of axonin-1 from chicken
Author: j. freigang, k. proba, k. diederichs, p. sonderegger, w. welte
- 1qmf.pdb.
peptidoglycan synthesis 24-sep-99 1qmf
Title: penicillin-binding protein 2x (pbp-2x) acyl-enzyme complex
Author: e. j. gordon, n. mouz, e. duee, o. dideberg
Keywords: resistance, cell wall, transmembrane
- 1dzg.pdb.
serpin 28-feb-00 1dzg
Title: n135q-s380c-antithrombin-iii
Author: a. j. mccoy, j. a. huntington, r. w. carrell
- 1dzw.pdb.
lyase (aldehyde) 03-mar-00 1dzw
Zn
Title: l-fuculose-1-phosphate aldolase from escherichia coli mutant f131a
Author: a. c. joerger, g. e. schulz
Keywords: bacterial l-fucose metabolism, cleavage of l-fuculose-1-phosphate to dihydroxyacetonephosphate and l-lactaldehyde, mutant structure
- 1d0w.pdb.
neuropeptide 14-sep-99 1d0w
(NMR, 20 structures)
Title: solution structure of lactam-bridged c-terminal analogue-i of neuropeptide y
Author: s. yao, r. s. norton
Keywords: helix
- 1ed7.pdb.
hydrolase 27-jan-00 1ed7
(NMR, 30 structures)
Title: solution structure of the chitin-binding domain of bacillus circulans wl-12 chitinase a1
Author: t. ikegami, t. okada, m. hashimoto, s. seino, t. watanabe, m. shirakawa
- 1efw.pdb.
ligase/rna 10-feb-00 1efw
Title: crystal structure of aspartyl-trna synthetase from thermus thermophilus complexed to trnaasp from escherichia coli
Author: c. briand, a. poterszman, s. eiler, g. webster, j. -c. thierry, d. moras
Keywords: trna, protein/rna complex, ligase/rna
- 1ec7.pdb.
lyase 25-jan-00 1ec7
Mg
Title: e. coli glucarate dehydratase native enzyme
Author: a. m. gulick, b. k. hubbard, j. a. gerlt, i. rayment
- 1esg.pdb.
hydrolase/dna 09-apr-00 1esg
Title: restriction endonuclease bamhi bound to a non-specific dna.
Author: h. viadiu, a. k. aggarwal
- 1f0g.pdb.
antimicrobial protein 16-may-00 1f0g
(NMR, 20 structures)
Title: cecropin a(1-8)-magainin 2(1-12) l2 in dodecylphosphocholine micelles
Author: d. oh, s. y. shin, s. lee, y. kim
- 1f0w.pdb.
hydrolase 17-may-00 1f0w
Title: crystal structure of orthorhombic lysozyme grown at ph 6.5
Author: b. k. biswal, n. sukumar, m. vijayan
Keywords: enzyme-orthorhombic form, mucopeptide n- acetylmuramyl hydrolase, hen egg-white lysozyme
- 1f27.pdb.
ribonucleic acid 23-may-00 1f27
Mg
Title: crystal structure of a biotin-binding rna pseudoknot
Author: j. nix, d. sussman, c. wilson
Keywords: pseudoknot, biotin-binding rna
- 1f2w.pdb.
lyase 30-may-00 1f2w
Hg Zn
Title: the mechanism of cyanamide hydration catalyzed by carbonic anhydrase ii revealed by cryogenic x-ray diffraction
Author: a. guerri, f. briganti, a. scozzafava, c. t. supuran, s. mangani
- 1qow.pdb.
lantibiotic 19-nov-99 1qow
Title: mersacidin from bacillus
Author: t. r. schneider, j. kaercher, g. m. sheldrick
Keywords: methicillin resistance, staphylococcus aureus, ab initio structure solution, merohedral twinning, thioether, aba-s-cys, beta-methyllanthionine
- 1qi7.pdb.
hydrolase 08-jun-99 1qi7
Title: the crystal structure at 2.0 a of saporin so6, a ribosome inactivating protein from saponaria officinalis
Author: c. savino, l. federici, r. ippoliti, e. lendaro, d. tsernoglou
Keywords: n-glycosidase
- 1dmh.pdb.
oxidoreductase 14-dec-99 1dmh
Fe
Title: structure of catechol 1,2-dioxygenase from acinetobacter sp. adp1 with bound 4-methylcatechol
Author: m. w. vetting, d. h. ohlendorf
Keywords: aromatic hydrocarbon degradation, alpha/beta fold, metalloenzyme, substrate
- 1dbx.pdb.
structural genomics, unknown function 03-nov-99 1dbx
Se
Title: crystal structure of ybak protein from h. influenzae (hi1434)
Author: h. zhang, k. huang, z. li, o. herzberg
Keywords: unknown function, hypothetical protein, ybak
- 1dxx.pdb.
structural protein 19-jan-00 1dxx
Title: n-terminal actin-binding domain of human dystrophin
Author: f. l. norwood, a. j. sutherland-smith, n. h. keep, j. kendrick-jones
Keywords: muscular dystrophy, calponin homology domain, actin-binding, utrophin
- 1dzh.pdb.
serpin 28-feb-00 1dzh
Title: p14-fluorescein-n135q-s380c-antithrombin-iii
Author: a. j. mccoy, j. a. huntington, r. w. carrell
- 1dzx.pdb.
lyase (aldehyde) 03-mar-00 1dzx
Zn
Title: l-fuculose-1-phosphate aldolase from escherichia coli mutant r212a
Author: a. c. joerger, g. e. schulz
Keywords: bacterial l-fucose metabolism, cleavage of l-fuculose-1-phosphate to dihydroxyacetonephosphate and l-lactaldehyde, mutant structure
- 1du8.pdb.
membrane protein 14-jan-00 1du8
(NMR, minimized average structure)
Title: collagen-like domain deleted rat surfactant protein a (sp-a)
Author: n. palaniyar, f. x. mccormack, f. possmayer, g. harauz
- 1ef8.pdb.
lyase 07-feb-00 1ef8
Ni
Title: crystal structure of methylmalonyl coa decarboxylase
Author: m. m. benning, t. haller, j. a. gerlt, h. m. holden
Keywords: decarboxylase
- 1efx.pdb.
immune system 10-feb-00 1efx
Title: structure of a complex between the human natural killer cell receptor kir2dl2 and a class i mhc ligand hla-cw3
Author: j. c. boyington, s. a. motyka, p. schuck, a. g. brooks, p. d. sun
Keywords: hla, class i, kir, nk cell receptor, immunoglobulin fold, receptor/mhc complex
- 1ec8.pdb.
lyase 25-jan-00 1ec8
Mg
Title: e. coli glucarate dehydratase bound to product 2,3- dihydroxy-5-oxo-hexanedioate
Author: a. m. gulick, b. k. hubbard, j. a. gerlt, i. rayment
- 1exx.pdb.
gene regulation 05-may-00 1exx
F
Title: enantiomer discrimination illustrated by crystal structures of the human retinoic acid receptor hrargamma ligand binding domain: the complex with the inactive s-enantiomer bms270395.
Author: b. p. klaholz, a. mitschler, m. belema, c. zusi, d. moras
Keywords: retinoid ligand complexes, antiparallel alpha-helical sandwich fold
- 1eyh.pdb.
cell cycle 06-may-00 1eyh
Title: crystal structure of the epsin n-terminal homology (enth) domain at 1.56 angstrom resolution
Author: d. h. fremont
- 1ezh.pdb.
deoxyribonucleic acid 10-may-00 1ezh
(theoretical model)
Title: computer model of a covalent complex between d(taacggtta) and antitumor drug ecteinascidin 743
Author: r. garcia-nieto, i. manzanares, c. cuevas, f. gago
Keywords: dna, ecteinascidin, deoxyribonucleic acid, dna bending
- 1e18.pdb.
oxidoreductase 28-apr-00 1e18
Title: tungsten-susbstituted dmso reductase from rhodobacter capsulatus
Author: s. bailey, l. j. stewart
Keywords: reductase, dmso, molybdopterin, molybdenum, tungsten
- 1f0h.pdb.
antimicrobial protein 16-may-00 1f0h
(NMR, 20 structures)
Title: cecropin a(1-8)-magainin 2(1-12) a2 in dodecylphosphocholine micelles
Author: d. oh, s. y. shin, s. lee, y. kim
- 1f2x.pdb.
immune system 30-may-00 1f2x
Title: structure of the single-domain camelid antibody cab-ca05
Author: k. decanniere, s. muyldermans, l. wyns
- 1qhx.pdb.
transferase 31-may-99 1qhx
Mg
Title: chloramphenicol phosphotransferase in complex with atp from streptomyces venezuelae
Author: t. izard
Keywords: antibiotic resistance, phosphorylation, mononucleotide binding fold
- 1qk8.pdb.
tryparedoxin 09-jul-99 1qk8
Title: tryparedoxin-i from crithidia fasciculata
Author: m. s. alphey, w. n. hunter
Keywords: crithidia fasciculata, thioredoxin, trypanosome, anomalous dispersion, oxidative stress, oxidoreductase
- 3lri.pdb.
growth factor 13-apr-99 3lri
(NMR, 15 structures)
Title: solution structure and backbone dynamics of human long- [arg3]insulin-like growth factor 1
Author: l. g. laajoki, g. l. francis, j. c. wallace, j. a. carver, m. a. keniry
Keywords: growth factor, nmr, protein structure, distance geometry
- 1dli.pdb.
oxidoreductase 09-dec-99 1dli
Title: the first structure of udp-glucose dehydrogenase (udpgdh) reveals the catalytic residues necessary for the two-fold oxidation
Author: r. e. campbell, s. c. mosimann, i. van de rijn, m. e. tanner, n. c. j. strynadka
Keywords: ternary complex, crystallographic dimer
- 1dzy.pdb.
lyase (aldehyde) 03-mar-00 1dzy
Zn
Title: l-fuculose-1-phosphate aldolase from escherichia coli mutant e214a
Author: a. c. joerger, g. e. schulz
Keywords: bacterial l-fucose metabolism, cleavage of l-fuculose-1-phosphate to dihydroxyacetonephosphate and l-lactaldehyde, mutant structure
- 1dw9.pdb.
lyase 03-dec-99 1dw9
Cl Se
Title: structure of cyanase reveals that a novel dimeric and decameric arrangement of subunits is required for formation of the enzyme active site
Author: m. a. walsh, z. otwinowski, a. perrakis, p. m. anderson, a. joachimiak
Keywords: cyanate degradation
- 1emi.pdb.
ribosome 16-mar-00 1emi
Title: structure of 16s rrna in the region around ribosomal protein s8.
Author: l. lancaster, g. m. culver, g. z. yusupova, j. h. cate, m. m. yuspov, h. f. noller
Keywords: rrna, ribosome, ribosomal protein, 16s rrna, s8
- 1ehi.pdb.
ligase 21-feb-00 1ehi
Mg
Title: d-alanine:d-lactate ligase (lmddl2) of vancomycin-resistant leuconostoc mesenteroides
Author: a. p. kuzin, t. sun, j. jorczak-baillass, v. l. healy, c. t. walsh, j. r. knox
- 1ef9.pdb.
lyase 07-feb-00 1ef9
Title: the crystal structure of methylmalonyl coa decarboxylase complexed with 2s-carboxypropyl coa
Author: m. m. benning, t. haller, j. a. gerlt, h. m. holden
Keywords: 2s-carboxypropyl
- 1eg9.pdb.
oxidoreductase 15-feb-00 1eg9
Fe
Title: naphthalene 1,2-dioxygenase with indole bound in the active site.
Author: e. carredano, a. karlsson, b. kauppi, d. choudhury, r. e. parales, j. v. parales, k. lee, d. t. gibson, h. eklund, s. ramaswamy
Keywords: enzyme-substrate complex
- 1ec9.pdb.
lyase 25-jan-00 1ec9
Mg
Title: e. coli glucarate dehydratase bound to xylarohydroxamate
Author: a. m. gulick, b. k. hubbard, j. a. gerlt, i. rayment
- 1eyy.pdb.
oxidoreductase 09-may-00 1eyy
Title: crystal structure of the nadp+ dependent aldehyde dehydrogenase from vibrio harveyi.
Author: b. ahvazi, r. coulombe, m. delarge, m. vedadi, l. zhang, e. meighen, a. vrielink
- 1euy.pdb.
ligase/rna 19-apr-00 1euy
Title: glutaminyl-trna synthetase complexed with a trna mutant and an active site inhibitor
Author: l. d. sherlin, t. l. bullock, k. j. newberry, r. s. a. lipman, y. -m. hou, b. beijer, b. s. sproat, j. j. perona
Keywords: glutamine, trnagln, e. coli, complex
- 1es9.pdb.
hydrolase 07-apr-00 1es9
Title: x-ray crystal structure of r22k mutant of the mammalian brain platelet-activating factor acetylhydrolases (paf-ah)
Author: t. mcmullen, j. li, p. sheffield, j. aoki, t. martin, h. arai, k. inoue, z. derewenda
- 1esy.pdb.
ribonucleic acid 11-apr-00 1esy
(NMR, 20 structures)
Title: nmr structure of stem loop sl2 of the hiv-1 psi rna packaging signal reveals a novel a-u-a base-triple platform
Author: g. k. amarasinghe, r. n. de guzman, r. b. turner, m. f. summers
Keywords: rna, nmr structure, splice-donor site, platform motif
- 1e0i.pdb.
lectin binding 29-mar-00 1e0i
Mn Ca
Title: concanavalin a, new crystal form
Author: b. rupp, p. hoechtl, s. ringhofer, b. segelke
- 1e1i.pdb.
hydrolase 09-may-00 1e1i
(theoretical model)
Title: beta subunit of mitochondrial f1-atpase from sorghum line 2077a (contains a1-type cytoplasmic male sterile cytoplasm)
Author: p. jaiswal
Keywords: atpb, f1-atpsynthase, mitochondria, sorghum,
- 1e1y.pdb.
glycogen phosphorylase 11-may-00 1e1y
Cl
Title: lavopiridol inhibits glycogen phosphorylase by binding at the inhibitor site
Author: n. g. oikonomakos, s. e. zographos, v. t. skamnaki, k. e. tsitsanou, l. n. johnson
Keywords: allosteric inhibition, x-ray crystallography, inhibitor site, glycogen phosphorylase
- 1c9y.pdb.
transferase 03-aug-99 1c9y
Title: human ornithine transcarbamylase: crystallographic insights into substrate recognition and catalytic mechanism
Author: d. shi, x. yu, h. morizono, m. tuchman, n. m. allewell
Keywords: substrate recognition, catalytic mechanism
- 1qh9.pdb.
hydrolase 12-may-99 1qh9
Title: enzyme-product complex of l-2-haloacid dehalogenase
Author: y. -f. li, y. hata, t. fujii, t. kurihara, n. esaki
Keywords: enzyme-product complex
- 1qhy.pdb.
transferase 01-jun-99 1qhy
Cl Mg
Title: chloramphenicol phosphotransferase from streptomyces venezuelae in complex with atpgammas and chloramphenicol
Author: t. izard
Keywords: antibiotic resistance, phosphorylation, mononucleotide binding fold, transferase
- 1qi9.pdb.
oxidoreductase 10-jun-99 1qi9
I V
Title: x-ray siras structure determination of a vanadium-dependent haloperoxidase from ascophyllum nodosum at 2.0 a resolution
Author: m. weyand, h. -j. hecht, m. kiess, m. f. liaud, h. vilter, d. schomburg
Keywords: vanadium, haloperoxidase
- 1qqi.pdb.
transcription 07-jun-99 1qqi
(NMR, minimized average structure)
Title: solution structure of the dna-binding and transactivation domain of phob from escherichia coli
Author: h. okamura, s. hanaoka, a. nagadoi, k. makino, y. nishimura
- 1qqy.pdb.
hydrolase 09-jun-99 1qqy
Title: x-ray crystal structure analysis of canine milk lysozyme (apo-type)
Author: t. koshiba, m. yao, i. tanaka, k. nitta
Keywords: calcium binding lysozyme, enzyme
- 1dlj.pdb.
oxidoreductase 09-dec-99 1dlj
Title: the first structure of udp-glucose dehydrogenase (udpgdh) reveals the catalytic residues necessary for the two-fold oxidation
Author: r. e. campbell, s. c. mosimann, i. van de rijn, m. e. tanner, n. c. j. strynadka
Keywords: ternary complex, crystallographic dimer
- 1dzz.pdb.
lyase (aldehyde) 07-mar-00 1dzz
Zn
Title: l-fuculose-1-phosphate aldolase from escherichia coli mutant y113f
Author: a. c. joerger, g. e. schulz
Keywords: bacterial l-fucose metabolism, cleavage of l-fuculose-1-phosphate to dihydroxyacetonephosphate and l-lactaldehyde, mutant structure
- 1ekj.pdb.
lyase 08-mar-00 1ekj
Cl Cu Zn
Title: the x-ray crystallographic structure of beta carbonic anhydrase from the c3 dicot pisum sativum
Author: m. s. kimber, e. f. pai
Keywords: strand exchange
- 1e0j.pdb.
helicase 30-mar-00 1e0j
Mg
Title: gp4d helicase from phage t7 adpnp complex
Author: m. r. singleton, m. r. sawaya, t. ellenberger, d. b. wigley
Keywords: atpase, dna replication
- 1f4j.pdb.
oxidoreductase 07-jun-00 1f4j
Fe
Title: structure of tetragonal crystals of human erythrocyte catalase
Author: m. k. safo, f. n. musayev, s. h. wu, d. j. abraham, t. p. ko
Keywords: no bound nadph
- 1qnz.pdb.
antibody 26-oct-99 1qnz
(NMR, minimized average structure)
Title: nmr structure of the 0.5b anti-hiv antibody complex with the gp120 v3 peptide
Author: v. tugarinov, a. zvi, r. levy, y. hayek, s. matsushita, j. anglister
Keywords: v3 peptide, binding site
- 1qhz.pdb.
hydrolase 02-jun-99 1qhz
Ca
Title: native tetragonal structure of the endoglucanase cel5a from bacillus agaradhaerens
Author: a. varrot, m. schulein, g. j. davies
Keywords: cellulose degradation, endoglucanase, glycoshydrolase family 5
- 1qpj.pdb.
transferase 25-may-99 1qpj
Title: crystal structure of the lymphocyte-specific kinase lck in complex with staurosporine.
Author: x. zhu, j. l. kim, p. e. rose, d. r. stover, l. m. toledo
- 1qqj.pdb.
hydrolase 07-jun-99 1qqj
Ca As
Title: crystal structure of mouse fumarylacetoacetate hydrolase refined at 1.55 angstrom resolution
Author: d. e. timm, h. a. mueller, p. bhanumoorthy, j. m. harp, g. j. bunick
Keywords: hydrolase
- 1dwk.pdb.
lyase 07-dec-99 1dwk
Se
Title: structure of cyanase with the di-anion oxalate bound at the enzyme active site
Author: m. a. walsh, z. otwinowski, a. perrakis, p. m. anderson, a. joachimiak
Keywords: cyanate degradation
- 1eik.pdb.
transferase 25-feb-00 1eik
(NMR, 10 structures)
Title: solution structure of rna polymerase subunit rpb5 from methanobacterium thermoautotrophicum
Author: a. yee, v. booth, a. dharamsi, a. engel, a. m. edwards, c. h. arrowsmith
Keywords: rpbh, rna polymerase subunit
- 1ezk.pdb.
electron transport 11-may-00 1ezk
Title: crystal structure of recombinant tryparedoxin i
Author: b. hofmann, s. a. guerrero, h. m. kalisz, u. menge, e. nogoceke, m. montemartini, m. singh, l. flohe, h. -j. hecht
- 1e0k.pdb.
helicase 30-mar-00 1e0k
Title: gp4d helicase from phage t7
Author: m. r. singleton, m. r. sawaya, t. ellenberger, d. b. wigley
Keywords: atpase, dna replication
- 1f2k.pdb.
structural protein 26-may-00 1f2k
Title: crystal structure of acanthamoeba castellanii profilin ii, cubic crystal form
Author: a. a. fedorov, w. shi, n. mahoney, d. a. kaiser, s. c. almo
Keywords: actin-binding protein, poly-l-proline binding protein, pip2 binding protein
- 1c8k.pdb.
transferase 11-may-00 1c8k
Cl
Title: flavopiridol inhibits glycogen phosphorylase by binding at the inhibitor site
Author: n. g. oikonomakos, s. e. zographos, v. t. skamnaki, k. e. tsitsanou, l. n. johnson
Keywords: glycogen phosphorylase b, inhibition, inhibitor binding site, antitumour agent, transferase
- 3pfl.pdb.
lyase/transferase 14-may-99 3pfl
Title: crystal structure of pfl from e.coli in complex with substrate analogue oxamate
Author: a. becker, k. fritz-wolf, w. kabsch, j. knappe, s. schultz, a. f. v. wagner
Keywords: transferase, glucose metabolism
- 1eyl.pdb.
hydrolase inhibitor 07-may-00 1eyl
Title: structure of a recombinant winged bean chymotrypsin inhibitor
Author: j. k. dattagupta, c. chakrabarti, s. ravichandran, s. ghosh
- 1eul.pdb.
hydrolase 17-apr-00 1eul
Ca
Title: crystal structure of calcium atpase with two bound calcium ions
Author: m. nakasako, c. toyoshima, h. nomura, h. ogawa
Keywords: calcium, membrane protein, p-type atpase, active transport
- 1e0l.pdb.
sh3 domain 30-mar-00 1e0l
(NMR, 10 structures)
Title: fbp28ww domain from mus musculus
Author: m. j. macias, v. gervais, c. civera, h. oschkinat
Keywords: fbp28, signal transduction
- 1e1l.pdb.
oxidoreductase 09-may-00 1e1l
Title: structure of adrenodoxin reductase in complex with nadp obtained by cocrystallisation
Author: g. a. ziegler, g. e. schulz
Keywords: nadp, electron transferase, flavoenzyme
- 1c8l.pdb.
transferase 16-may-00 1c8l
Cl
Title: synergistic inhibition of glycogen phosphorylase a by a potential antidiabetic drug and caffeine
Author: k. e. tsitsanou, v. t. skamnaki, n. g. oikonomakos
Keywords: diabetes, phosphorylase a, synergistic inhibition, allosteric site, inhibitor site
- 1dlm.pdb.
oxidoreductase 11-dec-99 1dlm
Fe
Title: structure of catechol 1,2-dioxygenase from acinetobacter calcoaceticus native data
Author: m. w. vetting, d. h. ohlendorf
Keywords: dioxygenase, aromatic compound degradation, mixed alpha helix/ beta strand
- 1dmm.pdb.
isomerase 14-dec-99 1dmm
Title: crystal structures of mutant enzymes y57f of ketosteroid isomerase from pseudomonas putida biotype b
Author: d. h. kim, d. s. jang, g. h. nam, b. h. oh, k. y. choi
Keywords: closed barrel, curved b-sheet
- 1enm.pdb.
sugar binding protein 21-mar-00 1enm
Title: uda trisaccharide complex. crystal structure of urtica dioica agglutinin, a superantigen presented by mhc molecules of class i and class ii
Author: f. a. saul, p. rovira, g. boulot, e. j. m. van damme, w. j. peumans, p. truffa-bachi, g. a. bentley
Keywords: hevein domain, uda, superantigen, saccharide binding
- 1exm.pdb.
translation 03-may-00 1exm
Mg
Title: crystal structure of thermus thermophilus elongation factor tu (ef-tu) in complex with the gtp analogue gppnhp.
Author: t. hogg, j. r. mesters, r. hilgenfeld
Keywords: molecular switch, trna, ribosome, q-beta replicase, chaperone, disulfide isomerase
- 1evm.pdb.
deoxyribonucleic acid 20-apr-00 1evm
(NMR, 8 structures)
Title: nmr observation of a-tetrad
Author: p. k. patel, a. s. r. koti, r. v. hosur
Keywords: g-quadruplex, human telomere, nmr structure
- 1e0m.pdb.
sh3 prototype 01-apr-00 1e0m
(NMR, 10 structures)
Title: prototype ww domain
Author: m. j. macias, v. gervais, c. civera, h. oschkinat
Keywords: protein design
- 1qhm.pdb.
lyase/transferase 19-may-99 1qhm
Title: escherichia coli pyruvate formate lyase large domain
Author: v. -m. leppanen, m. c. merckel, d. l. ollis, k. k. wong, j. w. kozarich, a. goldman
Keywords: anaerobic, x-ray crystallography, homodimer, enzyme mechanism
- 1dmn.pdb.
isomerase 14-dec-99 1dmn
Title: crystal structure of mutant enzyme y32f/y57f of ketosteroid isomerase from pseudomonas putida biotype b
Author: d. h. kim, d. s. jang, g. h. nam, b. h. oh, k. y. choi
Keywords: closed barrel, curved b-sheet
- 1dbn.pdb.
sugar binding protein 03-nov-99 1dbn
Mn Ca
Title: maackia amurensis leukoagglutinin (lectin) with sialyllactose
Author: a. imberty, c. gautier, j. lescar, r. loris
Keywords: carbohydrate binding, sialyllactose
- 1eyn.pdb.
transferase 07-may-00 1eyn
Title: structure of mura liganded with the extrinsic fluorescence probe ans
Author: e. schonbrunn, s. eschenburg, k. luger, w. kabsch, n. amrhein
- 1evn.pdb.
deoxyribonucleic acid 20-apr-00 1evn
(NMR, 7 structures)
Title: nmr observation of a-tetrad
Author: p. k. patel, a. s. r. koti, r. v. hosur
Keywords: human telomere, g-quadruplex, dna, nmr structure
- 1e0n.pdb.
yjq8ww domain 01-apr-00 1e0n
(NMR, 10 structures)
Title: yjq8ww domain from saccharomyces cerevisae
Author: m. j. macias, v. gervais, c. civera, h. oschkinat
Keywords: saccharomyces cerevisae, yjq8 protein
- 1cnn.pdb.
toxin 20-may-99 1cnn
(NMR, 17 structures)
Title: omega-conotoxin mviic from conus magus
Author: k. j. nielsen, d. adams, l. thomas, t. bond, p. f. alewood, d. j. craik, r. j. lewis
Keywords: peptide hybrids
- 1qhn.pdb.
transferase 23-may-99 1qhn
Se
Title: chloramphenicol phosphotransferase from streptomyces venezuelae
Author: t. izard
Keywords: antibiotic resistance, phosphorylation, mononucleotide binding fold
- 1qcn.pdb.
hydrolase 14-may-99 1qcn
Ni Ca Se
Title: crystal structure of fumarylacetoacetate hydrolase
Author: d. e. timm, h. a. mueller, p. bhanumoorthy, j. m. harp, g. j. bunick
- 1dzo.pdb.
type iv pilin 06-mar-00 1dzo
Title: truncated pak pilin from pseudomonas aeruginosa
Author: b. hazes, r. j. read
Keywords: lectin, adhesin
- 1eio.pdb.
lipid-binding protein 27-feb-00 1eio
(NMR, 5 structures)
Title: ileal lipid binding protein in complex with glycocholate
Author: c. luecke, f. zhang, j. a. hamilton, j. c. sacchettini, h. rueterjans
Keywords: protein-ligand interaction
- 1efo.pdb.
dna/rna 09-feb-00 1efo
Title: crystal structure of an adenine bulge in the rna chain of a dna/rna hybrid, d(ctcctcttc)/r(gaagagagag)
Author: c. sudarsanakumar, y. xiong, m. sundaralingam
Keywords: a-form conformation, hybrid, adenine bulge, looped out
- 1qho.pdb.
hydrolase 25-may-99 1qho
Ca
Title: five-domain alpha-amylase from bacillus stearothermophilus, maltose/acarbose complex
Author: z. dauter, m. dauter, a. m. brzozowski, s. christensen, t. v. borchert, l. beier, k. s. wilson, g. j. davies
Keywords: glycoside hydrolase, starch degradation
- 1qco.pdb.
hydrolase 17-may-99 1qco
Ni Ca
Title: crystal structure of fumarylacetoacetate hydrolase complexed with fumarate and acetoacetate
Author: d. e. timm, h. a. mueller, p. bhanumoorthy, j. m. harp, g. j. bunick
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Metalloprotein Structure and Design project home page:
www.scripps.edu/research/metallo
Computational Center for Macromolecular Structure home page:
www.sdsc.edu/CCMS