Recent PDB releases or updates: week of 10 May 2000
- 1en0.pdb.
transcription 20-mar-00 1en0
Mg Zn
Title: crystallographic backbone model of rna polymerase ii
Author: p. cramer, d. a. bushnell, j. fu, a. l. gnatt, b. maier-davis, n. e. thompson, r. r. burgess, a. m. edwards, p. r. david, r. d. kornberg
Keywords: multi-protein complex, gene expression
- 1eo0.pdb.
transcription 21-mar-00 1eo0
(NMR, 10 structures)
Title: conserved domain common to transcription factors tfiis, elongin a, crsp70
Author: v. booth, c. koth, a. m. edwards, c. h. arrowsmith
- 1eup.pdb.
oxidoreductase 17-apr-00 1eup
Fe
Title: x-ray crystal structure of cytochrome p450eryf with androstendione bound
Author: j. r. cupp-vickery, r. anderson, z. hatziris
Keywords: steroid, androstenedione, cytochrome p450eryf
- 1evp.pdb.
dna, rna 20-apr-00 1evp
Title: crystal structure of the chimerical decamer d(ccactagtg)r(g)
Author: m. c. wahl, m. sundaralingam
Keywords: b-dna, dna-rna chimera, nucleic acid structure, structural conversion, x-ray crystallography
- 1ew0.pdb.
transferase 21-apr-00 1ew0
Fe
Title: crystal structure analysis of the sensor domain of rmfixl(ferrous form)
Author: h. miyatake, s. y. park
Keywords: heme protein, histidine kinase, rhizobium meliloti
- 1ql0.pdb.
endonuclease 18-aug-99 1ql0
Mg
Title: sm endonuclease from seratia marcenscens at atomic resolution
Author: m. perbandt, a. m. mikhailov, c. h. betzel
Keywords: hydrolase, nuclease, magnesium, signal
- 1qb0.pdb.
hydrolase 29-apr-99 1qb0
Cl
Title: human cdc25b catalytic domain
Author: k. d. watenpaugh, r. a. reynolds
Keywords: cell cycle phosphatase, dual specificity protein phosphatase, cdc25, cdc25b
- 1ef1.pdb.
membrane protein 04-feb-00 1ef1
Se
Title: crystal structure of the moesin ferm domain/tail domain complex
Author: m. a. pearson, d. reczek, a. bretscher, p. a. karplus
Keywords: membrane, ferm domain, tail domain
- 1ew1.pdb.
deoxyribonucleic acid 21-apr-00 1ew1
(NMR, 10 structures)
Title: reca protein-bound single-stranded dna
Author: t. nishinaka, y. ito, s. yokoyama, t. shibata
Keywords: single-stranded dna
- 1ewa.pdb.
oxidoreductase 24-apr-00 1ewa
I Fe
Title: dehaloperoxidase + 4-iodophenol
Author: m. w. lacount, e. zhang, y. p. chen, k. han, m. m. whitton, d. e. lincoln, s. a. woodin, l. lebioda
Keywords: globin
- 1erq.pdb.
hydrolase 06-apr-00 1erq
B
Title: x-ray crystal structure of tem-1 beta lactamase in complex with a designed boronic acid inhibitor (1r)-1-acetamido-2- (3-carboxy-2-hydroxyphenyl)ethyl boronic acid
Author: s. ness, r. martin, a. m. kindler, m. paetzel, m. gold, j. b. jones, n. c. j. strynadka
Keywords: structure-based design, boronate inhibitor
- 1cvq.pdb.
dna binding protein 24-aug-99 1cvq
(NMR, 7 structures)
Title: solution structure of the analogue retro-inverso mgregriggc in contact with the monoclonal antibody mab 4x11, nmr, 7 structures
Author: a. phan chan du, m. c. petit, g. guichard, j. p. briand, s. muller, m. t. cung
Keywords: synthetic peptide, retro-inverso analogue, tr-noe, antigen- antibody complex
- 1qgq.pdb.
transferase 04-may-99 1qgq
Mg Mn
Title: udp-manganese complex of spsa from bacillus subtilis
Author: s. j. charnock
- 1qb1.pdb.
hydrolase 28-apr-99 1qb1
F Ca
Title: bovine trypsin with 1-[2-[5-[amino(imino)methyl]-2- hydroxyphenoxy]-6-[3-(4,5-dihydro-1-methyl-1h-imidazol-2-yl) phenoxy]pyridin-4-yl]piperidine-3-carboxylic acid (zk- 806974)
Author: m. whitlow
Keywords: serine proteinase, protein-inhibitor complex, s1 pocket, factor xa
- 1d6r.pdb.
hydrolase 15-oct-99 1d6r
Title: crystal structure of cancer chemopreventive bowman-birk inhibitor in ternary complex with bovine trypsin at 2.3 a resolution. structural basis of janus-faced serine protease inhibitor specificity
Author: j. koepke, u. ermler, g. wenzl, p. flecker
Keywords: serine protease, bowman-birk inhibitor
- 1em2.pdb.
lipid binding protein 14-mar-00 1em2
Se
Title: star-related lipid transport domain of mln64
Author: y. tsujishita, j. h. hurley
- 1es2.pdb.
hydrolase 07-apr-00 1es2
Title: s96a mutant of streptomyces k15 dd-transpeptidase
Author: e. fonze, p. charlier
Keywords: dd-transpeptidase, serine peptidase, beta-lactamase, hydrolase carboxypeptidase
- 1df3.pdb.
transport protein 17-nov-99 1df3
(NMR, 10 structures)
Title: solution structure of a recombinant mouse major urinary protein
Author: c. luecke, l. franzoni, f. abbate, f. loehr, e. ferrari, r. t. sorbi, h. rueterjans, a. spisni
Keywords: carrier protein, pheromone, 8-stranded beta- barrel, binding pocket, disulfide bridge (64-157), signaling protein
- 1el3.pdb.
oxidoreductase 13-mar-00 1el3
Title: human aldose reductase complexed with idd384 inhibitor
Author: a. podjarny
Keywords: inhibition, diabetes
- 1ei3.pdb.
blood clotting 23-feb-00 1ei3
Title: crystal structure of native chicken fibrinogen
Author: z. yang, i. mochalkin, l. veerapandian, m. riley, r. f. doolittle
Keywords: disulfide rings, fibrin forming entities
- 1ew3.pdb.
sugar binding protein 21-apr-00 1ew3
Title: crystal structure of the major horse allergen equ c 1
Author: m. b. lascombe, c. gregoire, p. poncet, g. a. tavares, i. rosinski- chupin, j. rabillon, h. goubran-botros, j. c. mazie, b. david, p. m. alzari
Keywords: beta barrel
- 1eqs.pdb.
hydrolase 06-apr-00 1eqs
Title: k38h mutant of streptomyces k15 dd-transpeptidase
Author: e. fonze, p. charlier
Keywords: dd-transpeptidase, serine peptidase, beta-lactamase, hydrolase carboxypeptidase
- 1es3.pdb.
hydrolase 07-apr-00 1es3
Na
Title: c98a mutant of streptomyces k15 dd-transpeptidase
Author: e. fonze, p. charlier
Keywords: dd-transpeptidase, serine peptidase, beta-lactamase, hydrolase carboxypeptidase
- 1e1c.pdb.
isomerase 29-apr-00 1e1c
Co
Title: methylmalonyl-coa mutase h244a mutant
Author: p. r. evans, n. h. thomae
Keywords: mutase, intramolecular transferase
- 1ggs.pdb.
contractile protein 28-apr-99 1ggs
Ca
(NMR, 1 structures)
Title: nmr structure of the c terminal domain of cardiac troponin c bound to the n terminal domain of cardiac troponin i.
Author: g. m. gasmi-seabrook, j. w. howarth, n. finley, e. abusamhadneh, v. gaponenko, r. m. brito, r. j. solaro, p. r. rosevear
Keywords: cardiac, muscle protein, calcium binding protein
- 1c83.pdb.
hydrolase 14-apr-00 1c83
Title: crystal structure of protein tyrosine phosphatase 1b complexed with 6-(oxalyl-amino)-1h-indole-5-carboxylic acid
Author: h. s. andersen, l. f. iversen, s. branner, h. b. rasmussen, n. p. moller
Keywords: phosphorylation, ligand, inhibitor
- 1qgs.pdb.
transferase 04-may-99 1qgs
Mg
Title: udp-magnesium complex of spsa from bacillus subtilis
Author: s. j. charnock
- 358d.pdb.
deoxyribonucleic acid 20-oct-97 358d
Br
Title: crystal structure of the 2:1 netropsin-dna decamer d(cbrcccciiiii) complex with end-to-end binding
Author: s. n. mitra, x. chen, m. sundaralingam
Keywords: double helix, complexed with drug, modified
- 1dqd.pdb.
immune system 04-jan-00 1dqd
Title: crystal structure of fab hgr-2 f6, a competitive antagonist of the glucagon receptor
Author: l. m. wright, a. m. brzozowski, r. e. hubbard, a. c. w. pike, s. m. roberts, r. n. skovgaard, i. svendsen, h. vissing, r. p. bywater
Keywords: monoclonal antibody, fab, receptor antagonist, typical immunoglobulin fold, light chain, heavy chain, antigen binding site, complementarity-determining regions
- 1eod.pdb.
proton transport 22-mar-00 1eod
Title: crystal structure of the n136d mutant of a shaker t1 domain
Author: m. h. nanao, s. j. cushman, a. w. jahng, d. derubeis, s. choe, p. j. pfaffinger
Keywords: aplysia kv1.1, proton transport
- 1eqd.pdb.
signaling protein 03-apr-00 1eqd
Fe
Title: crystal structure of nitrophorin 4 complexed with cn
Author: a. weichsel, j. f. andersen, s. a. roberts, w. r. montfort
Keywords: lipocalin fold, ferric heme, cyanide
- 1es4.pdb.
hydrolase 07-apr-00 1es4
Title: c98n mutant of streptomyces k15 dd-transpeptidase
Author: e. fonze, p. charlier
Keywords: dd-transpeptidase, serine peptidase, beta-lactamase, hydrolase carboxypeptidase
- 1ck4.pdb.
structural protein 27-apr-99 1ck4
Title: crystal structure of rat a1b1 integrin i-domain.
Author: m. nolte, r. b. pepinsky, s. y. venyaminov, v. koteliansky, p. j. gotwals, m. karpusas
Keywords: metal binding, collagen, adhesion
- 1c84.pdb.
hydrolase 14-apr-00 1c84
Title: crystal structure of protein tyrosine phosphatase 1b complexed with 3-(oxalyl-amino)-naphthalene-2-carboxlic acid
Author: h. s. andersen, l. f. iversen, s. branner, h. b. rasmussen, n. p. moller
Keywords: phosphorylation, ligand, inhibitor
- 1dp5.pdb.
hydrolase/hydrolase inhibitor 23-dec-99 1dp5
Title: the structure of proteinase a complexed with a ia3 mutant inhibitor
Author: m. li, h. l. phylip, w. e. lees, j. r. winther, b. m. dunn, a. wlodawer, j. kay, a. guschina
Keywords: mmm, ia3 mutant
- 1dqu.pdb.
lyase 05-jan-00 1dqu
Title: crystal structure of the isocitrate lyase from aspergillus nidulans
Author: k. l. britton, s. j. langridge, p. j. baker, k. weeradechapon, s. e. sedelnikova, j. r. de lucas, d. w. rice, g. turner
- 1d9e.pdb.
lyase 27-oct-99 1d9e
Title: structure of e. coli kdo8p synthase
Author: s. radaev, p. dastidar, m. patel, r. w. woodard, d. l. gatti
Keywords: kdo8p, tim barrel, dah7p, pep, a5p
- 1eoe.pdb.
proton transport 22-mar-00 1eoe
Title: crystal structure of the v135r mutant of a shaker t1 domain
Author: m. h. nanao, s. j. cushman, a. w. jahng, d. derubeis, s. choe, p. j. pfaffinger
Keywords: aplysia kv1.1, proton transport
- 1edu.pdb.
endocytosis/exocytosis 28-jan-00 1edu
Se
Title: crystal structure of the enth domain of rat epsin 1
Author: j. h. hyman, h. chen, p. decamilli, a. t. brunger
- 1eu5.pdb.
hydrolase 13-apr-00 1eu5
Title: structure of e. coli dutpase at 1.45 a
Author: a. gonzalez, e. cedergren, g. larsson, r. persson
- 1ev5.pdb.
transferase 19-apr-00 1ev5
Title: crystal structure analysis of ala167 mutant of escherichia coli
Author: j. phan, e. mahdavian, c. m. nivens, w. minor, s. berger, h. t. spencer, r. b. dunlap, l. lebioda
- 1evu.pdb.
transferase 20-apr-00 1evu
Ca
Title: human factor xiii with calcium bound in the ion site
Author: r. j. garzon, k. p. pratt, p. d. bishop, i. le trong, r. e. stenkamp, d. c. teller
Keywords: blood coagulation, calcium
- 1es5.pdb.
hydrolase 07-apr-00 1es5
Title: s216a mutant of streptomyces k15 dd-transpeptidase
Author: e. fonze, p. charlier
Keywords: dd-transpeptidase, serine peptidase, beta-lactamase, hydrolase carboxypeptidase
- 1esu.pdb.
hydrolase 11-apr-00 1esu
Title: s235a mutant of tem1 beta-lactamase
Author: e. fonze, p. charlier
Keywords: hydrolase, antibiotic resistance
- 1c85.pdb.
hydrolase 16-apr-00 1c85
Title: crystal structure of protein tyrosine phosphatase 1b complexed with 2-(oxalyl-amino)-benzoic acid
Author: h. s. andersen, l. f. iversen, s. branner, h. b. rasmussen, n. p. moller
Keywords: phosphorylation, ligand, inhibitor
- 2hrv.pdb.
hydrolase 29-apr-99 2hrv
Zn
Title: 2a cysteine proteinase from human rhinovirus 2
Author: j. f. w. petersen, m. m. cherney, h. -d. liebig, t. skern, e. kuechler, m. n. g. james
- 1ddv.pdb.
signaling protein 11-nov-99 1ddv
Title: crystal structure of the homer evh1 domain with bound mglur peptide
Author: j. beneken, j. c. tu, b. xiao, p. f. worley, d. j. leahy
Keywords: polyproline recognition, beta turn
- 1eof.pdb.
proton transport 22-mar-00 1eof
Title: crystal structure of the n136a mutant of a shaker t1 domain
Author: m. h. nanao, s. j. cushman, a. w. jahng, d. derubeis, s. choe, p. j. pfaffinger
Keywords: aplysia kv1.1, proton transport
- 1et6.pdb.
immune system 12-apr-00 1et6
Title: crystal structure of the superantigen smez-2 from streptococcus pyogenes
Author: v. l. arcus, t. proft, j. a. sigrell, h. m. baker, j. d. fraser, e. n. baker
Keywords: ob fold, superantigen fold
- 1evf.pdb.
transferase 19-apr-00 1evf
Title: crystal structure analysis of cys167 mutant of escherichia coli
Author: j. phan, e. mahdavian, c. m. nivens, w. minor, s. berger, h. t. spencer, r. b. dunlap, l. lebioda
- 1evv.pdb.
ribonucleic acid 20-apr-00 1evv
Mg
Title: crystal structure of yeast phenylalanine transfer rna at 2.0 a resolution
Author: l. jovine, s. djordjevic, d. rhodes
Keywords: phenylalanine, phe-trna, yeast, amino-acid transport
- 1ew6.pdb.
oxidoreductase 24-apr-00 1ew6
Fe
Title: the crystal structure and amino acid sequence of dehaloperoxidase from amphitrite ornata indicate common ancestry with globins
Author: l. lebioda
Keywords: halophenols
- 1erf.pdb.
virus/viral protein 06-apr-00 1erf
(other, 17 structures)
Title: conformational mapping of the n-terminal fusion peptide of hiv-1 gp41 using 13c-enhanced fourier transform infrared spectroscopy (ftir)
Author: l. m. gordon, p. w. mobley, r. pilpa, m. a. sherman, a. j. waring
Keywords: viral fusion peptide, gp41
- 1clv.pdb.
hydrolase 04-may-99 1clv
Cl Ca
Title: yellow meal worm alpha-amylase in complex with the amaranth alpha-amylase inhibitor
Author: p. j. b. pereira, v. lozanov, a. patthy, r. huber, w. bode, s. pongor, s. strobl
Keywords: amaranthus hypochondriacus, yellow meal worm, x-ray structure, knottin
- 1c86.pdb.
hydrolase 16-apr-00 1c86
Title: crystal structure of protein tyrosine phosphatase 1b (r47v, d48n) complexed with 2-(oxalyl-amino-4,7-dihydro-5h- thieno[2,3-c]pyran-3-carboxylic acid
Author: l. f. iversen, h. s. andersen, s. b. mortensen, n. p. moller
Keywords: phosphorylation, ligand, inhibitor
- 1xyf.pdb.
hydrolase 11-may-99 1xyf
Title: endo-1,4-beta-xylanase from streptomyces olivaceoviridis
Author: z. fujimoto, h. mizuno, a. kuno, i. kusakabe
- 1qb6.pdb.
hydrolase 29-apr-99 1qb6
F K Ca
Title: bovine trypsin 3,3'-[3,5-difluoro-4-methyl-2, 6- pyridinediylbis(oxy)]bis(benzenecarboximidamide) (zk-805623) complex
Author: m. whitlow
Keywords: serine proteinase, protein-inhibitor complex, s1 pocket, factor xa
- 1ddw.pdb.
signaling protein 11-nov-99 1ddw
Se
Title: homer evh1 domain unliganded
Author: j. beneken, j. c. tu, b. xiao, p. f. worley, d. j. leahy
- 1daw.pdb.
transferase 01-nov-99 1daw
Mg
Title: crystal structure of a binary complex of protein kinase ck2 (alpha-subunit) and mg-amppnp
Author: k. niefind, m. puetter, b. guerra, o. g. issinger, d. schomburg
Keywords: dual-cosubstrate specificity, binary complex
- 1dqg.pdb.
sugar binding protein 04-jan-00 1dqg
Title: crystal structure of the cysteine rich domain of mannose receptor
Author: y. liu, a. j. chirino, z. misulovin, c. leteux, t. feizi, m. c. nussenzweig, p. j. bjorkman
Keywords: multilectin receptor, pituitary hormones, sulfated carbohydrate
- 1ee7.pdb.
antibiotic 31-jan-00 1ee7
(NMR, minimized dg structure, closest to average structure)
Title: nmr structure of the peptaibol chrysospermin c bound to dpc micelles
Author: r. anders, o. ohlenschlager, v. soskic, h. wenschuh, b. heise, l. r. brown
Keywords: peptaibol, peptide antibiotic
- 1euw.pdb.
hydrolase 17-apr-00 1euw
Hg
Title: atomic resolution structure of e. coli dutpase
Author: a. gonzalez, e. cedergren, g. larsson, r. persson
Keywords: mercury derivative
- 1evg.pdb.
transferase 19-apr-00 1evg
Title: crystal structure analysis of cys167 mutant of escherichia coli with unmodified catalytic cysteine
Author: j. phan, e. mahdavian, c. m. nivens, w. minor, s. berger, h. t. spencer, r. b. dunlap, l. lebioda
- 1cp7.pdb.
hydrolase 10-jun-99 1cp7
Zn Ca
Title: aminopeptidase from streptomyces griseus
Author: r. gilboa, h. m. greenblatt, m. perach, a. spungin-bialik, u. lessel, d. schomburg, s. blumberg, g. shoham
Keywords: zymogen, zinc
- 1c87.pdb.
hydrolase 16-apr-00 1c87
Title: crystal structure of protein tyrosine phosphatase 1b complexed with 2-(oxalyl-amino-4,7-dihydro-5h-thieno[2,3- c]pyran-3-carboxylic acid
Author: l. f. iversen, h. s. andersen, s. b. mortensen, n. p. moller
Keywords: phosphorylation, ligand, inhibitor
- 1c4w.pdb.
signaling protein 28-sep-99 1c4w
Title: 1.9 a structure of a-thiophosphonate modified chey d57c
Author: c. j. halkides, m. m. mcevoy, p. matsumura, k. volz, f. w. dahlquist
Keywords: active form of the response regulator, chemotaxis
- 1c57.pdb.
sugar binding protein 26-oct-99 1c57
Mn Ca
(neutron diffraction)
Title: direct determination of the positions of deuterium atoms of bound water in concanavalin a by neutron laue crystallography
Author: j. habash, j. raftery, r. nuttall, h. j. price, m. s. lehmann, c. wilkinson, a. j. kalb(gilboa), j. r. helliwell
Keywords: neutron laue diffraction, bound d2o molecules
- 1duh.pdb.
ribonucleic acid 17-jan-00 1duh
Mg Lu
Title: crystal structure of the conserved domain iv of e. coli 4.5s rna
Author: l. jovine, t. hainzl, c. oubridge, w. g. scott, j. li, t. k. sixma, a. wonacott, t. skarzynski, k. nagai
Keywords: domain iv, helix 8, signal recognition particle, srp, ffh, srp54, elongation factor g, ef-g, 23s rna, non- canonical base pairs, mismatch
- 1d9x.pdb.
gene regulation 30-oct-99 1d9x
Zn
Title: crystal structure of the dna repair protein uvrb
Author: k. theis, p. j. chen, m. skorvaga, b. van houten, c. kisker
- 1ev8.pdb.
transferase 19-apr-00 1ev8
Title: crystal structure analysis of cys167 mutant of escherichia coli
Author: j. phan, e. mahdavian, c. m. nivens, w. minor, s. berger, h. t. spencer, r. b. dunlap, l. lebioda
- 1ewx.pdb.
electron transport 28-apr-00 1ewx
Title: crystal structure of native tryparedoxin i from crithidia fasciculata
Author: b. hofmann, s. a. guerrero, h. m. kalisz, u. menge, e. nogoceke, m. montemartini, m. singh, l. flohe, h. -j. hecht
- 1erx.pdb.
signaling protein 06-apr-00 1erx
Fe
Title: crystal structure of nitrophorin 4 complexed with no
Author: a. weichsel, j. f. andersen, s. a. roberts, w. r. montfort
Keywords: ferric heme, nitric oxide complex
- 1c88.pdb.
hydrolase 16-apr-00 1c88
Title: crystal structure of protein tyrosine phosphatase 1b complexed with 2-(oxalyl-amino)-4,5,6,7-tetrahydro-thieno[2, 3-c]pyridine-3-carboxylic acid
Author: l. f. iversen, h. s. andersen, s. b. mortensen, n. p. moller
Keywords: phosphorylation, ligand, inhibitor
- 1c7x.pdb.
hydrolase/hydrolase inhibitor 10-apr-00 1c7x
(theoretical model)
Title: model structure of a caricain d158e mutant in complex with zpack
Author: s. bhattacharya, a. banerjee
Keywords: thiol protease inhibitor
- 1day.pdb.
transferase 01-nov-99 1day
Mg
Title: crystal structure of a binary complex of protein kinase ck2 (alpha-subunit) and mg-gmppnp
Author: k. niefind, m. puetter, b. guerra, o. g. issinger, d. schomburg
Keywords: dual-cosubstrate specificity, binary complex with mg-gmppnp
- 1dqi.pdb.
oxidoreductase 04-jan-00 1dqi
Fe
Title: crystal structure of superoxide reductase from p. furiosus in the oxidized state at 1.7 angstroms resolution
Author: a. p. yeh, y. hu, f. e. jenney jr. , m. w. w. adams, d. c. rees
Keywords: immunoglobulin-like (ig) beta barrel fold
- 1ewi.pdb.
replication 25-apr-00 1ewi
(NMR, minimized average structure)
Title: human replication protein a: global fold of the n-terminal rpa-70 domain reveals a basic cleft and flexible c-terminal linker
Author: d. m. jacobs, a. s. lipton, n. g. isern, g. w. daughdrill, d. f. lowry, x. gomes, m. s. wold
Keywords: beta barrel
- 1eqy.pdb.
contractile protein 06-apr-00 1eqy
Ca
Title: complex between rabbit muscle alpha-actin: human gelsolin domain 1
Author: p. j. mclaughlin, j. t. gooch, h. g. mannherz, a. g. weeds
Keywords: actin
- 1esi.pdb.
hydrolase 10-apr-00 1esi
Title: r248l mutant of streptomyces k15 dd-transpeptidase
Author: e. fonze, p. charlier
Keywords: dd-transpeptidase, serine peptidase, beta-lactamase, hydrolase carboxypeptidase
- 1qny.pdb.
lectin 26-oct-99 1qny
Mn Ca
Title: x-ray refinement of d2o soaked crystal of concanavalin a
Author: j. habash, j. raftery, r. nuttall, h. j. price, m. s. lehmann, c. wilkinson, a. j. kalb(gilboa), j. r. helliwell
Keywords: sacchsaride free, d2o soaked
- 1qb9.pdb.
hydrolase 30-apr-99 1qb9
K Ca
Title: bovine trypsin 7-[[2-[[1-(1-iminoethyl)piperidin-4-yl]oxy]- 9h-carbozol-9-yl] methyl]naphthalene-2-carboximidamide (zk- 806450) complex
Author: m. whitlow
Keywords: serine proteinase, protein-inhibitor complex, s1 pocket, factor xa
- 1qq9.pdb.
hydrolase 12-jun-99 1qq9
Zn Ca
Title: streptomyces griseus aminopeptidase complexed with methionine
Author: r. gilboa, h. m. greenblatt, m. perach, a. spungin-bialik, u. lessel, d. schomburg, s. blumberg, g. shoham
Keywords: calcium activation, protein- inhibitor complex
- 1daz.pdb.
hydrolase 01-nov-99 1daz
Title: structural and kinetic analysis of drug resistant mutants of hiv-1 protease
Author: b. mahalingam, j. m louis, c. c. reed, j. m. adomat, j. krouse, y. f. wang, r. w harrison, i. t. weber
Keywords: mutant, dimer, inhibitor, occupancy
- 1dcz.pdb.
transferase 05-nov-99 1dcz
(NMR, minimized average structure)
Title: biotin carboxyl carrier domain of transcarboxylase (tc 1.3s)
Author: d. v. reddy, b. c. shenoy, p. r. carey, f. d. sonnichsen
Keywords: hammerhead, biocytin
- 1dpj.pdb.
hydrolase/hydrolase inhibitor 27-dec-99 1dpj
Title: the structure of proteinase a complexed with ia3 peptide inhibitor
Author: m. li, h. l. phylip, w. e. lees, j. r. winther, b. m. dunn, a. wlodawer, j. kay, a. guschina
Keywords: ia3 peptide
- 1d9z.pdb.
gene regulation 30-oct-99 1d9z
Mg Zn
Title: crystal structure of the dna repair protein uvrb in complex with atp
Author: k. theis, p. j. chen, m. skorvaga, b. van houten, c. kisker
Keywords: excinuclease
- 1eoj.pdb.
hydrolase 23-mar-00 1eoj
Title: design of p1' and p3' residues of trivalent thrombin inhibitors and their crystal structures
Author: j. j. slon-usakiewicz, j. sivaraman, y. li, m. cygler, y. konishi
Keywords: thrombin inhibitors, serine protease
- 1ehj.pdb.
electron transport 21-feb-00 1ehj
Fe
(NMR, minimized average structure)
Title: a proton-nmr investigation of the fully reduced cytochrome c7 from desulfuromonas acetoxidans
Author: m. assfalg, l. banci, i. bertini, m. bruschi, m. t. giudici-orticoni
- 1dlk.pdb.
hydrolase 10-dec-99 1dlk
Cl
Title: crystal structure analysis of delta-chymotrypsin bound to a peptidyl chloromethyl ketone inhibitor
Author: a. mac sweeney, g. birrane, m. a. walsh, t. o'connell, j. p. g. malthouse
Keywords: peptidic inhibior, chloromethyl ketone
- 1dqk.pdb.
oxidoreductase 04-jan-00 1dqk
Fe
Title: crystal structure of superoxide reductase in the reduced state at 2.0 angstroms resolution
Author: a. p. yeh, y. hu, f. e. jenney jr. , m. w. w. adams, d. c. rees
Keywords: immunoglobulin-like (ig) beta barrel fold
- 1clk.pdb.
isomerase 29-apr-99 1clk
Co Mg
Title: crystal structure of streptomyces diastaticus no.7 strain m1033 xylose isomerase at 1.9 a resolution with pseudo-i222 space group
Author: l. niu, m. teng, x. zhu, w. gong
Keywords: xylose isomerase, glucose isomerase, streptomyces, pseudo-i222, crystal structure
- 1d8l.pdb.
gene regulation 25-oct-99 1d8l
Title: e. coli holliday junction binding protein ruva nh2 region lacking domain iii
Author: t. nishino, h. iwasaki, m. kataoka, m. ariyoshi, t. fujita, h. shinagawa, k. morikawa
Keywords: helix-hairpin-helix motif, gene regulation
- 1eol.pdb.
hydrolase 23-mar-00 1eol
Title: design of p1' and p3' residues of trivalent thrombin inhibitors and their crystal structures
Author: j. j. slon-usakiewicz, j. sivaraman, y. li, m. cygler, y. konishi
Keywords: thrombin inhibitors, serine protease
- 1erm.pdb.
hydrolase 06-apr-00 1erm
B
Title: x-ray crystal structure of tem-1 beta lactamase in complex with a designed boronic acid inhibitor (1r)-1-acetamido-2- (3-carboxyphenyl)ethane boronic acid
Author: s. ness, r. martin, a. m. kindler, m. paetzel, m. gold, j. b. jones, n. c. j. strynadka
Keywords: structure-based design, boronate inhibitor
- 1enn.pdb.
deoxyribonucleic acid 21-mar-00 1enn
Cl Mg
Title: solvent organization in an oligonucleotide crystal: the structure of d(gcgaattcg)2 at atomic resolution
Author: m. soler-lopez, l. malinina, j. a. subirana
Keywords: atomic resolution, ions, hydration, base triplet
- 1qbn.pdb.
hydrolase 25-apr-99 1qbn
Ca
Title: bovine trypsin 2-[amino(imino)methyl]-2-hydroxyphenoxy]-6- [3-(4,5-dihydro-1h-imidazol-2-yl)phenoxy]pyridine-4- carboxylic acid (zk-806688) complex
Author: m. whitlow
Keywords: serine proteinase, protein-inhibitor complex, s1 pocket
- 1dgo.pdb.
deoxyribonucleic acid 24-nov-99 1dgo
(NMR, 9 structures)
Title: solution structure of a uracil containing hairpin dna
Author: m. ghosh, n. v. kumar, u. varshney, k. v. r. chary
Keywords: hairpin dna, hairpin loop, double helix, udg-uracil interaction
- 1dqo.pdb.
sugar binding protein 04-jan-00 1dqo
Title: crystal structure of the cysteine rich domain of mannose receptor complexed with acetylgalactosamine-4-sulfate
Author: y. liu, a. j. chirino, z. misulovin, c. leteux, t. feizi, m. c. nussenzweig, p. j. bjorkman
Keywords: multilectin receptor, pituitary hormones, sulfated carbohydrate
- 1eko.pdb.
oxidoreductase 09-mar-00 1eko
Title: pig aldose reductase complexed with idd384 inhibitor
Author: a. podjarny
Keywords: inhibition, diabetes
- 1euo.pdb.
signaling protein 17-apr-00 1euo
Fe
Title: crystal structure of nitrophorin 2 (prolixin-s)
Author: j. f. andersen, w. r. montfort
Keywords: lipocalin, heme
- 1evo.pdb.
deoxyribonucleic acid 20-apr-00 1evo
(NMR, 10 structures)
Title: nmr observation of a novel c-tetrad
Author: p. k. patel, n. s. bhavesh, r. v. hosur
Keywords: sv40
- 1ero.pdb.
hydrolase 06-apr-00 1ero
B
Title: x-ray crystal structure of tem-1 beta lactamase in complex with a designed boronic acid inhibitor (1r)-2- phenylacetamido-2-(3-carboxyphenyl)ethyl boronic acid
Author: s. ness, r. martin, a. m. kindler, m. paetzel, m. gold, j. b. jones, n. c. j. strynadka
Keywords: structure-based design, boronate inhibitor
- 1qbo.pdb.
hydrolase 26-apr-99 1qbo
Ca
Title: bovine trypsin 7-[[6-[[1-(1-iminoethyl)piperidin-4-yl]oxy]- 2-methyl-benzimidazol-1-yl]methyl]naphthalene-2- carboximidamid zk-806711 inhibitor complex
Author: m. whitlow
Keywords: inhibitor complex, hydrolase, serine proteinase
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Metalloprotein Structure and Design project home page:
www.scripps.edu/research/metallo
Computational Center for Macromolecular Structure home page:
www.sdsc.edu/CCMS