Recent PDB releases or updates: week of 1 March 2000

• 1dpq.pdb. cell adhesion 27-dec-99 1dpq
  Title: solution structure of the constitutively active mutant of the integrin alpha iib cytoplasmic domain.
  
  
  
• split.pdb. (NMR, 11 structures)
  
  Author: o. vinogradova, t. haas, e. f. plow, j. qin
  
  
• 1d2a.pdb. hydrolase 22-sep-99 1d2a Cl
  Title: crystal structure of a yeast low molecular weight protein tyrosine phosphatase (ltp1) complexed with the activator adenine
  Author: s. wang, c. v. stauffacher, r. l. van etten
  Keywords: tyrosine phosphatase, ltp1, hydrolase
  
• 1c1a.pdb. virus/viral protein 21-jul-99 1c1a
  Title: crystal structure of rsv two-domain integrase
  Author: z. -n. yang, t. c. mueser, f. d. bushman, c. c. hyde
  Keywords: rous sarcoma virus, hiv, x-ray crystallography, virus/viral protein
  
• 2fcb.pdb. immune system 07-jan-99 2fcb
  Title: human fc gamma receptor iib ectodomain (cd32)
  Author: p. sondermann, r. huber, u. jacob
  Keywords: fc, cd32, immune system
  
• 1dg2.pdb. toxin 23-nov-99 1dg2 (NMR, 20 structures)
  Title: solution conformation of a-conotoxin auib
  Author: j. -h. cho, k. h. mok, b. m. olivera, j. m. mcintosh, k. -h. park, k. -h. han
  Keywords: two disulfide bonds and c-term amidation, toxin
  
• 1cvr.pdb. hydrolase 24-aug-99 1cvr Zn Ca
  Title: crystal structure of the arg specific cysteine proteinase gingipain r (rgpb)
  Author: a. eichinger, h. -g. beisel
  Keywords: cysteine proteinase, hydrolase
  
• 1eh3.pdb. metal transport 18-feb-00 1eh3 Fe
  Title: r210k n-terminal lobe human lactoferrin
  Author: n. a. peterson, b. f. anderson, g. b. jameson, j. w. tweedie, e. n. baker
  Keywords: metal binding
  
• 1czc.pdb. transferase 02-sep-99 1czc
  Title: aspartate aminotransferase mutant atb17/139s/142n with glutaric acid
  Author: a. okamoto, s. oue, t. yano, h. kagamiyama
  Keywords: substrate specificity
  
• 1qls.pdb. complex (ligand/annexin) 15-sep-99 1qls Ca
  Title: s100c (s100a11),or calgizzarin, in complex with annexin i n-terminus
  Author: s. rety, j. sopkova, m. renouard, d. osterloh, v. gerke, f. russo-marie, a. lewit-bentley
  Keywords: ef-hand protein, complex (ligand/annexin), ligand of annexin ii, calcium/phospholipid binding protein
  
• 1dw4.pdb. toxin 24-jan-00 1dw4 (NMR, 32 models)
  Title: nmr structure of omega-conotoxin mviia: constraints on disulphide bridges
  Author: r. a. atkinson, b. kieffer, a. dejaegere, f. sirockin, j. -f. lefevre
  Keywords: calcium channel, conformational exchange
  
• 1dw5.pdb. toxin 24-jan-00 1dw5 (NMR, 25 structures)
  Title: nmr structure of omega-conotoxin mviia: no constraints on disulphide bridges
  Author: r. a. atkinson, b. kieffer, a. dejaegere, f. sirockin, j. -f. lefevre
  Keywords: calcium channel, conformational exchange
  
• 1cb5.pdb. hydrolase 01-mar-99 1cb5
  Title: human bleomycin hydrolase.
  Author: p. a. o'farrell, f. gonzalez, w. zheng, s. a. johnston, l. joshua-tor
  Keywords: aminopeptidase, cysteine protease, self- compartmentalizing, bleomycin
  
• 1cze.pdb. transferase 02-sep-99 1cze
  Title: aspartate aminotransferase mutant atb17/139s/142n with succinic acid
  Author: a. okamoto, s. oue, t. yano, h. kagamiyama
  Keywords: substrate specificity
  
• 1cru.pdb. oxidoreductase 16-aug-99 1cru Ca
  Title: soluble quinoprotein glucose dehydrogenase from acinetobacter calcoaceticus in complex with pqq and methylhydrazine
  Author: a. oubrie, h. j. rozeboom, b. w. dijkstra
  Keywords: superbarrel, complex with the cofactor pqq and the inhibitor methylhydrazine, oxidoreductase
  
• 1c1e.pdb. immune system 22-jul-99 1c1e Cl
  Title: crystal structure of a diels-alderase catalytic antibody 1e9 in complex with its hapten
  Author: j. xu, i. a. wilson
  Keywords: diels-alder, immunoglobulin
  
• 1df6.pdb. plant protein 17-nov-99 1df6 (NMR, 16 structures)
  Title: 1h nmr solution structure of cycloviolacin o1
  Author: d. j. craik, n. l. daly, t. bond, c. waine
  Keywords: backbone cyclic, 3-10 helix, double- stranded anti- parallel beta-sheet, hairpin bends, loops
  
• 1ebv.pdb. oxidoreductase 24-jan-00 1ebv Fe
  Title: ovine pghs-1 complexed with salicyl hydroxamic acid
  Author: p. j. loll, c. t. sharkey, s. j. o'connor, d. j. fitzgerald
  
  
• 1c0f.pdb. contractile protein 16-jul-99 1c0f Ca
  Title: crystal structure of dictyostelium caatp-actin in complex with gelsolin segment 1
  Author: y. matsuura, m. stewart, m. kawamoto, n. kamiya, k. saeki, t. yasunaga, t. wakabayashi
  
  
• 2bvw.pdb. hydrolase 18-feb-99 2bvw
  Title: cellobiohydrolase ii (cel6a) from humicola insolens in complex with glucose and cellotetraose
  Author: a. varrot, g. j. davies, m. schulein
  Keywords: cellulose degradation, cellobiohydrolase, cellulase, glycoside hydrolase family 6
  
• 2uag.pdb. ligase 23-feb-99 2uag Mg
  Title: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase
  Author: j. bertrand, e. fanchon, o. dideberg
  Keywords: peptidoglycan synthesis, murd, adp-forming enzyme
  
• 3uag.pdb. ligase 24-feb-99 3uag Mn
  Title: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase
  Author: j. a. bertrand, g. auger, l. martin, e. fanchon, d. blanot, d. le beller, j. van heijenoort, o. dideberg
  Keywords: peptidoglycan synthesis, murd, adp-forming enzyme
  
• 1cb7.pdb. isomerase 02-mar-99 1cb7 Co
  Title: glutamate mutase from clostridium cochlearium reconstituted with methyl- cobalamin
  Author: k. gruber, r. reitzer, c. kratky
  Keywords: coenzyme-b12, radical reaction, tim- barrel, rossman-fold
  
• 1ccw.pdb. isomerase 01-mar-99 1ccw Co
  Title: structure of the coenzyme b12 dependent enzyme glutamate mutase from clostridium cochlearium
  Author: r. reitzer, k. gruber, c. kratky
  Keywords: coenzyme b12, radical reaction, tim- barrel, rossman-fold
  
• 1c0g.pdb. contractile protein 16-jul-99 1c0g Ca
  Title: crystal structure of 1:1 complex between gelsolin segment 1 and a dictyostelium/tetrahymena chimera actin (mutant 228: q228k/t229a/a230y/e360h)
  Author: y. matsuura, m. stewart, m. kawamoto, n. kamiya, k. saeki, t. yasunaga, t. wakabayashi
  Keywords: contractile protein
  
• 1egh.pdb. lyase 15-feb-00 1egh
  Title: structure of methylglyoxal synthase complexed with the competitive inhibitor 2-phosphoglycolate
  Author: d. saadat, d. h. t. harrison
  
  
• 1qox.pdb. hydrolase 24-nov-99 1qox
  Title: beta-glucosidase from bacillus circulans sp. alkalophilus
  Author: n. hakulinen, j. rouvinen
  Keywords: cellulose degradation
  
• 4aiy.pdb. hormone/growth factor 29-dec-98 4aiy (NMR, minimized average structure)
  Title: r6 human insulin hexamer (symmetric), nmr, 'green' substate, average structure
  Author: s. i. o'donoghue, x. chang, r. abseher, m. nilges, j. j. led
  Keywords: glucose metabolism
  
• 5aiy.pdb. hormone/growth factor 29-dec-98 5aiy (NMR, minimized average structure)
  Title: r6 human insulin hexamer (symmetric), nmr, 'red' substate, average structure
  Author: s. i. o'donoghue, x. chang, r. abseher, m. nilges, j. j. led
  Keywords: glucose metabolism
  
• 2aiy.pdb. hormone/growth factor 28-dec-98 2aiy (NMR, 20 structures)
  Title: r6 human insulin hexamer (symmetric), nmr, 20 structures
  Author: s. i. o'donoghue, x. chang, r. abseher, m. nilges, j. j. led
  Keywords: glucose metabolism
  
• 3aiy.pdb. hormone/growth factor 29-dec-98 3aiy (NMR, minimized average structure)
  Title: r6 human insulin hexamer (symmetric), nmr, refined average structure
  Author: s. i. o'donoghue, x. chang, r. abseher, m. nilges, j. j. led
  Keywords: glucose metabolism
  
• 1dki.pdb. toxin 07-dec-99 1dki
  Title: crystal structure of the zymogen form of streptococcal pyrogenic exotoxin b active site (c47s) mutant
  Author: t. f. kagawa, j. c. cooney, h. m. baker, s. mcsweeney, m. liu, s. gubba, j. m. musser, e. n. baker
  Keywords: cysteine protease, papain-like
  
• 1qbi.pdb. oxidoreductase 22-apr-99 1qbi Pt Ca
  Title: soluble quinoprotein glucose dehydrogenase from acinetobacter calcoaceticus
  Author: a. oubrie, h. j. rozeboom, k. h. kalk, j. a duine, b. w. dijkstra
  Keywords: superbarrel
  
• 1qpi.pdb. transcription/dna 25-may-99 1qpi
  Title: crystal structure of tetracycline repressor/operator complex
  Author: p. orth, d. schnappinger, w. hillen, w. saenger, w. hinrichs
  Keywords: repressor/operator complex
  
• 1dej.pdb. contractile protein 15-nov-99 1dej Ca
  Title: crystal structure of a dictyostelium/tetrahymena chimera actin (mutant 646: q228k/t229a/a230y/a231k/s232e/e360h) in complex with human gelsolin segment 1
  Author: y. matsuura, m. stewart, m. kawamoto, n. kamiya, k. saeki, t. yasunaga, t. wakabayashi
  Keywords: contractile protein
  
• 1efz.pdb. transferase 11-feb-00 1efz Zn
  Title: mutagenesis and crystallographic studies of zymomonas mobilis trna-guanine transglycosylase to elucidate the role of serine 103 for enzymatic activity
  Author: u. gradler, r. ficner, g. a. garcia, m. t. stubbs, g. klebe, k. reuter
  Keywords: transferase, glycosyltransferase
  
• 1cdz.pdb. dna binding protein 04-mar-99 1cdz
  Title: brct domain from dna-repair protein xrcc1
  Author: x. zhang, s. morera, p. bates, p. whitehead, a. coffer, k. hainbucher, r. nash, m. sternberg, t. lindahl, p. freemont
  Keywords: brca1, xrcc1, protein-protein interaction
  
• 1cxj.pdb. hydrolase 30-aug-99 1cxj (theoretical modelling)
  Title: theoretical model of pa-bj, a serine proteinase with platelet-aggregating activity from the venom of bothrops jararaca
  Author: s. m. t. serrano, a. wisner, c. bon, r. c. maroun
  Keywords: snake venom, serine proteinase, platelet-aggregating activity
  
• 1dpk.pdb. cell adhesion 27-dec-99 1dpk (NMR, 16 structures)
  Title: solution structure of the cytoplasmic domain of the integrin alpha-iib subunit
  Author: o. vinogradova, t. haas, e. f. plow, j. qin
  
  
• 1d3k.pdb. metal transport 29-sep-99 1d3k Fe
  Title: human serum transferrin
  Author: h. -w. yang, r. t. a. macgillivray, j. chen, y. luo, y. wang, g. d. brayer, a. mason, r. c. woodworth, m. e. p. murphy
  Keywords: glycoprotein, transferrin, nlobe, iron- release, carbonate
  
• 1cbk.pdb. transferase 26-feb-99 1cbk
  Title: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase from haemophilus influenzae
  Author: m. hennig, a. d'arcy, g. dale, c. oefner, m. hennig, a. d'arcy, g. dale, c. oefner
  
  
• 1c4k.pdb. lyase 26-aug-99 1c4k
  Title: ornithine decarboxylase mutant (gly121tyr)
  Author: j. vitali, m. l. hackert
  Keywords: ornithine
  
• 1dul.pdb. signaling protein/rna 17-jan-00 1dul Mg K Se
  Title: structure of the ribonucleoprotein core of the e. coli signal recognition particle
  Author: r. t. batey, r. p. rambo, l. lucast, b. rha, j. doudna
  Keywords: double helix, tetraloop, internal loop, signal recognition particle, srp, ribonucleoprotein
  
• 1cxm.pdb. hydrolase 30-aug-99 1cxm (theoretical modelling)
  Title: theoretical model of bothrombin, a serine proteinase with fibrinogenolytic activity from the venom of bothrops jararaca
  Author: s. m. t. serrano, a. wisner, c. bon, r. c. maroun
  Keywords: snake venom, serine proteinase, fibrinogen-clotting activity
  
• 1cvm.pdb. hydrolase 24-aug-99 1cvm Ca Cd
  Title: cadmium inhibited crystal structure of phytase from bacillus amyloliquefaciens
  Author: s. shin, n. -c. ha, b. -h. oh
  
  
• 1c0m.pdb. transferase 16-jul-99 1c0m
  Title: crystal structure of rsv two-domain integrase
  Author: z. -n. yang, t. c. mueser, f. d. bushman, c. c. hyde
  Keywords: rous sarcoma virus, hiv, x-ray crystallography, protein structure, transferase
  
• 1d4n.pdb. metal transport 04-oct-99 1d4n Fe
  Title: human serum transferrin
  Author: h. -w. yang, r. t. a. macgillivray, j. chen, y. luo, y. wang, g. d. brayer, a. mason, r. c. woodworth, m. e. p. murphy
  Keywords: glycoprotein, transferrin, n-lobe, iron- release, carbonate