Recent PDB releases or updates: week of 19 January 2000

• 1dr0.pdb. oxidoreductase 06-jan-00 1dr0
  Title: structure of modified 3-isopropylmalate dehydrogenase at the c-terminus, hd708
  Author: z. nurachman, s. akanuma, t. sato, t. oshima, n. tanaka
  Keywords: minor groove, paperclip motion
  
• 1czp.pdb. electron transport 06-sep-99 1czp Fe
  Title: anabaena pcc7119 [2fe-2s] ferredoxin in the reduced and oxixized state at 1.17 a
  Author: r. morales, m. h. charon, m. frey
  Keywords: crystal reduced with dithionite
  
• 1twp.pdb. acidic protein 04-dec-98 1twp (theoretical model)
  Title: whey acidic protein (wap) from the tammar wallaby (macropus eugenii), theoretical model
  Author: s. ranganathan, k. j. simpson, d. c. shaw, k. r. nicholas
  Keywords: milk protein, four-disulfide core domain, wap motif
  
• 1dqq.pdb. immune system 04-jan-00 1dqq
  Title: crystal structure of anti-lysozyme antibody hyhel-63
  Author: h. li, r. a. mariuzza
  Keywords: hyhel-63, hen egg white lysozyme
  
• 1b6a.pdb. angiogenesis inhibitor 13-jan-99 1b6a Cl Co
  Title: human methionine aminopeptidase 2 complexed with tnp-470
  Author: s. liu, j. c. clardy
  Keywords: aminopeptidase
  
• 1qd1.pdb. transferase 08-jul-99 1qd1
  Title: the crystal structure of the formiminotransferase domain of formiminotransferase-cyclodeaminase.
  Author: d. kohls, t. sulea, e. purisima, r. e. mackenzie, a. vrielink
  Keywords: alpha-beta-beta-alpha sandwich, electrostatically charged substrate tunnel, transferase
  
• 1qa1.pdb. virus/viral protein 10-apr-99 1qa1
  Title: tailspike protein, mutant v331g
  Author: u. baxa, s. steinbacher, a. weintraub, r. huber, r. seckler
  
  
• 1d8b.pdb. dna binding protein 21-oct-99 1d8b (NMR, 15 structures)
  Title: nmr structure of the hrdc domain from saccharomyces cerevisiae recq helicase
  Author: z. liu, m. j. macias, m. j. bottomley, g. stier, j. p. linge, m. nilges, p. bork, m. sattler
  Keywords: three-helical bundle flanked by two helices
  
• 1b6b.pdb. transferase 13-jan-99 1b6b
  Title: melatonin biosynthesis: the structure of serotonin n- acetyltransferase at 2.5 a resolution suggests a catalytic mechanism
  Author: a. b. hickman, d. c. klein, f. dyda
  
  
• 1c02.pdb. transferase 14-jul-99 1c02
  Title: crystal structure of yeast ypd1p
  Author: h. k. song, j. y. lee, m. g. lee, s. w. suh
  Keywords: transferase
  
• 1qa2.pdb. virus/viral protein 10-apr-99 1qa2
  Title: tailspike protein, mutant a334v
  Author: u. baxa, s. steinbacher, a. weintraub, r. huber, r. seckler
  
  
• 1c03.pdb. signaling protein 14-jul-99 1c03
  Title: crystal structure of ypd1p (triclinic form)
  Author: h. k. song, j. y. lee, m. g. lee, s. w. suh
  Keywords: signal transduction
  
• 1qa3.pdb. virus/viral protein 10-apr-99 1qa3
  Title: tailspike protein, mutant a334i
  Author: u. baxa, s. steinbacher, a. weintraub, r. huber, r. seckler
  
  
• 3had.pdb. oxidoreductase 03-dec-98 3had
  Title: biochemical characterization and structure determination of human heart short chain l-3-hydroxyacyl coa dehydrogenase provide insight into catalytic mechanism
  Author: j. j. barycki, j. m. bratt, l. j. banaszak
  Keywords: beta oxidation, schad, catalytic activity: l-3-hydroxyacyl-coa + nad(+) = 3-oxoacyl-coa + nadh
  
• 1mgt.pdb. transferase 12-jan-99 1mgt
  Title: crystal structure of o6-methylguanine-dna methyltransferase from hyperthermophilic archaeon pyrococcus kodakaraensis strain kod1
  Author: h. hashimoto, t. inoue, m. nishioka, s. fujiwara, m. takagi, t. imanaka, y. kai
  Keywords: dna repair protein, suicidal enzyme, hyperthermostability
  
• 1dm4.pdb. hydrolase 13-dec-99 1dm4
  Title: ser195ala mutant of human thrombin complexed with fibrinopeptide a (7-22)
  Author: r. krishnan, e. j. sadler, a. tulinsky
  Keywords: residual catalytic activity, fibrinopeptide a, hydrolase
  
• 1de4.pdb. metal transport inhibitor/receptor 12-nov-99 1de4 Ca
  Title: hemochromatosis protein hfe complexed with transferrin receptor
  Author: m. j. bennett, j. a. lebron, p. j. bjorkman
  Keywords: hereditary hemochromatosis, mhc class i, transferrin receptor
  
• 1d6d.pdb. deoxyribonucleic acid 13-oct-99 1d6d (NMR, 8 structures)
  Title: solution dna structure containing (a-a)-t triads interdigitated between a-t base pairs and gggg tetrads; nmr, 8 struct.
  Author: v. v. kuryavyi, a. kettani, w. wang, r. jones, d. j. patel
  Keywords: g-tetrad, t-(a-a) triad, a(syn)-a(anti) platform, zipper motif, base-sugar stacking, deoxyribonucleic acid
  
• 1ebt.pdb. oxygen transport 04-nov-98 1ebt Fe
  Title: hemoglobin i from the clam lucina pectinata bound with cyanide
  Author: c. rosano, m. bolognesi, p. ascenzi
  Keywords: hemoglobin, oxygen carrier, globin
  
• 1b34.pdb. rna binding protein 17-dec-98 1b34
  Title: crystal structure of the d1d2 sub-complex from the human snrnp core domain
  Author: s. walke, r. j. young, c. kambach, j. m. avis, e. de la fortelle, j. li, k. nagai
  Keywords: splicing, spliceosome, sm, core snrnp domain, systemic lupus erythematosus, sle
  
• 4gtu.pdb. transferase 12-may-99 4gtu
  Title: ligand-free homodimeric human glutathione s-transferase m4- 4 (e.c.2.5.1.18)
  Author: y. v. patskovsky, l. n. patskovska, i. listowsky
  Keywords: glutathione, conjugation, detoxification, cytosolic, homodimer
  
• 1d3e.pdb. virus/picornavirus-receptor complex 29-sep-99 1d3e (electron microscopy)
  Title: cryo-em structure of human rhinovirus 16 (hrv16) complexed with a two-domain fragment of its cellular receptor, intercellular adhesion molecule-1 (d1d2-icam-1). implications for virus-receptor interactions. alpha carbons only
  Author: j. bella, m. g. rossmann
  Keywords: virus/picornavirus-receptor complex
  
• 1icf.pdb. hydrolase 07-jan-99 1icf
  Title: crystal structure of mhc class ii associated p41 ii fragment in complex with cathepsin l
  Author: g. guncar, g. pungercic, i. klemencic, v. turk, d. turk
  Keywords: cathepsin, mhc class ii, invariant chain, thyroglobulin type-1 domain
  
• 1i1f.pdb. immune system 16-apr-99 1i1f
  Title: crystal structure of human class i mhc (hla-a2.1) complexed with beta 2- microglobulin and hiv-rt variant peptide i1y
  Author: t. j. kirksey, r. r. pogue-caley, j. a. frelinger, e. j. collins
  Keywords: hiv
  
• 1dk6.pdb. deoxyribonucleic acid 06-dec-99 1dk6 (NMR, minimized average structure)
  Title: nmr structure analysis of the dna nine base pair duplex d(catgagtac) d(gtac(np3)catg)
  Author: d. a. klewer, a. hoskins, v. j. davisson, d. e. bergstrom, a. c. liwang
  Keywords: 3-nitropyrrole, nmr, deoxyribonucleic acid
  
• 1dqv.pdb. endocytosis/exocytosis 05-jan-00 1dqv Mg
  Title: crystal structure of synaptotagmin iii c2a/c2b
  Author: r. b. sutton, j. a. ernst, a. t. brunger
  Keywords: calcium ion, c2 domain
  
• 1b6f.pdb. plant protein 13-jan-99 1b6f (NMR, 23 structures)
  Title: birch pollen allergen bet v 1
  Author: k. schweimer, h. sticht, m. boehm, p. roesch
  Keywords: pathogenesis-related protein, nmr structure
  
• 1c8v.pdb. lyase 30-jul-99 1c8v Na
  Title: crystal structure of the complex of bacterial tryptophan synthase with the transition state analogue inhibitor 4-(2- hydroxyphenylthio)-butylphosphonic acid
  Author: a. sachpatzidis, c. dealwis, j. b. lubetsky, p. h. liang, k. s. anderson, e. lolis
  Keywords: enzyme-inhibitor complex, lyase
  
• 1qo6.pdb. cell adhesion protein 03-nov-99 1qo6 (NMR, 55 structures)
  Title: solution structure of a pair of modules from the gelatin-binding domain of fibronectin
  Author: a. a. bocquier, j. r. potts, a. r. pickford, i. d. campbell
  Keywords: gelatin-binding
  
• 1b67.pdb. dna binding protein 19-jan-99 1b67
  Title: crystal structure of the histone hmfa from methanothermus fervidus
  Author: k. decanniere, k. sandman, j. n. reeve, u. heinemann
  Keywords: hmf1
  
• 1b6w.pdb. dna binding protein 19-jan-99 1b6w
  Title: crystal structure of the selenomethionine variant of histone hmfb from methanothermus fervidus
  Author: k. decanniere, k. sandman, j. n. reeve, u. heinemann
  Keywords: hmf-2, archaeal histone b, dna binding protein
  
• 1cmw.pdb. transferase 11-may-99 1cmw
  Title: crystal structure of taq dna-polymerase shows a new orientation for the structure-specific nuclease domain
  Author: u. k. urs, r. murali, h. m. k. murthy
  Keywords: dna repair, transferase
  
• 1dr8.pdb. oxidoreductase 06-jan-00 1dr8
  Title: structure of modified 3-isopropylmalate dehydrogenase at the c-terminus, hd177
  Author: z. nurachman, s. akanuma, t. sato, t. oshima, n. tanaka
  Keywords: minor groove, paperclip motion
  
• 1bwx.pdb. peptide hormone 29-sep-98 1bwx (NMR, 10 structures)
  Title: the solution structure of human parathyroid hormone fragment 1-39, nmr, 10 structures
  Author: u. c. marx, p. roesch, k. adermann, p. bayer, w. -g. forssmann
  Keywords: solution structure, human parathyroid hormone
  
• 1cvx.pdb. deoxyribonucleic acid 24-aug-99 1cvx
  Title: crystal structure of polyamide dimer (impyhppybetadp)2 bound to b-dna decamer ccagatctgg
  Author: c. l. kielkopf, r. e. bremer, s. white, e. e. baird, p. b. dervan, d. c. rees
  Keywords: minor groove recognition, ta recognition, double drug in minor groove, deoxyribonucleic acid
  
• 1qmh.pdb. rna 3'-terminal phosphate cyclase 28-sep-99 1qmh
  Title: crystal structure of rna 3'-terminal phosphate cyclase, an ubiquitous enzyme with unusual topology
  Author: g. j. palm, e. billy, w. filipowicz, a. wlodawer
  Keywords: 2'3'cyclic phosphate rna
  
• 1qgh.pdb. metal transport 27-apr-99 1qgh Fe
  Title: the x-ray structure of the unusual dodecameric ferritin from listeria innocua, reveals a novel intersubunit iron binding site.
  Author: a. ilari, s. stefanini, e. chiancone, d. tsernoglou
  Keywords: metal transport
  
• 2nsi.pdb. oxidoreductase 11-jan-99 2nsi Fe
  Title: human inducible nitric oxide synthase, zn-free, seitu complex
  Author: h. li, c. s. raman, c. b. glaser, e. blasko, t. a. young, j. f. parkinson, m. whitlow, t. l. poulos
  Keywords: heme protein, tetrahydrobiopterin, oxidoreductase
  
• 2dli.pdb. immune system 08-mar-99 2dli
  Title: killer immunoglobulin receptor 2dl2,trigonal form
  Author: p. sun, g. snyder
  Keywords: natural killer receptor, inhibitory receptor, 2dl2, immunoglobulin, immune system
  
• 1nsi.pdb. oxidoreductase 10-jan-99 1nsi Zn Fe
  Title: human inducible nitric oxide synthase, zn-bound, l-arg complex
  Author: h. li, c. s. raman, c. b. glaser, e. blasko, t. a. young, j. f. parkinson, m. whitlow, t. l. poulos
  Keywords: heme protein, tetrahydrobiopterin, oxidoreductase
  
• 1hpy.pdb. peptide hormone 30-sep-98 1hpy (NMR, 10 structures)
  Title: the solution structure of human parathyroid hormone fragment 1-34 in 20% trifluorethanol, nmr, 10 structures
  Author: u. c. marx, p. roesch, k. adermann, p. bayer, w. -g. forssmann
  Keywords: solution structure, human parathyroid hormone, trifluorethanol
  
• 1joy.pdb. transferase 28-dec-98 1joy (NMR, 21 structures)
  Title: solution structure of the homodimeric domain of envz from escherichia coli by multi-dimensional nmr.
  Author: c. tomomori, t. tanaka, r. dutta, h. park, s. k. saha, y. zhu, r. ishima, d. liu, k. i. tong, h. kurokawa, h. qian, m. inouye, m. ikura
  Keywords: sensory transduction, osmolarity sensor protein, inner membrane, phosphorylation
  
• 1d3i.pdb. virus/picornavirus-receptor complex 29-sep-99 1d3i (electron microscopy)
  Title: cryo-em structure of human rhinovirus 14 (hrv14) complexed with a two-domain fragment of its cellular receptor, intercellular adhesion molecule-1 (d1d2- icam-1). implications for virus-receptor interactions. alpha carbons only
  Author: j. bella, m. g. rossmann
  Keywords: hrv14, icam-1, electron microscopy, fitting of x-ray structures into cryo-em reconstructions, common cold, virus uncoating, virus/ viral protein, rhinovirus-receptor complex
  
• 1b59.pdb. hydrolase 13-jan-99 1b59 Co
  Title: complex of human methionine aminopeptidase-2 complexed with ovalicin
  Author: s. liu, j. c. clardy
  Keywords: hydrolase
  
• 1cvy.pdb. deoxyribonucleic acid 24-aug-99 1cvy
  Title: crystal structure of polyamide dimer (impypypybetadp)2 bound to ccagatctgg
  Author: c. l. kielkopf, r. e. bremer, s. white, e. e. baird, p. b. dervan, d. c. rees
  Keywords: double drug in minor groove, minor groove recognition, deoxyribonucleic acid
  
• 1c29.pdb. lyase/lyase inhibitor 23-jul-99 1c29 Na
  Title: crystal structure of the complex of bacterial tryptophan synthase with the transition state analogue inhibitor 4-(2- hydroxyphenylthio)-1-butenylphosphonic acid
  Author: a. sachpatzidis, c. dealwis, j. b. lubetsky, p. h. liang, k. s. anderson, e. lolis
  Keywords: enzyme-inhibitor complex, lyase/lyase inhibitor
  
• 1c39.pdb. signaling protein 25-jul-99 1c39 Mn
  Title: structure of cation-dependent mannose 6-phosphate receptor bound to pentamannosyl phosphate
  Author: l. j. olson, j. zhang, y. c. lee, n. m. dahms, j. j. -p. kim
  Keywords: cation dependent mannose 6-phosphate, p-type lect transport, signaling protein
  
• 1qmi.pdb. rna 3'-terminal phosphate cyclase 28-sep-99 1qmi Se
  Title: crystal structure of rna 3'-terminal phosphate cyclase, an ubiquitous enzyme with unusual topology
  Author: g. j. palm, e. billy, w. filipowicz, a. wlodawer
  Keywords: 2'3'cyclic phosphate rna
  
• 1qty.pdb. hormone/growth factor receptor 29-jun-99 1qty
  Title: vascular endothelial growth factor in complex with domain 2 of the flt-1 receptor
  Author: c. wiesmann, a. m. de vos
  Keywords: flt-1, vegf receptor, receptor tyrosine kinase, cystine knot, glycoprotein, immunoglobulin-like domain, i-set, hormone/growth factor receptor
  
• 6atj.pdb. oxidoreductase 23-apr-99 6atj Fe Ca
  Title: recombinant horseradish peroxidase c complex with ferulic acid
  Author: a. henriksen, a. t. smith, m. gajhede
  Keywords: oxidoreductase, reducing substrate
  
• 7atj.pdb. oxidoreductase 26-apr-99 7atj Fe Ca
  Title: recombinant horseradish peroxidase c1a complex with cyanide and ferulic acid
  Author: a. henriksen, a. t. smith, m. gajhede
  Keywords: oxidoreductase, cyanide, ferulic acid
  
• 1doz.pdb. lyase 22-dec-99 1doz Mg
  Title: crystal structure of ferrochelatase
  Author: d. lecerof, m. fodje, a. hansson, m. hansson, s. al-karadaghi
  Keywords: pi-helix
  
• 1dpz.pdb. oxidoreductase 29-dec-99 1dpz
  Title: stucture of modified 3-isopropylmalate dehydrogenase at the c-terminus, hd711
  Author: z. nurachman, s. akanuma, t. sato, t. oshima, n. tanaka
  Keywords: minor groove, paperclip motion
  
• 1dqj.pdb. immune system/hydrolase 04-jan-00 1dqj
  Title: crystal structure of the anti-lysozyme antibody hyhel-63 complexed with hen egg white lysozyme
  Author: h. li, r. a. mariuzza
  Keywords: protein-protein complex, hen egg white lysozyme
  
• 1c4j.pdb. deoxyribonucleic acid 18-aug-99 1c4j (NMR, 10 structures)
  Title: dna g-quadruplex with a*(g*g*g*g)*a hexad formation
  Author: a. kettani, a. gorin, a. majumdar, e. skripkin, h. zhao, r. jones, d. j. patel
  Keywords: 15n- labeled dna.
  
• 1yaz.pdb. oxidoreductase 23-dec-98 1yaz Cu Zn
  Title: azide-bound yeast cu(ii)/zn superoxide dismutase room temperature (298k) structure
  Author: p. j. hart, m. m. balbirnie, n. l. ogihara, a. m. nersissian, m. s. weiss, j. s. valentine, d. eisenberg
  Keywords: copper, zinc, oxidoreductase
  
• 1qqk.pdb. hormone/growth factor 07-jun-99 1qqk
  Title: the crystal structure of fibroblast growth factor 7 (keratinocyte growth factor)
  Author: s. ye, y. luo, w. lu, r. b. jones, r. j. linhardt, m. kan, w. l. mckeehan, h. pelletier
  
  
• 1d2l.pdb. signaling protein 24-sep-99 1d2l Ca (NMR, 20 structures)
  Title: nmr solution structure of complement-like repeat cr3 from the low density lipoprotein receptor-related protein (lrp). evidence for specific binding to the receptor binding domain of human alpha-2 macroglobulin
  Author: k. dolmer, w. huang, p. g. w. gettins
  Keywords: calcium binding, complement-like repeat, receptor, signaling protein
  
• 1cql.pdb. ribonucleic acid 06-aug-99 1cql (NMR, 10 structures)
  Title: nmr structure of srp rna domain iv
  Author: u. schmitz, t. l. james
  Keywords: rna structure, nmr, domain iv, signal sequence recognition, ribonucleic acid
  
• 1qql.pdb. hormone/growth factor 07-jun-99 1qql
  Title: the crystal structure of fibroblast growth factor 7/1 chimera
  Author: s. ye, y. luo, w. lu, r. b. jones, r. j. linhardt, m. kan, w. l. mckeehan, h. pelletier
  Keywords: hormone/growth factor
  
• 1khm.pdb. rna binding protein 07-jan-99 1khm (NMR, 20 structures)
  Title: c-terminal kh domain of hnrnp k (kh3)
  Author: j. baber, d. libutti, d. levens, n. tjandra
  Keywords: kh domain, three-dimensional structure, nmr, c-myc, dipolar coupling, dna-binding, rna-binding, rna binding protein
  
• 1dqm.pdb. immune system 04-jan-00 1dqm
  Title: crystal structure of anti-lysozyme antibody
  Author: h. li, r. a. mariuzza
  Keywords: hen egg white lysozyme
  
• 1ern.pdb. cytokine 11-jan-99 1ern
  Title: native structure of the extracellular domain of erythropoietin (epo) receptor [ebp]
  Author: o. livnah, e. a. stura, i. a. wilson
  Keywords: signal transduction, cytokine receptor class 1
  
• 2hio.pdb. structural protein,dna binding protein 15-jun-99 2hio
  Title: histone octamer (chicken), chromosomal protein
  Author: g. arents, e. n. moudrianakis
  Keywords: chromosomal protein
  
• 1c2o.pdb. hydrolase 26-jul-99 1c2o
  Title: electrophorus electricus acetylcholinesterase
  Author: y. bourne, p. marchot
  Keywords: alpha/beta hydrolase, tetramer