Recent PDB releases or updates: week of 12 January 2000

• 1b6p.pdb. hydrolase/hydrolase inhibitor 17-jan-99 1b6p
  Title: hiv-1 protease complexed with macrocyclic peptidomimetic inhibitor 7
  Author: j. l. martin, j. begun, a. schindeler, w. a. wickramasinghe, d. alewood, p. f. alewood, d. a. bergman, r. i. brinkworth, g. abbenante, d. r. march, r. c. reid, d. p. fairlie
  Keywords: hydrolase/hydrolase inhibitor
  
• 1cc0.pdb. signaling protein 03-mar-99 1cc0 Mg
  Title: crystal structure of the rhoa.gdp-rhogdi complex
  Author: k. l. longenecker, p. read, u. derewenda, z. dauter, s. garrard, l. walker, a. v. somlyo, a. p. somlyo, r. k. nakamoto, z. s. derewenda
  Keywords: g-protein, signaling protein
  
• 1ct0.pdb. hydrolase/hydrolase inhibitor 18-aug-99 1ct0
  Title: crystal structure of the omtky3 p1 variant omtky3-ser18i in complex with sgpb
  Author: k. s. bateman, s. anderson, w. lu, m. a. qasim, m. laskowski jr. , m. n. g. james
  Keywords: beta-branched p1 residue
  
• 1cq0.pdb. de novo protein 04-aug-99 1cq0 (NMR)
  Title: solution structure of a human hypocretin-2/orexin- b'solution structure of a human hypocretin-2/orexin-b '
  Author: k. -h. lee, e. j. bang, k. -j. chae, d. w. lee, w. lee
  Keywords: human hcrt-2/ox-b,neuropeptide, solution structure, nmr, de novo protein
  
• 1d1a.pdb. contractile protein 15-sep-99 1d1a Mg F Be
  Title: dictyostelium myosin s1dc (motor domain fragment) complexed with o,p-dinitrophenyl aminoethyldiphosphate beryllium trifluoride.
  Author: a. m. gulick, c. b. bauer, j. b. thoden, e. pate, r. g. yount, i. rayment
  Keywords: motility, actin-binding, motor domain, nanologs
  
• 1b5q.pdb. oxidoreductase 07-jan-99 1b5q
  Title: a 30 angstrom u-shaped catalytic tunnel in the crystal structure of polyamine oxidase
  Author: c. binda, a. coda, r. angelini, r. federico, p. ascenzi, a. mattevi
  
  
• 1cz1.pdb. hydrolase 01-sep-99 1cz1
  Title: exo-b-(1,3)-glucanase from candida albicans at 1.85 a resolution
  Author: s. m. cutfield, g. j. davies, g. murshudov, b. f. anderson, p. c. e. moody, p. a. sullivan, j. f. cutfield
  Keywords: candida albicans, glycoside hydrolase family 5
  
• 1d0b.pdb. cell adhesion 09-sep-99 1d0b Ca
  Title: internalin b leucine rich repeat domain
  Author: m. marino, l. braun, p. cossart, p. ghosh
  Keywords: calcium binding, cell adhesion
  
• 1d1b.pdb. contractile protein 15-sep-99 1d1b Mg F Be
  Title: dictyostelium myosin s1dc (motor domain fragment) complexed with o,p-dinitrophenyl aminopropyldiphosphate beryllium trifluoride.
  Author: a. m. gulick, c. b. bauer, j. b. thoden, e. pate, r. g. yount, i. rayment
  Keywords: motility, actin-binding, motor domain, nanologs
  
• 1ct2.pdb. hydrolase/hydrolase inhibitor 18-aug-99 1ct2
  Title: crystal structure of the omtky3 p1 variant omtky3-thr18i in complex with sgpb
  Author: k. s. bateman, s. anderson, w. lu, m. a. qasim, m. laskowski jr. , m. n. g. james
  Keywords: beta-branched p1 residue
  
• 1c9b.pdb. transcription/dna 01-aug-99 1c9b
  Title: crystal structure of a human tbp core domain-human tfiib core domain complex bound to an extended, modified adenoviral major late promoter (admlp)
  Author: f. t. f. tsai, p. b. sigler
  Keywords: cyclin-like fold, helix-turn-helix, tata-box, transcription/dna
  
• 1dn3.pdb. de novo protein 16-dec-99 1dn3 (NMR)
  Title: nmr structure of a model hydrophilic amphipathic helical basic peptide
  Author: r. montserret, m. j. mcleish, a. bockmann, c. geourjon, f. penin
  Keywords: de novo protein
  
• 1djs.pdb. immune system 03-dec-99 1djs
  Title: ligand-binding portion of fibroblast growth factor receptor 2 in complex with fgf1
  Author: d. j. stauber, a. d. digabriele, w. a. hendrickson
  Keywords: fgf, immunoglobulin, immune system
  
• 1d1c.pdb. contractile protein 15-sep-99 1d1c Mg F Be
  Title: dictyostelium myosin s1dc (motor domain fragment) complexed with n-methyl-o-nitrophenyl aminoethyldiphosphate beryllium trifluoride.
  Author: a. m. gulick, c. b. bauer, j. b. thoden, e. pate, r. g. yount, i. rayment
  Keywords: motility, actin-binding, motor domain, nanologs
  
• 1b43.pdb. transferase 05-jan-99 1b43
  Title: fen-1 from p. furiosus
  Author: d. j. hosfield, c. d. mol, b. shen, j. a. tainer
  Keywords: dna repair, dna replication, transferase
  
• 1dl4.pdb. deoxyribonucleic acid 08-dec-99 1dl4 (NMR)
  Title: the solution structure of a bay-region 1s-benz[a]anthracene oxide adduct at the n6 position of adenine of an oligodeoxynucleotide containing the human n- ras codon 61 sequence
  Author: z. li, h. -y. kim, p. j. tamura, c. m. harris, t. m. harris, m. p. stone
  
  
• 1dkd.pdb. chaperone 07-dec-99 1dkd
  Title: crystal structure of a groel (apical domain) and a dodecameric peptide complex
  Author: l. chen, p. b. sigler
  Keywords: hsp60, protein folding, peptide selection, phage display, peptide binding groove formed by paired helices substrate peptide in beta-sheet
  
• 1by4.pdb. gene regulation/dna 22-oct-98 1by4 Zn
  Title: structure and mechanism of the homodimeric assembly of the rxr on dna
  Author: q. zhao, s. a. chasse, s. devarakonda, m. l. sierk, b. ahvazi, p. b. sigler, f. rastinejad
  Keywords: nuclear receptor, hormone response element, protein- dna interations, crystal structure, gene regulation/dna
  
• 1ct4.pdb. hydrolase/hydrolase inhibitor 18-aug-99 1ct4
  Title: crystal structure of the omtky3 p1 variant omtky3-val18i in complex with sgpb
  Author: k. s. bateman, s. anderson, w. lu, m. a. qasim, m. laskowski jr. , m. n. g. james
  Keywords: beta-branched p1 residue
  
• 1dcf.pdb. transferase 04-nov-99 1dcf
  Title: crystal structure of the receiver domain of the ethylene receptor of arabidopsis thaliana
  Author: h. j. muller-dieckmann, a. grantz, s. h. kim
  
  
• 1d2f.pdb. transferase 23-sep-99 1d2f
  Title: x-ray structure of maly from escherichia coli: a pyridoxal- 5’-phosphate-dependent enzyme acting as a modulator in mal gene expression
  Author: t. clausen
  Keywords: large plp-binding domain, small c- terminal domain, open alpha-beta structure.
  
• 1cz6.pdb. toxin 01-sep-99 1cz6 (NMR, 20 structures)
  Title: solution structure of androctonin
  Author: n. mandard, f. vovelle
  Keywords: beta sheet
  
• 1dng.pdb. de novo protein 16-dec-99 1dng (NMR)
  Title: nmr structure of a model hydrophilic amphipathic helical acidic peptide
  Author: r. montserret, m. j. mcleish, a. bockmann, c. geourjon, f. penin
  Keywords: de novo protein
  
• 1dbg.pdb. lyase 02-nov-99 1dbg
  Title: crystal structure of chondroitinase b
  Author: w. huang, a. matte, y. li, y. s. kim, r. j. linhardt, h. su, m. cygler
  Keywords: polysaccharide lyase, dematan sulfate
  
• 1dpw.pdb. hydrolase 28-dec-99 1dpw Cl
  Title: structure of hen egg-white lysozyme in complex with mpd
  Author: m. s. weiss, g. j. palm, r. hilgenfeld
  Keywords: hydrolase
  
• 1b4w.pdb. hydrolase 30-dec-98 1b4w
  Title: basic phospholipase a2 from agkistrodon halys pallas- implications for its association and anticoagulant activities by x-ray crystallography
  Author: k. h. zhao, z. j. lin
  Keywords: agkistrodon halys pallas, dimer, anticoagulant activity
  
• 1b57.pdb. lyase 12-jan-99 1b57 Cl Zn Na
  Title: class ii fructose-1,6-bisphosphate aldolase in complex with phosphoglycolohydroxamate
  Author: d. r. hall, w. n. hunter
  Keywords: aldehyde, glycolysis
  
• 1cl7.pdb. immune system 06-may-99 1cl7
  Title: anti hiv1 protease fab
  Author: j. lescar, g. a. bentley
  Keywords: cross-reactivity, hiv1 protease, enzyme inhibition, immunoglobulin
  
• 1c9w.pdb. oxidoreductase 03-aug-99 1c9w
  Title: cho reductase with nadp+
  Author: q. ye, x. li, d. hyndman, t. g. flynn, z. jia
  Keywords: protein-nadp+ complex
  
• 1dpx.pdb. hydrolase 28-dec-99 1dpx Cl
  Title: structure of hen egg-white lysozyme
  Author: m. s. weiss, g. j. palm, r. hilgenfeld
  Keywords: hydrolase
  
• 1d6x.pdb. immune system 15-oct-99 1d6x (NMR, 19 structures)
  Title: the structure of the antimicrobial peptide tritrpticin bound to micelles-a distinct membrane-bound peptide fold
  Author: d. j. schibli, p. m. hwang, h. j. vogel
  Keywords: immune system
  
• 1d0x.pdb. contractile protein 15-sep-99 1d0x Mg F Be
  Title: dictyostelium myosin s1dc (motor domain fragment) complexed with m-nitrophenyl aminoethyldiphosphate beryllium trifluoride.
  Author: a. m. gulick, c. b. bauer, j. b. thoden, e. pate, r. g. yount, i. rayment
  Keywords: motility, actin-binding, motor domain, nanologs
  
• 1d0y.pdb. contractile protein 15-sep-99 1d0y Mg F Be
  Title: dictyostelium myosin s1dc (motor domain fragment) complexed with o-nitrophenyl aminoethyldiphosphate beryllium fluoride.
  Author: a. m. gulick, c. b. bauer, j. b. thoden, e. pate, r. g. yount, i. rayment
  Keywords: motility, actin-binding, motor domain, nanologs
  
• 1b6i.pdb. hydrolase 14-jan-99 1b6i
  Title: t4 lysozyme mutant with cys 54 replaced by thr, cys 97 replaced by ala, thr 21 replaced by cys and lys 124 replaced by cys (c54t,c97a,t21c,k124c)
  Author: i. r. vetter, w. a. baase, s. snow, b. w. matthews
  
  
• 1cqi.pdb. ligase 06-aug-99 1cqi Mg
  Title: crystal structure of the complex of adp and mg2+ with dephosphorylated e. coli succinyl-coa synthetase
  Author: m. a. joyce, m. e. fraser, m. n. g. james, w. a. bridger, w. t. wolodko
  Keywords: rossmann fold, ligase
  
• 1dmz.pdb. transferase 15-dec-99 1dmz (NMR, 20 structures)
  Title: a refined nmr structure of a new phophopeptide-binding domain containing the fha2 of rad53
  Author: i. -j. l. byeon, h. liao, m. -d. tsai
  Keywords: antiparallel beta-sheets, transferase
  
• 1d0z.pdb. contractile protein 15-sep-99 1d0z Mg F Be
  Title: dictyostelium myosin s1dc (motor domain fragment) complexed with p-nitrophenyl aminoethyldiphosphate beryllium trifluoride.
  Author: a. m. gulick, c. b. bauer, j. b. thoden, e. pate, r. g. yount, i. rayment
  Keywords: motility, actin-binding, motor domain, nanologs
  
• 1b6j.pdb. hydrolase/hydrolase inhibitor 17-jan-99 1b6j
  Title: hiv-1 protease complexed with macrocyclic peptidomimetic inhibitor 1
  Author: j. l. martin, j. begun, a. schindeler, w. a. wickramasinghe, d. alewood, p. f. alewood, d. a. bergman, r. i. brinkworth, g. abbenante, d. r. march, r. c. reid, d. p. fairlie
  
  
• 1cqj.pdb. ligase 06-aug-99 1cqj
  Title: crystal structure of dephosphorylated e. coli succinyl-coa synthetase
  Author: m. a. joyce, m. e. fraser, m. n. g. james, w. a. bridger, w. t. wolodko
  Keywords: rossmann fold, ligase
  
• 1b6k.pdb. hydrolase/hydrolase inhibitor 17-jan-99 1b6k
  Title: hiv-1 protease complexed with macrocyclic peptidomimetic inhibitor 5
  Author: j. l. martin, j. begun, a. schindeler, w. a. wickramasinghe, d. alewood, p. f. alewood, d. a. bergman, r. i. brinkworth, g. abbenante, d. r. march, r. c. reid, d. p. fairlie
  Keywords: hydrolase/hydrolase inhibitor
  
• 1c3k.pdb. sugar binding protein 28-jul-99 1c3k
  Title: crystal structure of helianthus tuberosus lectin
  Author: y. bourne, v. zamboni, a. barre, w. j. peumans, e. j. m. van damme, p. rouge
  Keywords: agglutinin, jacalin-related, mannose
  
• 1b6l.pdb. hydrolase/hydrolase inhibitor 17-jan-99 1b6l
  Title: hiv-1 protease complexed with macrocyclic peptidomimetic inhibitor 4
  Author: j. l. martin, j. begun, a. schindeler, w. a. wickramasinghe, d. alewood, p. f. alewood, d. a. bergman, r. i. brinkworth, g. abbenante, d. r. march, r. c. reid, d. p. fairlie
  
  
• 1b6m.pdb. hydrolase/hydrolase inhibitor 17-jan-99 1b6m
  Title: hiv-1 protease complexed with macrocyclic peptidomimetic inhibitor 6
  Author: j. l. martin, j. begun, a. schindeler, w. a. wickramasinghe, d. alewood, p. f. alewood, d. a. bergman, r. i. brinkworth, g. abbenante, d. r. march, r. c. reid, d. p. fairlie
  
  
• 1c3m.pdb. sugar binding protein 28-jul-99 1c3m
  Title: crystal structure of heltuba complexed to man(1-3)man
  Author: y. bourne, v. zamboni, a. barre, w. j. peumans, e. j. m. van damme, p. rouge
  Keywords: jacalin-related, beta-prism, mannose
  
• 1b6n.pdb. hydrolase/hydrolase inhibitor 17-jan-99 1b6n
  Title: hiv-1 protease complexed with macrocyclic peptidomimetic inhibitor 3
  Author: j. l. martin, j. begun, a. schindeler, w. a. wickramasinghe, d. alewood, p. f. alewood, d. a. bergman, r. i. brinkworth, g. abbenante, d. r. march, r. c. reid, d. p. fairlie
  Keywords: hydrolase/hydrolase inhibitor
  
• 1c3n.pdb. sugar binding protein 28-jul-99 1c3n
  Title: crystal structure of helianthus tuberosus lectin complexed to man(1-2)man
  Author: y. bourne, v. zamboni, a. barre, w. j. peumans, e. j. m. van damme, p. rouge
  Keywords: beta-prism, mannose, jacalin-related
  
• 1dbo.pdb. lyase 03-nov-99 1dbo
  Title: crystal structure of chondroitinase b
  Author: w. huang, a. matte, y. li, y. s. kim, r. j. linhardt, h. su, m. cygler
  Keywords: beta-elimination, dematan sulfate, lyase
  
• 1b6o.pdb. hydrolase/hydrolase inhibitor 17-jan-99 1b6o
  Title: hiv-1 protease complexed with macrocyclic peptidomimetic inhibitor 2
  Author: j. l. martin, j. begun, a. schindeler, w. a. wickramasinghe, d. alewood, p. f. alewood, d. a. bergman, r. i. brinkworth, g. abbenante, d. r. march, r. c. reid, d. p. fairlie
  
  
• 1cso.pdb. hydrolase/hydrolase inhibitor 18-aug-99 1cso
  Title: crystal structure of the omtky3 p1 variant omtky3-ile18i in complex with sgpb
  Author: k. s. bateman, s. anderson, w. lu, m. a. qasim, m. laskowski jr. , m. n. g. james
  Keywords: beta-branched p1 residue