Recent PDB releases or updates: week of 5 January 2000

• 1dm0.pdb. toxin 13-dec-99 1dm0
  Title: shiga toxin
  Author: m. e. fraser, m. m. chernaia, y. v. kozlov, m. n. james
  Keywords: polypeptide a, blocking, active site, toxin
  
• 1do1.pdb. oxygen storage/transport 18-dec-99 1do1 Fe
  Title: carbonmonoxy-myoglobin mutant l29w at 105k
  Author: a. ostermann, r. waschipky, f. g. parak, g. u. nienhaus
  Keywords: respiratory protein, oxygen storage/transport
  
• 1doq.pdb. transferase 21-dec-99 1doq (NMR, minimized average structure)
  Title: the c-terminal domain of the rna polymerase alpha subunit from thermus thermophilus
  Author: t. wada, t. yamazaki, y. kyogoku
  Keywords: rna polymerase, thermus thermophilus, transferase
  
• 1qu1.pdb. virus/viral protein 05-jul-99 1qu1
  Title: crystal structure of eha2 (23-185)
  Author: j. chen, j. j. skehel, d. c. wiley
  Keywords: low-ph, virus/viral protein
  
• 1qr1.pdb. immune system 17-jun-99 1qr1
  Title: poor binding of a her-2/neu epitope (gp2) to hla-a2.1 is due to a lack of interactions in the center of the peptide
  Author: j. j. kuhns, m. a. batalia, s. yan, e. j. collins
  Keywords: immune system
  
• 1h2r.pdb. oxidoreductase 14-jun-99 1h2r Mg Fe Ni
  Title: three-dimensional structure of ni-fe hydrogenase from desulfivibrio vulgaris miyazaki f in the reduced form at 1.4 a resolution
  Author: y. higuchi, h. ogata
  Keywords: sulfur-bridging ligand, ni-fe hydrogenase, reduced enzyme, atomic cap at active site, oxidoreductase
  
• 1d3r.pdb. deoxyribonucleic acid 30-sep-99 1d3r Br
  Title: crystal structure of triplex dna
  Author: s. rhee, z. -j. han, k. liu, h. t. todd miles, d. r. davies
  Keywords: deoxyribonucleic acid
  
• 1b9b.pdb. isomerase 09-feb-99 1b9b
  Title: triosephosphate isomerase of thermotoga maritima
  Author: d. maes, r. k. wierenga
  Keywords: thermophilic, thermotoga maritima
  
• 1do3.pdb. oxygen storage/transport 18-dec-99 1do3 Fe
  Title: carbonmonoxy-myoglobin (mutant l29w) after photolysis at t>180k
  Author: a. ostermann, r. waschipky, f. g. parak, g. u. nienhaus
  Keywords: respiratory protein, photolysed myoglobin, ligand migration, oxygen storage/transport
  
• 1cl3.pdb. gene regulation 04-may-99 1cl3 (NMR, 25 structures)
  Title: molecular insights into pebp2/cbf-smmhc associated acute leukemia revealed from the three-dimensional structure of pebp2/cbf beta
  Author: m. goger, v. gupta, w. y. kim, k. shigesada, y. ito, m. h. werner
  Keywords: core-binding factor, gene regulation
  
• 1qo3.pdb. complex (nk receptor/mhc class i) 01-jun-99 1qo3
  Title: complex between nk cell receptor ly49a and its mhc class i ligand h-2dd
  Author: j. tormo, r. a. mariuzza
  Keywords: inhibitory receptor, mhc-i, c-type lectin-like, histocompatibility, b2m, ly49, ly-49
  
• 6ald.pdb. lyase 23-dec-98 6ald
  Title: rabbit muscle aldolase a/fructose-1,6-bisphosphate complex
  Author: k. h. choi, a. s. mazurkie, a. j. morris, d. utheza, d. r. tolan, k. n. allen
  Keywords: fructose-1,6-bisphosphate, linear hexose, michaelis complex, lyase
  
• 456d.pdb. deoxyribonucleic acid 06-mar-99 456d Mg
  Title: molecular and crystal structure of d(cgcgmo6aatccgcg): the watson-crick type n6-methoxyadenosine/cytidine base-pairs in b-dna
  Author: t. chatake, a. ono, y. ueno, a. matsuda, a. takenaka
  Keywords: mismatch, methoxyadenosine, dna damage, b-dna, double helix, deoxyribonucleic acid
  
• 457d.pdb. deoxyribonucleic acid 06-mar-99 457d Mg
  Title: molecular and crystal structure of d(cgcgmo6aattcgcg): n6- methoxyadenosine/ thymidine base-pairs in b-dna
  Author: t. chatake, a. ono, y. ueno, a. matsuda, a. takenaka
  Keywords: methoxyadenosine, dna damage, b-dna, double helix, deoxyribonucleic acid
  
• 1do4.pdb. oxygen storage/transport 18-dec-99 1do4 Fe
  Title: carbonmonoxy-myoglobin (mutant l29w) after photolysis at t<180k
  Author: a. ostermann, r. waschipky, f. g. parak, g. u. nienhaus
  Keywords: respiratory protein, photolysed myoglobin, ligand migration, oxygen storage/transport
  
• 1dbd.pdb. gene regulation 21-may-99 1dbd (NMR, minimized average structure)
  Title: e2 dna-binding domain from papillomavirus bpv-1
  Author: s. veeraraghavan, c. c. mello, e. j. androphy, j. d. baleja
  Keywords: gene regulation
  
• 1c4d.pdb. membrane protein, ion channel 04-jun-99 1c4d Cl Cs
  Title: gramicidin cscl complex
  Author: b. a. wallace
  Keywords: antibiotic, membrane, membrane protein, ion channel
  
• 1c2t.pdb. transferase 26-jul-99 1c2t
  Title: new insights into inhibitor design from the crystal structure and nmr studies of e. coli gar transformylase in complex with beta-gar and 10-formyl-5,8,10-trideazafolic acid.
  Author: s. e. greasley, m. m. yamashita, h. cai, s. j. benkovic, d. l. boger, i. a. wilson
  Keywords: anti-cancer agent, inhibitor complex, transferase
  
• 1qqt.pdb. ligase 08-jun-99 1qqt Zn
  Title: methionyl-trna synthetase from escherichia coli
  Author: y. mechulam, e. schmitt, l. maveyraud, c. zelwer, o. nureki, s. yokoyama, m. konno, s. blanquet
  Keywords: helix bundle, trna ligase
  
• 1dx6.pdb. serine hydrolase 21-dec-99 1dx6
  Title: structure of acetylcholinesterase complexed with (-)-galanthamine at 2.3a resolution
  Author: h. m. greenblatt, g. kryger, t. t. lewis, i. silman, j. l. sussman
  Keywords: cholinesterase, alzheimer's disease
  
• 1gyf.pdb. immune system 30-apr-99 1gyf (NMR, 16 structures)
  Title: gyf domain from human cd2bp2 protein
  Author: c. freund, v. doetsch, k. nishizawa, e. l. reinherz, g. wagner
  Keywords: proline-rich sequence recognition, adapter domain, immune system
  
• 1do7.pdb. oxygen storage/transport 19-dec-99 1do7 Fe
  Title: carbonmonoxy-myoglobin (mutant l29w) rebinding structure after photolysis at t< 180k
  Author: a. ostermann, r. waschipky, f. g. parak, g. u. nienhaus
  Keywords: respiratory protein, photolysed myoglobin, ligand migration, oxygen storage/transport
  
• 1dk7.pdb. chaperone 06-dec-99 1dk7
  Title: crystal structure of an isolated apical domain of groel
  Author: l. chen, p. b. sigler
  Keywords: protein folding
  
• 1dc7.pdb. signaling protein 04-nov-99 1dc7 (NMR, minimized averaged structure)
  Title: structure of a transiently phosphorylated "switch" in bacterial signal transduction
  Author: d. kern, b. f. volkman, p. luginbuhl, m. j. nohaile, s. kustu, d. e. wemmer
  Keywords: phosphorylation, signal transduction, conformational rearrangement, two-component system, signaling protein
  
• 1cjg.pdb. transcription/dna 14-apr-99 1cjg Ho (NMR, 11 structures)
  Title: nmr structure of lac repressor hp62-dna complex
  Author: c. a. e. m. spronk, a. m. j. j. bonvin, p. k. radha, g. melacini, r. boelens, r. kaptein
  Keywords: lac operon, lac repressor, headpiece, lac operator, transcription/dna
  
• 1qag.pdb. structural protein 05-mar-99 1qag Se
  Title: actin binding region of the dystrophin homologue utrophin
  Author: n. h. keep, s. j. winder, c. a. moores, s. walke, f. l. m. norwood, j. kendrick-jones
  Keywords: domain swapping, actin binding, utrophin, dystrophin, structural protein
  
• 1dgx.pdb. immune system 26-nov-99 1dgx (theoretical model)
  Title: synthetic human combinatorial antibody library (hucal) framework vl kappa 1
  Author: a. knappik, p. pack, l. ge, a. honegger, m. fischer, g. wellnhofer, a. hoess, j. woelle, a. plueckthun, b. virnekaes
  Keywords: immune system
  
• 1dc8.pdb. signaling protein 04-nov-99 1dc8 (NMR, minimized average structure)
  Title: structure of a transiently phosphorylated "switch" in bacterial signal transduction
  Author: d. kern, b. f. volkman, p. luginbuhl, m. j. nohaile, s. kustu, d. e. wemmer
  Keywords: phosphorylation, signal transduction, conformational rearrangement, two-component system, signaling protein
  
• 1bk8.pdb. plant defensin 15-jul-98 1bk8 (NMR, 25 structures)
  Title: determination of the three-dimensional solution structure of aesculus hippocastanum antimicrobial protein 1 (ah-amp1) by 1h nmr, 25 structures
  Author: f. fant, f. a. m. borremans
  Keywords: antimicrobial, cysteine-stabilized alfa/ beta motif
  
• 1qlh.pdb. oxidoreductase 31-aug-99 1qlh Zn
  Title: horse liver alcohol dehydrogenase complexed to nad double mutant of gly 293 ala and pro 295 thr
  Author: s. ramaswamy, b. v. plapp
  Keywords: alcohol, nicotinamide coenzyme, oxidoreductase, double mutant
  
• 1do9.pdb. electron transport 20-dec-99 1do9 Fe (NMR, 40 structures)
  Title: solution structure of oxidized microsomal rabbit cytochrome b5. factors determining the heterogeneous binding of the heme.
  Author: l. banci, i. bertini, a. rosato, s. scacchieri
  Keywords: heme, electron transport
  
• 1ddy.pdb. ribonucleic acid 12-nov-99 1ddy Co
  Title: molecular recognition by the vitamin b12 rna aptamer
  Author: d. sussman, j. c. nix, c. wilson
  Keywords: triplex, vitamin b12, aptamer, ribonucleic acid
  
• 1qlj.pdb. oxidoreductase 01-sep-99 1qlj Zn
  Title: horse liver alcohol dehydrogenase apo enzyme double mutant of gly 293 ala and pro 295 thr
  Author: s. ramaswamy, b. v. plapp
  Keywords: alcohol, oxidoreductase, double mutant
  
• 1dnl.pdb. oxidoreductase 16-dec-99 1dnl Se
  Title: x-ray structure of escherichia coli pyridoxine 5'-phosphate oxidase complexed with fmn at 1.8 angstrom resolution
  Author: m. k. safo, i. mathews, f. n. musayev, m. l. di salvo, d. j. thiel, d. j. abraham, v. schirch
  Keywords: protein-fmn complex, oxidoreductase
  
• 1d6n.pdb. transferase 14-oct-99 1d6n Mg
  Title: ternary complex structure of human hgprtase, prpp, mg2+, and the inhibitor hpp reveals the involvement of the flexible loop in substrate binding
  Author: g. k. balendiran
  Keywords: transferase
  
• 1qfn.pdb. electron transport/oxidoreductase 12-apr-99 1qfn (NMR, 20 structures)
  Title: glutaredoxin-1-ribonucleotide reductase b1 mixed disulfide bond
  Author: m. j. berardi, j. h. bushweller
  Keywords: ribonucleotide reductase, disulfide, electron transfer, electron transport/oxidoreductase
  
• 1b4o.pdb. dna-binding protein 24-dec-98 1b4o (NMR, minimized average structure)
  Title: nmr study of sso7d mutant (f31a) minimized average structure
  Author: r. consonni, l. santomo, l. zetta
  Keywords: thermostable ribonuclease, 3d-structure, nmr, sulfolobus solfataricus
  
• 1cmo.pdb. transcription factor 11-may-99 1cmo (NMR, 43 structures)
  Title: immunoglobulin motif dna-recognition and heterodimerization for the pebp2/cbf runt-domain
  Author: t. nagata, v. gupta, d. sorce, w. y. kim, a. sali, b. t. chait, k. shigesada, y. ito, m. h. werner
  Keywords: hematopoiesis, osteogenesis, ig-fold, nmr