Recent PDB releases or updates: week of 29 December 1999

• 1c50.pdb. transferase 15-dec-99 1c50 Cl F
  Title: identification and structural characterization of a novel allosteric binding site of glycogen phosphorylase b
  Author: n. g. oikonomakos, v. t. skamnaki, k. e. tsitsanou, n. g. gavalas, l. n. johnson
  Keywords: glycogen phosphorylase b, inhibition, central cavity, drug binding site, transferase
  
• 1qo0.pdb. binding protein 26-oct-99 1qo0
  Title: amide receptor of the amidase operon of pseudomonas aeruginosa (amic) complexed with the negative regulator amir.
  Author: l. h. pearl, b. p. o'hara, s. m. roe
  Keywords: gene regulator, receptor
  
• 1qf0.pdb. hydrolase 06-apr-99 1qf0 Zn Ca
  Title: thermolysin (e.c.3.4.24.27) complexed with (2-sulphanyl-3- phenylpropanoyl)-phe-tyr. parameters for zn-bidentation of mercaptoacyldipeptides in metalloendopeptidase
  Author: j. -f. gaucher, m. selkti, g. tiraboschi, t. prange, b. p. roques, a. tomas, m. c. fournie-zaluski
  Keywords: zn metallopeptidase, hydrolase
  
• 1b4q.pdb. oxidoreductase 25-dec-98 1b4q (NMR, 21 structures)
  Title: solution structure of human thioltransferase complex with glutathione
  Author: y. yang, s. c. jao, s. nanduri, d. w. starke, j. j. mieyal, j. qin
  Keywords: nmr, disulfide intermediate, glutathione, oxidoreductase
  
• 1c2a.pdb. hydrolase inhibitor 23-jul-99 1c2a
  Title: crystal structure of barley bbi
  Author: h. k. song, y. s. kim, j. k. yang, j. moon, j. y. lee, s. w. suh
  Keywords: hydrolase inhibitor
  
• 1qf1.pdb. hydrolase 06-apr-99 1qf1 Zn Ca
  Title: thermolysin (e.c.3.4.24.27) complexed with (2- sulphanylheptanoyl)-phe-ala. parameters for zn-bidentation of mercaptoacyldipeptides in metalloendopeptidase
  Author: j. -f. gaucher, m. selkti, g. tiraboschi, t. prange, b. p. roques, a. tomas, m. c. fournie-zaluski
  Keywords: zn metallopeptidase, hydrolase
  
• 1qs1.pdb. toxin 25-jun-99 1qs1
  Title: crystal structure of vegetative insecticidal protein2 (vip2)
  Author: s. han, j. a. craig, c. d. putnam, n. b. carozzi, j. a. tainer
  Keywords: binary toxin, insecticial protein
  
• 3rpb.pdb. endocytosis/exocytosis 19-apr-99 3rpb (NMR, 20 structures)
  Title: the c2b-domain of rabphilin: structural variations in a janus-faced domain
  Author: j. ubach, j. garcia, m. p. nittler, t. c. sudhof, j. rizo
  Keywords: c2b-domain, rabphilin, endocytosis/exocytosis
  
• 1dgr.pdb. plant protein 25-nov-99 1dgr
  Title: refined crystal structure of canavalin from jack bean
  Author: t. -p. ko, a. mcpherson
  Keywords: plant protein
  
• 1dc2.pdb. gene regulation 04-nov-99 1dc2 (NMR, 20 structures)
  Title: solution nmr structure of tumor suppressor p16ink4a, 20 structures
  Author: c. yuan, t. l. selby, j. li, i. j. l. byeon, m. d. tsai
  Keywords: helix-turn-helix, helix bundle, gene regulation
  
• 1d9b.pdb. transferase 27-oct-99 1d9b
  Title: crystal structure of ketoacyl-acp synthase iii (fabh)
  Author: x. qiu, c. janson, a. konstandinidis, s. nwagwu, c. silverman
  Keywords: fabh, condensing enzymes, transferase
  
• 1czr.pdb. electron transport 07-sep-99 1czr
  Title: comparisons of wild type and mutant flavodoxins from anacystis nidulans. structural determinants of the redox potentials.
  Author: d. m. hoover, c. l. drennan, a. l. metzger, c. osborne, c. h. weber, k. a. pattridge, m. l. ludwig
  Keywords: redox potential, fmn binding, electron transport
  
• 1cw2.pdb. lyase 25-aug-99 1cw2 Na
  Title: crystal structure of the complex of bacterial tryptophan synthase with the transition state analogue inhibitor 4-(2- hydroxyphenylsulfinyl)-butylphosphonic acid
  Author: a. sachpatzidis, c. dealwis, j. b. lubetsky, p. h. liang, k. s. anderson, e. lolis
  Keywords: enzyme-inhibitor complex, lyase
  
• 1c2b.pdb. hydrolase 26-jul-99 1c2b
  Title: electrophorus electricus acetylcholinesterase
  Author: y. bourne, p. marchot
  Keywords: alpha/beta hydrolase, tetramer
  
• 1qf2.pdb. hydrolase 06-apr-99 1qf2 Zn Ca Cd
  Title: thermolysin (e.c.3.4.24.27) complexed with (2-sulphanyl-3- phenylpropanoyl)-gly-(5-phenylproline). parameters for zn- monodentation of mercaptoacyldipeptides in metalloendopeptidase
  Author: j. -f. gaucher, m. selkti, g. tiraboschi, t. prange, b. p. roques, a. tomas, m. c. fournie-zaluski
  Keywords: zn metallopeptidase, hydrolase
  
• 1qs2.pdb. toxin 25-jun-99 1qs2
  Title: crystal structure of vip2 with nad
  Author: s. han, j. a. craig, c. d. putnam, n. b. carozzi, j. a. tainer
  Keywords: protein-nad complex, binary toxin
  
• 1dl3.pdb. isomerase 08-dec-99 1dl3
  Title: crystal structure of mutually generated monomers of dimeric phosphoribosylantranilate isomerase from thermotoga maritima
  Author: r. thoma, m. hennig, r. sterner, k. kirschner
  Keywords: isomerase, oligomerisation, thermostability, thermotoga maritima, protein engineering, dimer evolution
  
• 1d03.pdb. electron transport 08-sep-99 1d03
  Title: refined structures of oxidized flavodoxin from anacystis nidulans
  Author: c. l. drennan, k. a. pattridge, c. h. weber, a. l. metzger, d. m. hoover, m. l. ludwig
  Keywords: fmn binding, redox potential, electron transport
  
• 1d0s.pdb. transferase 14-sep-99 1d0s
  Title: crystal structure of nicotinate mononucleotide : 5,6- dimethylbenzimidazole phosphoribosyltransferase (cobt) from salmonella typhimurium complexed with 5, 6- dimethylbenzimidazole
  Author: c. -g. cheong, j. c. escalante-semerena, i. rayment
  Keywords: phosphoribosyl transferase
  
• 1cc3.pdb. electron transport 03-mar-99 1cc3 Cu
  Title: purple cua center
  Author: h. robinson, m. c. ang, y. -g. gao, m. t. hay, y. lu, a. h. -j. wang
  Keywords: electron transport
  
• 6std.pdb. lyase 11-feb-99 6std Cl Br Ca
  Title: scytalone dehydratase plus inhibitor 3
  Author: z. wawrzak, t. sandalova, j. j. steffens, g. s. basarab, t. lundqvist, y. lindqvist, d. b. jordan
  
  
• 7std.pdb. lyase 11-feb-99 7std Cl Ca
  Title: scytalone dehydratase plus inhibitor 4
  Author: z. wawrzak, t. sandalova, j. j. steffens, g. s. basarab, t. lundqvist, y. lindqvist, d. b. jordan
  
  
• 4std.pdb. lyase 10-feb-99 4std F Br
  Title: high resolution structures of scytalone dehydratase- inhibitor complexes crystallized at physiological ph
  Author: z. wawrzak, t. sandalova, j. j. steffens, g. s. basarab, t. lundqvist, y. lindqvist, d. b. jordan
  
  
• 5std.pdb. lyase 10-feb-99 5std F Ca
  Title: scytalone dehydratase plus inhibitor 2
  Author: z. wawrzak, t. sandalova, j. j. steffens, g. s. basarab, t. lundqvist, y. lindqvist, d. b. jordan
  
  
• 1d04.pdb. electron transport 08-sep-99 1d04
  Title: comparisons of wild type and mutant flavodoxins from anacystis nidulans. structural determinants of the redox potentials.
  Author: d. m. hoover, c. l. drennan, a. l. metzger, c. osborne, c. h. weber, k. a. pattridge, m. l. ludwig
  Keywords: fmn binding, redox potential, electron transport
  
• 1b4t.pdb. oxidoreductase 23-dec-98 1b4t Cl Cu Zn
  Title: h48c yeast cu(ii)/zn superoxide dismutase room temperature (298k) structure
  Author: p. j. hart, m. m. balbirnie, n. l. ogihara, a. m. nersissian, m. s. weiss, j. s. valentine, d. eisenberg
  Keywords: copper, zinc, oxidoreductase
  
• 1c9d.pdb. lyase 02-aug-99 1c9d F Na
  Title: crystal structure of the complex of bacterial tryptophan synthase with the transition state analogue inhibitor 4-(2- hydroxy-4-fluorophenylthio)-butylphosphonic acid
  Author: e. lolis, a. sachpatzidis
  Keywords: enzyme-inhibitor complex, lyase
  
• 1dou.pdb. deoxyribonucleic acid 21-dec-99 1dou Mg
  Title: monovalent cations sequester within the a-tract minor groove of [d(cgcgaattcgcg)]2
  Author: k. k. woods, l. mcfail-isom, c. c. sines, s. b. howerton, r. k. stephens, l. d. williams
  Keywords: cation binding, deoxyribonucleic acid
  
• 1czu.pdb. electron transport 07-sep-99 1czu
  Title: refined structures of oxidized flavodoxin from anacystis nidulans
  Author: c. l. drennan, k. a. pattridge, c. h. weber, a. l. metzger, d. m. hoover, m. l. ludwig
  Keywords: fmn binding, redox potential, crystal packing, electron transport
  
• 1c3e.pdb. transferase 27-jul-99 1c3e
  Title: new insights into inhibitor design from the crystal structure and nmr studies of e. coli gar transformylate in complex with beta-gar and 10-formyl-5,8,10-trideazafolic acid.
  Author: s. e. greasley, m. m. yamashita, h. cai, s. j. benkovic, d. l. boger, i. a. wilson
  Keywords: anti-cancer agent, inhibitor complex, transferase
  
• 1d0v.pdb. transferase 14-sep-99 1d0v
  Title: crystal structure of nicotinate mononucleotide:5,6- dimethylbenzimidazole phosphoribosyltransferase (cobt) from salmonella typhimurium complexed with its reaction products determined to 1.9 a resolution
  Author: c. -g. cheong, j. c. escalante-semerena, i. rayment
  Keywords: phosphoribosyltransferase
  
• 1ck6.pdb. oxidoreductase 28-apr-99 1ck6 Fe Ca
  Title: binding mode of salicylhydroxamic acid to arthromyces ramosus peroxidase
  Author: k. tsukamoto, h. itakura, k. sato, k. fukuyama, s. miura, s. takahashi, h. ikezawa, t. hosoya
  Keywords: glycoprotein, peroxidase
  
• 1qgf.pdb. hydrolase 27-apr-99 1qgf Ca
  Title: porcine pancreatic elastase complexed with (3r, 4s)n-para- toluenesulphonyl-3-ethyl-4-(carboxylic acid)pyrrolidin-2-one
  Author: r. c. wilmouth, s. kassamally, n. j. westwood, r. j. sheppard, t. d. w. claridge, p. a. wright, g. j. pritchard, c. j. schofield
  Keywords: hydrolase, serine proteinase
  
• 1qu6.pdb. transferase 08-jul-99 1qu6 (NMR, 21 structures)
  Title: structure of the double-stranded rna-binding domain of the protein kinase pkr reveals the molecular basis of its dsrna- mediated activation
  Author: s. nanduri, b. w. carpick, y. yang, b. r. g. williams, j. qin
  Keywords: nmr, pkr, solution structure, protein kinase, transferase
  
• 1qqv.pdb. contractile protein 08-jun-99 1qqv (NMR, minimized average structure)
  Title: solution structure of the headpiece domain of chicken villin
  Author: d. vardar, d. a. buckley, b. s. frank, c. j. mcknight
  Keywords: salt-bridge, contractile protein
  
• 1dgw.pdb. plant protein 26-nov-99 1dgw
  Title: structure of the rhombohedral crystal of canavalin from jack bean
  Author: t. -p. ko, a. mcpherson
  Keywords: loops with alpha helices, merohedral/ hemihedral twinning, plant protein
  
• 1ch8.pdb. ligase 31-mar-99 1ch8 Mg
  Title: structure of adenylosuccinate synthetase from e. coli complexed with a stringent effector, ppg2':3'p
  Author: z. hou, m. cashel, h. j. fromm, r. b. honzatko
  Keywords: adenylosuccinate synthetase, gtp-hydrolysing enzymes, purine 2 nucleotide biosynthesis, ppgpp, ppg2':3'p, stringent effector
  
• 1czh.pdb. electron transport 03-sep-99 1czh
  Title: comparisons of wild type and mutant flavodoxins from anacystis nidulans. structural determinants of the redox potentials.
  Author: d. m. hoover, c. l. drennan, a. l. metzger, c. osborne, c. h. weber, k. a. pattridge, m. l. ludwig
  Keywords: redox potentials, fmn binding, electron transport
  
• 2loi.pdb. immune system 09-mar-99 2loi (theoretical model)
  Title: immunoglobulin lambda light chain dimer loi from a human patient
  Author: t. s. jokiranta, a. solomon, m. k. pangburn, p. f. zipfel, s. meri
  Keywords: complement, autoantibody, autoimmunity, antigen binding, human, factor h, immune system
  
• 1cx9.pdb. lyase 29-aug-99 1cx9 Na
  Title: crystal structure of the complex of bacterial tryptophan synthase with the transition state analogue inhibitor 4-(2- aminophenylthio)-butylphosphonic acid
  Author: a. sachpatzidis, c. dealwis, j. b. lubetsky, p. h. liang, k. s. anderson, e. lolis
  Keywords: enzyme-inhibitor complex, lyase
  
• 1qti.pdb. hydrolase 28-jun-99 1qti
  Title: acetylcholinesterase (e.c.3.1.1.7)
  Author: c. bartolucci, e. perola, c. pilger, g. fels, d. lamba
  Keywords: drug, serine hydrolase, alpha/beta hydrolase, neurotransmitter cleaveage, catalytic triad
  
• 1czk.pdb. electron transport 03-sep-99 1czk
  Title: comparisons of wild type and mutant flavodoxins from anacystis nidulans. structural determinants of the redox potentials.
  Author: d. m. hoover, c. l. drennan, a. l. metzger, c. osborne, c. h. weber, k. a. pattridge, m. l. ludwig
  Keywords: redox potential, fmn binding, electron transport
  
• 1b4l.pdb. oxidoreductase 22-dec-98 1b4l Cu Zn
  Title: 15 atmosphere oxygen yeast cu/zn superoxide dismutase room temperature (298k) structure
  Author: p. j. hart, m. m. balbirnie, n. l. ogihara, a. m. nersissian, m. s. weiss, j. s. valentine, d. eisenberg
  Keywords: copper, zinc, oxidoreductase
  
• 1czl.pdb. electron transport 03-sep-99 1czl
  Title: comparisons of wild type and mutant flavodoxins from anacystis nidulans. structural determinants of the redox potentials.
  Author: d. m. hoover, c. l. drennan, a. l. metzger, c. osborne, c. h. weber, k. a. pattridge, m. l. ludwig
  Keywords: fmn binding, redox potential, electron transport
  
• 1qnl.pdb. binding protein 15-oct-99 1qnl
  Title: amide receptor/negative regulator of the amidase operon of pseudomonas aeruginosa (amic) complexed with butyramide
  Author: l. h. pearl, b. p. o'hara, s. m. roe
  Keywords: gene regulator, receptor
  
• 1d4m.pdb. virus/viral protein 04-oct-99 1d4m
  Title: the crystal structure of coxsackievirus a9 to 2.9 a resolution
  Author: e. hendry, h. hatanaka, e. fry, m. smyth, j. tate, g. stanway, j. santti, m. maaronen, t. hyypia, d. stuart
  Keywords: rgd, uncoating, virus-receptor interaction, win compound, virus/viral protein
  
• 1czn.pdb. electron transport 03-sep-99 1czn
  Title: refined structures of oxidized flavodoxin from anacystis nidulans
  Author: w. w. smith, k. a. pattridge, c. l. luschinsky, m. l. ludwig
  Keywords: fmn binding, redox potential, electron transport
  
• 1czo.pdb. electron transport 03-sep-99 1czo
  Title: comparisons of wild type and mutant flavodoxins from anacystis nidulans. structural determinants of the redox potentials.
  Author: d. m. hoover, c. l. drennan, a. l. metzger, c. osborne, c. h. weber, k. a. pattridge, m. l. ludwig
  Keywords: fmn binding, redox postential, electron transport