Recent PDB releases or updates: week of 15 December 1999

• 1cw0.pdb. hydrolase/dna 25-aug-99 1cw0 Mg Zn
  Title: crystal structure analysis of very short patch repair (vsr) endonuclease in complex with a duplex dna
  Author: s. e. tsutakawa, h. jingami, k. morikawa
  Keywords: mismatch, intercalation, zinc, hydrolase/dna
  
• 1cs0.pdb. ligase 16-aug-99 1cs0x-ray diffraction Cl Mn K
  Title: crystal structure of carbamoyl phosphate synthetase complexed at cys269 in the small subunit with the tetrahedral mimic l-glutamate gamma-semialdehyde
  Author: j. b. thoden, x. huang, f. m. raushel, h. m. holden
  Keywords: amidotransferase, substrate channeling, ligase
  
• 1c30.pdb. ligase 24-jul-99 1c30x-ray diffraction Cl Mn K
  Title: crystal structure of carbamoyl phosphate synthetase: small subunit mutation c269s
  Author: j. b. thoden, x. huang, f. m. raushel, h. m. holden
  Keywords: atp-grasp, substrate channeling, ligase
  
• 1qup.pdb. chaperone 01-jul-99 1qupx-ray diffraction Se
  Title: crystal structure of the copper chaperone for superoxide dismutase
  Author: a. l. lamb, a. k. wernimont, r. a. pufahl, t. v. o'halloran, a. c. rosenzweig
  Keywords: beta-alpha-beta-beta-alpha-beta and beta barrel, chaperone
  
• 1qr0.pdb. transferase 17-jun-99 1qr0x-ray diffraction Mg
  Title: crystal structure of the 4'-phosphopantetheinyl transferase sfp-coenzyme a complex
  Author: k. reuter, r. m. mofid, a. m. marahiel, r. ficner
  Keywords: transferase
  
• 1jba.pdb. lyase 03-apr-99 1jbanmr, 22 structures Ca
  Title: unmyristoylated gcap-2 with three calcium ions bound
  Author: j. b. ames, a. m. dizhoor, m. ikura, k. palczewski, l. stryer
  Keywords: calcium-binding protein, guanylyl cyclase regulation, lyase
  
• 1dha.pdb. immune system 28-nov-99 1dhatheoretical model
  Title: synthetic human combinatorial antibody library (hucal) framework vh 1a
  Author: a. knappik, p. pack, l. ge, a. honegger, m. fischer, g. wellnhofer, a. hoess, j. woelle, a. pluckthun, b. virnekaes
  Keywords: immune system
  
• 1dhq.pdb. immune system 28-nov-99 1dhqtheoretical model
  Title: synthetic human combinatorial antibody library (hucal) framework vh 2
  Author: a. knappik, p. pack, l. ge, a. honegger, m. fischer, g. wellnhofer, a. hoess, j. woelle, a. pluckthun, b. virnekaes
  Keywords: immune system
  
• 1dj1.pdb. oxidoreductase 30-nov-99 1dj1x-ray diffraction Fe
  Title: crystal structure of r48a mutant of cytochrome c peroxidase
  Author: j. hirst, d. b. goodin
  Keywords: cavity mutant, oxidoreductase
  
• 1b3q.pdb. transferase 14-dec-98 1b3qx-ray diffraction Hg
  Title: crystal structure of chea-289, a signal transducing histidine kinase
  Author: a. m. bilwes, l. a. alex, b. r. crane, m. i. simon
  Keywords: signal transduction, chemotaxis, multi- domains protein, transferase
  
• 1dlb.pdb. virus/viral protein 09-dec-99 1dlbx-ray diffraction
  Title: helical interactions in the hiv-1 gp41 core reveals structural basis for the inhibitory activity of gp41 peptides
  Author: w. shu, j. liu, h. ji, l. rading, s. jiang, m. lu
  Keywords: hiv-1, membrane fusion, hiv-1 inhibition, virus/viral protein
  
• 1df2.pdb. hydrolase/hydrolase inhibitor 17-nov-99 1df2theoretical model
  Title: knowledge based model of a serine protease inhibitor of cucurbitaceae family (theoretical model) bound to trypsin
  Author: a. banerjee, s. chakraborty, s. bhattacharyya
  Keywords: trypsin inhibitor complex, hydrolase/hydrolase inhibitor
  
• 1dab.pdb. cell adhesion 31-oct-99 1dabx-ray diffraction
  Title: the structure of bordetella pertussis virulence factor p.69 pertactin
  Author: p. emsley, i. g. charles, n. f. fairweather, n. w. isaacs
  Keywords: cell adhesion
  
• 1b12.pdb. hydrolase 24-nov-99 1b12x-ray diffraction
  Title: crystal structure of type 1 signal peptidase from escherichia coli in complex with a beta-lactam inhibitor
  Author: m. paetzel, r. dalbey, n. c. j. strynadka
  Keywords: serine-dependant hydrolase, signal peptide processing, protein translocation, membrane bound proteinase, membrane protein
  
• 1b2r.pdb. oxidoreductase 27-nov-98 1b2rx-ray diffraction
  Title: ferredoxin-nadp+ reductase (mutation: e 301 a)
  Author: j. a. hermoso, t. mayoral, m. medina, m. martinez-ripoll, m. martinez- julvez, j. sanz- aparicio, c. gomez-moreno
  Keywords: flavoprotein, nadp, fad, fnr, nadp reductase
  
• 1tl2.pdb. sugar binding protein 14-dec-98 1tl2x-ray diffraction
  Title: tachylectin-2 from tachypleus tridentatus (japanese horseshoe crab)
  Author: h. -g. beisel, s. kawabata, s. iwanaga, r. huber, w. bode
  Keywords: horseshoe crab, n-acetylglucosamine, beta- propeller, sugar binding protein
  
• 1r1b.pdb. ligase 15-dec-98 1r1bnmr, minimized average structure
  Title: eprs second repeated element, nmr, minimized average structure
  Author: b. cahuzac, e. berthonneau, n. birlirakis, m. mirande, e. guittet
  Keywords: protein transcription
  
• 1dh4.pdb. immune system 28-nov-99 1dh4theoretical model
  Title: synthetic human combinatorial antibody library (hucal) framework vl kappa 3
  Author: a. knappik, p. pack, l. ge, a. honegger, m. fischer, g. wellnhofer, a. hoess, j. woelle, a. plueckthun, b. virnekaes
  Keywords: immune system
  
• 1d1d.pdb. virus/viral protein 15-sep-99 1d1dnmr, 20 structures
  Title: nmr solution structure of the capsid protein from rous sarcoma virus
  Author: r. campos-olivas, j. l. newman, m. f. summers
  Keywords: virus/viral protein
  
• 1b3d.pdb. hydrolase/hydrolase inhibitor 09-dec-98 1b3dx-ray diffraction Zn Ca
  Title: stromelysin-1
  Author: l. chen, t. j. rydel, c. m. dunaway, s. pikul, k. m. dunham, f. gu, b. l. barnett
  Keywords: matrix metalloproteinase, osteoarthritis, protein crystal structure, structure-based drug design, protein, hydrolase/hydrolase inhibitor
  
• 1dh5.pdb. immune system 28-nov-99 1dh5theoretical model
  Title: synthetic human combinatorial antibody library (hucal) framework vl kappa 3
  Author: a. knappik, p. pack, l. ge, a. honegger, m. fischer, g. wellnhofer, a. hoess, j. woelle, a. pluckthun, b. virnekaes
  Keywords: immune system
  
• 1dhu.pdb. immune system 28-nov-99 1dhutheoretical model
  Title: synthetic human combinatorial antibody library (hucal) framework vh 3
  Author: a. knappik, p. pack, l. ge, a. honegger, m. fischer, g. wellnhofer, a. hoess, j. woelle, a. pluckthun, b. virnekaes
  Keywords: immune system
  
• 1dj5.pdb. oxidoreductase 01-dec-99 1dj5x-ray diffraction Fe
  Title: crystal structure of r48a mutant of cytochrome c peroxidase with n-hydroxyguanidine bound
  Author: j. hirst, d. b. goodin
  Keywords: cavity mutant, oxidoreductase
  
• 1dgu.pdb. blood clotting 25-nov-99 1dgunmr, minimized average structure
  Title: homology-based model of calcium-saturated cib (calcium-and integrin-binding protein)
  Author: p. m. hwang, h. j. vogel
  Keywords: ef-hands, blood clotting
  
• 1qe5.pdb. transferase 13-jul-99 1qe5x-ray diffraction Ca
  Title: purine nucleoside phosphorylase from cellulomonas sp. in complex with phosphate
  Author: j. tebbe, a. bzowska, b. wielgus-kutrowska, w. schroeder, z. kazimierczuk, d. shugar, w. saenger, g. koellner
  Keywords: purine nucleoside phosphorylase, transferase
  
• 1dh6.pdb. immune system 28-nov-99 1dh6theoretical model
  Title: synthetic human combinatorial antibody library (hucal) framework vl kappa 4
  Author: a. knappik, p. pack, l. ge, a. honegger, m. fischer, g. wellnhofer, a. hoess, j. woelle, a. pluckthun, b. virnekaes
  Keywords: immune system
  
• 1dhv.pdb. immune system 28-nov-99 1dhvtheoretical model
  Title: synthetic human combinatorial antibody library (hucal) framework vh 4
  Author: a. knappik, p. pack, l. ge, a. honegger, m. fischer, g. wellnhofer, a. hoess, j. woelle, a. pluckthun, b. virnekaes
  Keywords: immune system
  
• 1djf.pdb. de novo protein 03-dec-99 1djfnmr
  Title: nmr structure of a model hydrophilic amphipathic helical basic peptide
  Author: r. montserret, m. j. mcleish, a. bockmann, c. geourjon, f. penin
  Keywords: de novo protein
  
• 1dgv.pdb. blood clotting 25-nov-99 1dgvnmr, minimized average structure
  Title: homology-based model of apo cib (calcium-and integrin- binding protein)
  Author: p. m. hwang, h. j. vogel
  Keywords: ef-hand, blood clotting
  
• 1qgv.pdb. transcription 06-may-99 1qgvx-ray diffraction
  Title: human spliceosomal protein u5-15kd
  Author: k. reuter, s. nottrott, p. fabrizio, r. luehrmann, r. ficner
  Keywords: snrnp, thioredoxin, transcription
  
• 1dh7.pdb. immune system 28-nov-99 1dh7theoretical model
  Title: synthetic human combinatorial antibody library (hucal) framework vl lambda 1
  Author: a. knappik, p. pack, l. ge, a. honegger, m. fischer, g. wellnhofer, a. hoess, j. woelle, a. pluckthun, b. virnekaes
  Keywords: immune system
  
• 1dhw.pdb. immune system 28-nov-99 1dhwtheoretical model
  Title: synthetic human combinatorial antibody library (hucal) framework vh 5
  Author: a. knappik, p. pack, l. ge, a. honegger, m. fischer, g. wellnhofer, a. hoess, j. woelle, a. pluckthun, b. virnekaes
  Keywords: immune system
  
• 1dfw.pdb. immune system 22-nov-99 1dfwftir, 10 structures
  Title: conformational mapping of the n-terminal segment of surfactant protein b in lipid using 13c-enhanced fourier transform infrared spectroscopy (ftir)
  Author: l. m. gordon, k. y. c. lee, m. m. lipp, j. a. zasadzinski, f. j. walther, m. a. sherman, a. j. waring
  Keywords: saposin, immune system
  
• 1cc7.pdb. metal transport 04-mar-99 1cc7x-ray diffraction
  Title: crystal structure of the atx1 metallochaperone protein
  Author: a. c. rosenzweig, d. l. huffman, m. y. r. a. pufahl, t. v. o. hou, a. k. wernimont
  Keywords: mercury coordination, metal transport
  
• 1dh8.pdb. immune system 28-nov-99 1dh8theoretical model
  Title: synthetic human combinatorial antibody library (hucal) framework vl lambda 2
  Author: a. knappik, p. pack, l. ge, a. honegger, m. fischer, g. wellnhofer, a. hoess, j. woelle, a. pluckthun, b. virnekaes
  Keywords: immune system
  
• 1dj8.pdb. structural protein 02-dec-99 1dj8x-ray diffraction
  Title: crystal structure of e. coli periplasmic protein hdea
  Author: k. s. gajiwala, s. k. burley
  Keywords: structural protein
  
• 1cc8.pdb. metal transport 04-mar-99 1cc8x-ray diffraction Hg
  Title: crystal structure of the atx1 metallochaperone protein
  Author: a. c. rosenzweig, d. l. huffman, m. y. r. a. pufahl, t. v. o. hou, a. k. wernimont
  Keywords: mercury coordination, metal transport
  
• 1dh9.pdb. immune system 28-nov-99 1dh9theoretical model
  Title: synthetic human combinatorial antibody library (hucal) framework vl lambda 3
  Author: a. knappik, p. pack, l. ge, a. honegger, m. fischer, g. wellnhofer, a. hoess, j. woelle, a. pluckthun, b. virnekaes
  Keywords: immune system
  
• 1ct9.pdb. ligase 20-aug-99 1ct9x-ray diffraction Cl U
  Title: crystal structure of asparagine synthetase b from escherichia coli
  Author: t. m. larsen, s. k. boehlein, s. m. schuster, n. g. j. richards, j. b. thoden, h. m. holden, i. rayment
  Keywords: substrate channeling, asparagine biosynthesis, ligase
  
• 1dhz.pdb. immune system 28-nov-99 1dhztheoretical model
  Title: synthetic human combinatorial antibody library (hucal) framework vh 6
  Author: a. knappik, p. pack, l. ge, a. honegger, m. fischer, g. wellnhofer, a. hoess, j. woelle, a. pluckthun, b. virnekaes
  Keywords: immune system
  
• 1c8z.pdb. immune system 30-jul-99 1c8zx-ray diffraction
  Title: c-terminal domain of mouse brain tubby protein
  Author: t. j. boggon, s. c. myers, l. shapiro
  Keywords: beta-barrel, filled-beta-roll, 12- stranded-beta-barrel, helix-filled-barrel, obesity blindness, deafness, immune system
  
• 1d9k.pdb. immune system 28-oct-99 1d9kx-ray diffraction
  Title: crystal structure of complex between d10 tcr and pmhc i- ak/ca
  Author: e. l. reinherz, k. tan, l. tang, p. kern, j. -h. liu, y. xiong, r. e. hussey, a. smolyar, b. hare, r. zhang, a. joachimiak, h. -c. chang, g. wagner, j-h. wang
  Keywords: mhc class ii, d10, i-ak, immune system
  
• 1b3k.pdb. blood clotting 11-dec-98 1b3kx-ray diffraction
  Title: plasminogen activator inhibitor-1
  Author: a. m. sharp, p. e. stein, n. s. pannu, r. j. read
  Keywords: pai-1, inhibitor, blood clotting
  
• 2pfl.pdb. lyase 26-may-99 2pflx-ray diffraction Cl Na
  Title: crystal structure of pfl from e.coli
  Author: a. becker, k. fritz-wolf, w. kabsch, j. knappe, s. schultz, a. f. v. wagner
  Keywords: transferase, glucose metabolism, lyase
  
• 1dwl.pdb. electron transfer 08-dec-99 1dwlnmr, 3 structures; theoretical model Fe
  Title: the ferredoxin-cytochrome complex using heteronuclear nmr and docking simulation
  Author: x. morelli, f. guerlesquin, m. czjzek, p. n. palma
  Keywords: ferredoxin-cytochrome complex, model, heteronuclear nmr, docking
  
• 1dho.pdb. immune system 28-nov-99 1dhotheoretical model
  Title: synthetic human combinatorial antibody library (hucal) framework vh 1b
  Author: a. knappik, p. pack, l. ge, a. honegger, m. fischer, g. wellnhofer, a. hoess, j. woelle, a. pluckthun, b. virnekaes
  Keywords: immune system
  
• 1dfo.pdb. transferase 20-nov-99 1dfox-ray diffraction
  Title: crystal structure at 2.4 angstrom resolution of e. coli serine hydroxymethyltransferase in complex with glycine and 5-formyl tetrahydrofolate
  Author: j. n. scarsdale, s. radaev, g. kazanina, v. schirch, h. t. wright
  Keywords: amino transferase, (aat)-like fold
  
• 1c3o.pdb. ligase 28-jul-99 1c3ox-ray diffraction Cl Mn K
  Title: crystal structure of the carbamoyl phosphate synthetase: small subunit mutant c269s with bound glutamine
  Author: j. b. thoden, x. huang, f. m. raushel, h. m. holden
  Keywords: michaelis complex, atp-grasp, ligase