Recent PDB releases or updates: week of 8 December 1999

• 3rap.pdb. signaling protein 31-may-99 3rap Mg
  Title: structure of the small g protein rap2 in a non catalytic complex with gtp
  Author: j. menetrey, j. cherfils
  Keywords: ras, gtpase, rap2, signaling protein
  
• 1d7p.pdb. blood clotting 19-oct-99 1d7px-ray diffraction
  Title: crystal structure of the c2 domain of human factor viii at 1.5 a resolution at 1.5 a
  Author: k. p. pratte, b. w. shen, b. l. stoddard
  Keywords: blood clotting
  
• 1fdp.pdb. hydrolase 03-dec-98 1fdpx-ray diffraction
  Title: proenzyme of human complement factor d, recombinant profactor d
  Author: h. jing, k. j. macon, d. moore, l. j. delucas, j. e. volanakis, s. v. l. narayana
  Keywords: complement, factor d, profactor d, zymogen, proenzyme, hydrolase
  
• 1cl0.pdb. oxidoreductase 04-may-99 1cl0x-ray diffraction
  Title: crystal structure of reduced thioredoxin reductase from escherichia coli.
  Author: b. w. lennon, c. h. williams jr, m. l. ludwig
  Keywords: oxidoreductase
  
• 1qu0.pdb. metal binding protein 05-jul-99 1qu0x-ray diffraction Ca
  Title: crystal structure of the fifth laminin g-like module of the mouse laminin alpha2 chain
  Author: e. hohenester, d. tisi, j. f. talts, r. timpl
  Keywords: calcium-binding protein, metal binding protein
  
• 1diq.pdb. oxidoreductase 29-nov-99 1diqx-ray diffraction Cl Fe
  Title: crystal structure of p-cresol methylhydroxylase with substrate bound
  Author: l. cunane, z. w. chen, n. shamala, f. s. mathews, c. s. cronin, w. s. mcintire
  Keywords: electron-transfer, fad, heme, p-cresol, oxidoreductase
  
• 1df1.pdb. oxidoreductase 16-nov-99 1df1x-ray diffraction Zn Fe
  Title: murine inosoxy dimer with isothiourea bound in the active site
  Author: b. r. crane, r. j. rosenfeld, a. s. arvai, d. k. ghosh, s. ghosh, j. a. tainer, d. j. stuehr, e. d. getzoff
  Keywords: nos, heme, zinc, isothiourea, inos, oxidoreductase
  
• 1dfa.pdb. hydrolase 18-nov-99 1dfax-ray diffraction
  Title: crystal structure of pi-scei in c2 space group
  Author: d. hu, m. crist, x. duan, f. a. quiocho, f. s. gimble
  Keywords: homing endonuclease, hydrolase
  
• 1d9q.pdb. hydrolase 29-oct-99 1d9qx-ray diffraction
  Title: oxidized pea fructose-1,6-bisphosphatase form 1
  Author: m. chiadmi, a. navaza, m. miginiac-maslow, j. -p. jacquot, j. cherfils
  Keywords: photosynthesis, redox regulation, thioredoxin, allostery, disulfide bridge, calvin cycle, hydrolase
  
• 1d7a.pdb. lyase 16-oct-99 1d7ax-ray diffraction Se
  Title: crystal structure of e. coli pure-mononucleotide complex.
  Author: i. i. mathews, t. j. kappock, j. stubbe, s. e. ealick
  Keywords: aminoimidazole ribonucleotide (air), lyase
  
• 1qla.pdb. oxidoreductase 24-aug-99 1qlax-ray diffraction Fe Ca
  Title: respiratory complex ii-like fumarate reductase from wolinella succinogenes
  Author: c. r. d. lancaster, a. kroeger, m. auer, h. michel
  Keywords: succinate dehydrogenase, respiratory chain, citric acid cycle, flavoprotein, iron-sulphur protein, dihaem cytochrome b
  
• 1qva.pdb. gene regulation 07-jul-99 1qvax-ray diffraction
  Title: yeast initiation factor 4a n-terminal domain
  Author: e. r. johnson, d. b. mckay
  Keywords: dead box, eif4a, gene regulation
  
• 1di2.pdb. rna binding protein/rna 28-nov-99 1di2x-ray diffraction
  Title: crystal structure of a dsrna-binding domain complexed with dsrna: molecular basis of double-stranded rna-protein interactions
  Author: j. m. ryter, s. c. schultz
  Keywords: double stranded rna, protein-rna interactions, rna-bining protein, rna binding protein/rna
  
• 1d4r.pdb. ribonucleic acid 05-oct-99 1d4rx-ray diffraction Mg
  Title: 29-mer fragment of human srp rna helix 6
  Author: k. wild, o. weichenrieder, g. a. leonard, s. cusack
  Keywords: ggag/gagg bulge, ac/ca tandem mismatch, gu wobble base pairs, 2'3'-cyclic phosphate, ribonucleic acid
  
• 1b6r.pdb. lyase 17-jan-99 1b6rx-ray diffraction
  Title: n5-carboxyaminoimidazole ribonucleotide synthetase from e. coli
  Author: j. b. thoden, t. j. kappock, j. stubbe, h. m. holden
  Keywords: carboxyphosphate, purine biosynthesis, lyase
  
• 1b22.pdb. dna binding protein 04-dec-98 1b22nmr, 30 models
  Title: rad51 (n-terminal domain)
  Author: h. aihara, y. ito, h. kurumizaka, s. yokoyama, t. shibata
  Keywords: dna binding protein
  
• 1b3b.pdb. oxidoreductase 07-dec-98 1b3bx-ray diffraction
  Title: thermotoga maritima glutamate dehydrogenase mutant n97d, g376k
  Author: s. knapp, j. h. g. lebbink, j. van der oost, w. m. devos, d. rice, r. ladenstein
  Keywords: glutamate, dehydrogenase, mutant, oxidoreductase
  
• 1qlb.pdb. oxidoreductase 24-aug-99 1qlbx-ray diffraction Fe Ca
  Title: respiratory complex ii-like fumarate reductase from wolinella succinogenes
  Author: c. r. d. lancaster, a. kroeger, m. auer, h. michel
  Keywords: succinate dehydrogenase, respiratory chain, citric acid cycle, flavoprotein, iron-sulphur protein, dihaem cytochrome b
  
• 1qgb.pdb. cell adhesion 21-apr-99 1qgbnmr, 24 structures
  Title: solution structure of the n-terminal f1 module pair from human fibronectin
  Author: j. r. potts, j. r. bright, d. bolton, a. r. pickford, i. d. campbell
  Keywords: cell adhesion
  
• 1di3.pdb. hydrolase 28-nov-99 1di3x-ray diffraction Na
  Title: role of amino acid residues at turns in the conformational stability and folding of human lysozyme
  Author: k. takano, y. yamagata, k. yutani
  Keywords: turn, mutant, hydrolase
  
• 1dfs.pdb. metal binding protein 20-nov-99 1dfsnmr Cd
  Title: solution structure of the alpha-domain of mouse metallothionein-1
  Author: k. zangger, g. oz, j. d. otvos, i. m. armitage
  Keywords: cd-s cluster, half turn, metal binding protein
  
• 1d8s.pdb. hydrolase 25-oct-99 1d8sx-ray diffraction
  Title: escherichia coli f1 atpase
  Author: a. c. hausrath, g. gruber, b. w. matthews, r. a. capaldi
  
  
• 1b6s.pdb. lyase 18-jan-99 1b6sx-ray diffraction Mg
  Title: structure of n5-carboxyaminoimidazole ribonucleotide synthetase
  Author: j. b. thoden, t. j. kappock, j. stubbe, h. m. holden
  Keywords: carboxyphosphate, purine biosynthesis, lyase
  
• 462d.pdb. ribonucleic acid 18-mar-99 462dx-ray diffraction Mg
  Title: crystal structure of the hiv-1 genomic rna dimerization initiation site
  Author: e. ennifar, m. yusupov, p. walter, r. marquet, c. ehresmann, b. ehresmann, p. dumas
  Keywords: rna duplex, mismatch, bulges, magnesium binding, ribonucleic acid
  
• 473d.pdb. deoxyribonucleic acid 18-may-99 473dx-ray diffraction Ni
  Title: ni2+/guanine interactions and netropsin/guanine stacking in d(cgtatatacg)2
  Author: n. g. a. abrescia, l. malinina, j. a. subirana
  Keywords: ni2+/guanine interactions, minor groove binding, deoxyribonucleic acid
  
• 1di4.pdb. hydrolase 29-nov-99 1di4x-ray diffraction Na
  Title: role of amino acid residues at turns in the conformational stability and folding of human lysozyme
  Author: k. takano, y. yamagata, k. yutani
  Keywords: turn, mutant, hydrolase
  
• 1dft.pdb. metal binding protein 20-nov-99 1dftnmr Cd
  Title: solution structure of the beta-domain of mouse metallothionein-1
  Author: k. zangger, g. oz, j. d. otvos, i. m. armitage
  Keywords: cd-s cluster, metal binding protein
  
• 1dg4.pdb. chaperone 23-nov-99 1dg4nmr, 20 structures
  Title: nmr structure of the substrate binding domain of dnak in the apo form
  Author: m. pellecchia, d. l. montgomery, s. y. stevens, c. w. van der kooi, h. feng, l. m. gierasch, e. r. p. zuiderweg
  Keywords: chaperone, substrate binding domain
  
• 1d9d.pdb. transferase/dna, rna 27-oct-99 1d9dx-ray diffraction Mg Zn
  Title: crystall structure of the complex of dna polymerase i klenow fragment with short dna fragment carrying 2'-0- aminopropyl-rna modifications 5'-d(tcg)-ap(auc)-3'
  Author: m. teplova, s. t. wallace, v. tereshko, g. minasov, a. m. simons, p. d. cook, m. manoharan, m. egli
  Keywords: 2'-o-aminopropyl nucleotides, transferase/dna, rna
  
• 1c5d.pdb. immune system 17-nov-99 1c5dx-ray diffraction
  Title: the crystal structure of the fab fragment of a rat monoclonal antibody against the main immunogenic region of the human muscle acetylcholine receptor
  Author: m. kontou, d. d. leonidas, e. h. vatzaki, p. tsantili, a. mamalaki, n. g. oikonomakos, k. r. acharya, s. j. tzartos
  Keywords: immune system
  
• 1qf4.pdb. ligase 06-apr-99 1qf4x-ray diffraction Mg
  Title: design, synthesis, and x-ray crystal structure of an enzyme bound bisubstrate hybrid inhibitor of adenylosuccinate synthetase
  Author: s. hanessian, p. -p. lu, j. -y. sanceau, p. chemla, k. gohda, r. fonne- pfister, l. prade, s. w. cowan-jacob
  Keywords: synthetase, gtp-binding, gtp- hydrolysing enzymes, ligase
  
• 1qqd.pdb. immune system 03-jun-99 1qqdx-ray diffraction
  Title: crystal structure of hla-cw4, a ligand for the kir2d natural killer cell inhibitory receptor
  Author: q. r. fan, d. c. wiley
  Keywords: alpha helix, beta sheet, immune system
  
• 1di5.pdb. hydrolase 29-nov-99 1di5x-ray diffraction Na
  Title: role of amino acid residues at turns in the conformational stability and folding of human lysozyme
  Author: k. takano, y. yamagata, k. yutani
  Keywords: turn, mutant, hydrolase
  
• 1dfu.pdb. ribosome 21-nov-99 1dfux-ray diffraction Mg
  Title: crystal structure of e.coli ribosomal protein l25 complexed with a 5s rrna fragment at 1.8 a resolution
  Author: m. lu, t. a. steitz
  Keywords: ribosome
  
• 1dcu.pdb. hydrolase 05-nov-99 1dcux-ray diffraction
  Title: redox signaling in the chloroplast: structure of oxidized pea fructose-1,6-bisphosphate phosphatase
  Author: m. chiadmi, a. navaza, m. miginiac-maslow, j. p. jacquot, j. cherfils
  Keywords: photosynthesis, redox regulation, thioredoxin, allostery, hydrolase
  
• 1cm5.pdb. transferase 14-may-99 1cm5x-ray diffraction Na
  Title: crystal structure of c418a,c419a mutant of pfl from e.coli
  Author: a. becker, k. fritz-wolf, w. kabsch, j. knappe, s. schultz, a. f. v. wagner
  Keywords: transferase, glucose metabolism
  
• 1ck5.pdb. ribosome/rna 27-apr-99 1ck5nmr, minimized average structure
  Title: ribosomal protein l30-mrna complex from yeast
  Author: h. mao, s. a. white, j. r. willamson
  Keywords: pre-mrna, mrna, autoregulation, protein- rna complex, ribosome/rna
  
• 1qle.pdb. complex (oxidoreductase/antibody) 29-aug-99 1qlex-ray diffraction Cu Mn Fe Ca
  Title: cryo-structure of the paracoccus denitrificans four-subunit cytochrome c oxidase in the completely oxidized state complexed with an antibody fv fragment
  Author: a. harrenga, h. michel
  Keywords: electron transport, transmembrane, cytochrome oxidase, antibody complex
  
• 1qf5.pdb. ligase 06-apr-99 1qf5x-ray diffraction Mg
  Title: design, synthesis, and x-ray crystal structure of an enzyme bound bisubstrate hybrid inhibitor of adenylosuccinate synthetase
  Author: s. hanessian, p. -p. lu, j. -y. sanceau, p. chemla, l. prade, k. gohda, s. w. cowan- jacob, r. fonne-pfister
  Keywords: synthetase, gtp-binding, gtp- hydrolysing enzymes, ligase
  
• 1d9f.pdb. transferase/dna, rna 27-oct-99 1d9fx-ray diffraction Zn
  Title: crystal structure of the complex of dna polymerase i klenow fragment with dna tetramer carrying 2'-o-(3-aminopropyl)- rna modification 5'-d(tt)-ap(u)-d(t)-3'
  Author: m. teplova, s. t. wallace, v. tereshko, g. minasov, a. m. simons, p. d. cook, m. manoharan, m. egli
  Keywords: 2'-o-aminopropyl nucleotides, transferase/dna, rna
  
• 1b26.pdb. oxidoreductase 04-dec-98 1b26x-ray diffraction
  Title: glutamate dehydrogenase
  Author: s. knapp, w. m. devos, d. rice, r. ladenstein
  Keywords: glutamate, dehydrogenase, oxidoreductase
  
• 1c5f.pdb. isomerase/immune system 22-nov-99 1c5fx-ray diffraction
  Title: crystal structure of the cyclophilin-like domain from brugia malayi complexed with cyclosporin a
  Author: p. j. ellis, c. k. s. carlow, d. ma, p. kuhn
  Keywords: peptidyl-prolyl cis-trans, peptidylprolyl isomerase, cyclosporin, isomerase/immune system
  
• 2tmg.pdb. oxidoreductase 04-dec-98 2tmgx-ray diffraction
  Title: thermotoga maritima glutamate dehydrogenase mutant s128r, t158e, n117r, s160e
  Author: s. knapp, j. h. g. lebbink, j. van der oost, w. m. de vos, d. rice, r. ladenstein
  Keywords: glutamate, dehydrogenase, mutant, oxidoreductase
  
• 1d8h.pdb. hydrolase 24-oct-99 1d8hx-ray diffraction Mn
  Title: x-ray crystal structure of yeast rna triphosphatase in complex with sulfate and manganese ions.
  Author: c. d. lima, l. k. wang, s. shuman
  Keywords: beta subunit, polynucleotide 5'- triphosphatase, mrna processing, mrna capping, nuclear protein beta barrel, catalytic domain, dimer, manganese/sulfate complex, hydrolase
  
• 1d9h.pdb. dna, rna 27-oct-99 1d9hx-ray diffraction
  Title: structural origins of the exonuclease resistance of a zwitterionic rna
  Author: m. teplova, s. t. wallace, v. tereshko, g. minasov, a. m. simons, p. d. cook, m. manoharan, m. egli
  Keywords: a-dna, dna, rna
  
• 1ck8.pdb. ribosome/rna 28-apr-99 1ck8nmr, 21 structures
  Title: rpl30-mrna complex from yeast
  Author: h. mao, s. a. white, j. r. willamson
  Keywords: pre-mrna, mrna, autoregulation, protein- rna complex, nmr, ribosome/rna
  
• 1dii.pdb. oxidoreductase 29-nov-99 1diix-ray diffraction Cl Fe
  Title: crystal structure of p-cresol methylhydroxylase at 2.5 a resolution
  Author: l. cunane, z. w. chen, n. shamala, f. s. mathews, c. n. cronin, w. s. mcintire
  Keywords: electron-transfer, fad, heme, oxidoreductase
  
• 1dg9.pdb. hydrolase 23-nov-99 1dg9x-ray diffraction
  Title: crystal structure of bovine low molecular weight ptpase complexed with hepes
  Author: m. zhang, m. zhou, r. l. van etten, c. v. stauffacher
  Keywords: hepes complex, hydrolase
  
• 1d8i.pdb. hydrolase 24-oct-99 1d8ix-ray diffraction
  Title: x-ray crystal structure of yeast rna triphosphatase in complex with a sulfate ion.
  Author: c. d. lima, l. k. wang, s. shuman
  Keywords: beta subunit, polynucleotide 5'- triphosphatase, mrna processing, mrna capping, nuclear protein beta barrel, catalytic domain, dimer, sulfate complex, hydrolase
  
• 1d8y.pdb. transferase/dna 26-oct-99 1d8yx-ray diffraction Zn
  Title: crystal structure of the complex of dna polymerase i klenow fragment with dna
  Author: m. teplova, s. t. wallace, v. tereshko, g. minasov, a. m. simons, p. d. cook, m. manoharan, m. egli
  Keywords: poly-d(t), transferase/dna
  
• 1c59.pdb. ribosome 28-oct-99 1c59x-ray diffraction
  Title: partial structure of 16s rna of the small ribosomal subunit from thermus thermophilus
  Author: a. tocilj, f. schlunzen, d. janell, m. gluhmann, h. hansen, j. harms, a. bashan, h. bartels, i. agmon, f. franceschi, a. yonath
  Keywords: 30s, thermus thermophilus, 16s rna
  
• 1qt9.pdb. electron transport 01-jul-99 1qt9x-ray diffraction Fe
  Title: oxidized [2fe-2s] ferredoxin from anabaena pcc7119
  Author: r. morales, m. -h. chron, g. hudry-clergeon, y. petillot, s. norager, m. medina, m. frey
  Keywords: electron transport
  
• 1dgz.pdb. ribosome 27-nov-99 1dgznmr, 38 structures Zn
  Title: ribosmal protein l36 from thermus thermophilus: nmr structure ensemble
  Author: t. hard, a. rak, p. allard, l. kloo, m. garber
  Keywords: large ribosomal subunit, zinc binding, beta sheet, ribosome
  
• 1dbz.pdb. hydrolase 03-nov-99 1dbzx-ray diffraction
  Title: c153s mutant of pea fructose-1,6-bisphosphatase
  Author: m. chiadmi, a. navaza, m. miginiac-maslow, j. p. jacquot, j. cherfils
  Keywords: photosynthesis, redox regulation, thioredoxin, allostery, disulfide bridge, calvin cycle, hydrolase
  
• 1fak.pdb. blood clotting 28-dec-98 1fakx-ray diffraction Ca
  Title: human tissue factor complexed with coagulation factor viia inhibited with a bpti-mutant
  Author: e. zhang, r. st charles, a. tulinsky
  Keywords: blood coagulation, serine protease, complex, co-factor, receptor enzyme, inhibitor, gla, egf, complex (serine protease/cofactor/ligand), blood clotting