Recent PDB releases or updates: week of 27 October 1999

• 1qkp.pdb. photoreceptor 30-jul-99 1qkp
  Title: high resolution x-ray structure of an early intermediate in the bacteriorhodopsin photocycle
  Author: k. edman, p. nollert, a. royant, h. belrhali, e. pebay-peyroula, j. hajdu, r. neutze, e. m. landau
  Keywords: photoreceptor, proton pump, membrane protein, retinal protein, intermediate state, photocycle, lipidic cubic phases
  
• 1qgp.pdb. hydrolase 03-may-99 1qgp (NMR, 15 structures)
  Title: nmr structure of the z-alpha domain of adar1, 15 structures
  Author: m. schade, c. j. turner, r. kuehne, p. schmieder, k. lowenhaupt, a. herbert, a. rich, h. oschkinat
  Keywords: z-alpha-z-dna binding domain, rna-editing, z-dna recognition, adar1, helix-turn-helix, hydrolase
  
• 1by1.pdb. transport protein 22-oct-98 1by1 (NMR, 20 structures)
  Title: dbl homology domain from beta-pix
  Author: b. aghazadeh, k. zhu, t. j. kubiseski, g. a. liu, t. pawson, y. zheng, m. k. rosen
  Keywords: rho-gtpase exchange factor, transport protein
  
• 1qrq.pdb. metal transport 15-jun-99 1qrq
  Title: structure of a voltage-dependent k+ channel beta subunit
  Author: j. m. gulbis, s. mann, r. mackinnon
  Keywords: tim barrel, aldo-keto reductase, potassium channel subunit, voltage-dependent potassium channel, metal transport
  
• 1vsr.pdb. hydrolase 13-feb-99 1vsr Zn
  Title: very short patch repair (vsr) endonuclease from escherichia coli
  Author: s. e. tsutakawa, t. muto, h. jingami, n. kunishima, m. ariyoshi, d. kohda, m. nakagawa, k. morikawa
  Keywords: endonuclease, dna repair, mismatch recognition, hydrolase
  
• 7odc.pdb. lyase 03-mar-99 7odc
  Title: crystal structure ornithine decarboxylase from mouse, truncated 37 residues from the c-terminus, to 1.6 angstrom resolution
  Author: a. d. kern, m. a. oliveira, p. coffino, m. l. hackert
  Keywords: pyridoxal-5'-phosphate, plp, group iv decarboxylase, polyamines, parasitical, chemotherapy target, ornithine, putrescine, a/b-barrel, obligate, lyase
  
• 1kos.pdb. ribonucleic acid 03-may-99 1kos (NMR, 8 structures)
  Title: solution nmr structure of an analog of the yeast trna phe t stem loop containing ribothymidine at its naturally occurring position
  Author: k. m. koshlap, r. guenther, e. sochacka, a. malkiewicz, p. f. agris
  Keywords: trna, t stem loop, trna domain, rna hairpin, rna folding, ribonucleic acid
  
• 424d.pdb. deoxyribonucleic acid 14-sep-98 424d
  Title: 5'-d(*ap*cp*cp*gp*ap*cp*gp*tp*cp*gp*gp*t)-3'
  Author: h. rozenberg, d. rabinovich, f. frolow, r. s. hegde, z. shakked
  Keywords: double helix, deoxyribonucleic acid
  
• 425d.pdb. deoxyribonucleic acid 14-sep-98 425d
  Title: 5'-d(*ap*cp*cp*gp*gp*tp*ap*cp*cp*gp*gp*t)-3'
  Author: h. rozenberg, d. rabinovich, f. frolow, r. s. hegde, z. shakked
  Keywords: double helix, deoxyribonucleic acid
  
• 423d.pdb. deoxyribonucleic acid 14-sep-98 423d Mg
  Title: 5'-d(*ap*cp*cp*gp*ap*cp*gp*tp*cp*gp*gp*t)-3'
  Author: h. rozenberg, d. rabinovich, f. frolow, r. s. hegde, z. shakked
  Keywords: double helix, deoxyribonucleic acid
  
• 1d5d.pdb. hydrolase 07-oct-99 1d5d
  Title: the role of phenylalanine 8 in the stabilization of the s protein-s peptide interaction: packing and cavities
  Author: g. s. ratnaparkhi, r. varadarajan
  Keywords: rnase s mutant(f8m), cavity s protein, s peptide, hydrolase
  
• 1qe4.pdb. trasferase/dna 14-jul-99 1qe4 (theoretical model)
  Title: building a replisome from interacting pieces: sliding clamp complexed to a peptide from dna polymerase and a polymerase editing complex
  Author: y. shamoo, t. a. steitz
  Keywords: sliding clamp, gp45, replisome, accessory protein, polymerase, gp43, replication, trasferase/dna
  
• 1d5e.pdb. hydrolase 07-oct-99 1d5e
  Title: the role of phenylalanine 8 in the stabilization of the s protein-s peptide interaction: packing and cavities
  Author: ratnaparkhi g. s, varadarajan r.
  Keywords: rnase s mutant f8(norleucine), cavity s protein, s peptide, hydrolase
  
• 1qd5.pdb. membrane protein 09-jul-99 1qd5
  Title: outer membrane phospholipase a from escherichia coli
  Author: h. j. snijder, i. ubarretxena-belandia, m. blaauw, k. h. kalk, h. m. verheij, m. r. egmond, n. dekker, b. w. dijkstra
  Keywords: anti-parallel beta barrel, membrane phospholipase, membrane protein
  
• 1qq5.pdb. hydrolase 10-jun-99 1qq5
  Title: structure of l-2-haloacid dehalogenase from xanthobacter autotrophicus
  Author: i. s. ridder, h. j. rozeboom, k. h. kalk, b. w. dijkstra
  Keywords: l-2-haloacid dehalogenase, hydrolase
  
• 1qd6.pdb. membrane protein 09-jul-99 1qd6 Ca
  Title: outer membrane phospholipase a from escherichia coli
  Author: h. j. snijder, i. ubarretxena-belandia, m. blaauw, k. h. kalk, h. m. verheij, m. r. egmond, n dekker, b. w. dijkstra
  Keywords: anti-parallel beta barrel dimer, membrane protein
  
• 1qq6.pdb. hydrolase 11-jun-99 1qq6 Cl
  Title: structure of l-2-haloacid dehalogenase from xanthobacter autotrophicus with chloroacetic acid covalently bound
  Author: i. s. ridder, h. j. rozeboom, k. h. kalk, b. w. dijkstra
  Keywords: l-2 haloacid dehalogenase, hydrolase
  
• 1d7g.pdb. transcription factor/dna 18-oct-99 1d7g (theoretical model)
  Title: a model for the complex between the hypoxia-inducible factor-1 (hif-1) and its consensus dna sequence
  Author: g. michel, e. minet, f. durant, j. remacle, c. michiels
  Keywords: transcription factor, basic helix loop helix, complex (transcription factor/dna)
  
• 1d0g.pdb. apoptosis 09-sep-99 1d0g Cl Zn
  Title: crystal structure of death receptor 5 (dr5) bound to apo2l/trail
  Author: s. g. hymowitz, h. w. christinger, g. fuh, m. p. o'connell, r. f. kelley, a. ashkenazi, a. m. de vos
  Keywords: apoptosis, binding and specificity, ligand-receptor complex, tnf receptor family
  
• 1d2g.pdb. transferase 08-oct-99 1d2g
  Title: crystal structure of r175k mutant glycine n- methyltransferase from rat liver
  Author: y. huang, j. komoto, f. takusagawa, k. konishi, y. takata
  Keywords: methyltransferase
  
• 1by7.pdb. protein binding 27-oct-98 1by7
  Title: human plasminogen activator inhibitor-2. loop (66-98) deletion mutant
  Author: s. j. harrop, g. c. king, b. c. mabbutt, p. m. g. curmi
  Keywords: serpin, protein binding
  
• 1qq7.pdb. hydrolase 11-jun-99 1qq7 Cl
  Title: structure of l-2-haloacid dehalogenase from xanthobacter autotrophicus with chloropropionic acid covalently bound
  Author: i. s. ridder, h. j. rozeboom, k. h. kalk, b. w. dijkstra
  Keywords: l-2-haloacid dehalogenase, hydrolase
  
• 1d5h.pdb. hydrolase 07-oct-99 1d5h
  Title: rnase s(f8a). mutant ribonuclease s.
  Author: g. s ratnaparkhi, r. varadarajan
  Keywords: rnase s mutant f8a cavity s protein s peptide, hydrolase
  
• 1d7h.pdb. isomerase 18-oct-99 1d7h
  Title: fkbp complexed with dmso
  Author: p. burkhard, p. taylor, m. d. walkinshaw
  Keywords: isomerase, immunophilin, dmso, fkbp
  
• 1d2h.pdb. transferase 11-oct-99 1d2h
  Title: crystal structure of r175k mutant glycine n- methyltransferase complexed with s-adenosylhomocysteine
  Author: y. huang, j. komoto, f. takusagawa, k. konishi, y. takata
  Keywords: methyltransferase
  
• 1by8.pdb. hydrolase 27-oct-98 1by8
  Title: the crystal structure of human procathepsin k
  Author: j. m. lalonde, b. zhao, w. w. smith, c. a. janson, r. l. desjarlais, t. a. tomaszek, t. j. carr, s. k. thompson, d. s. yamashita, d. f. veber, s. s. abdel-mequid
  Keywords: hydrolase(sulfhydryl proteinase), papain
  
• 1d7i.pdb. isomerase 18-oct-99 1d7i
  Title: fkbp complexed with methyl methylsulfinylmethyl sulfide (dss)
  Author: p. burkhard, p. taylor, m. d. walkinshaw
  Keywords: isomerase, immunophilin, fkbp,methyl methylsulfinylmethyl sulfide, dss
  
• 1qgi.pdb. hydrolase 28-apr-99 1qgi
  Title: chitosanase from bacillus circulans
  Author: j. saito, a. kita, y. higuchi, y. nagata, a. ando, k. miki
  Keywords: hydrolase, chitosan degradation
  
• 1d7j.pdb. isomerase 18-oct-99 1d7j
  Title: fkbp complexed with 4-hydroxy-2-butanone
  Author: p. burkhard, p. taylor, m. d. walkinshaw
  Keywords: isomerase, immunophilin, fkbp, buq, 4-hydroxy-2-butanone
  
• 7pck.pdb. hydrolase 21-oct-98 7pck
  Title: crystal structure of wild type human procathepsin k
  Author: j. sivaraman, m. lalumiere, r. menard, m. cygler
  Keywords: hydrolase (thiol protease), procathepsin k, cysteine proteases, proregion
  
• 1d6o.pdb. isomerase 15-oct-99 1d6o
  Title: native fkbp
  Author: p. burkhard, p. taylor, m. d. walkinshaw
  Keywords: isomerase, immunophilin
  
• 1qko.pdb. photoreceptor 30-jul-99 1qko
  Title: high resolution x-ray structure of an early intermediate in the bacteriorhodopsin photocycle
  Author: k. edman, p. nollert, a. royant, h. belrhali, e. pebay-peyroula, j. hajdu, r. neutze, e. m. landau
  Keywords: photoreceptor, proton pump, membrane protein, retinal protein, intermediate state, photocycle, lipidic cubic phases