Recent PDB releases or updates: week of 13 October 1999

• 1bo0.pdb. chemotactic cytokine 10-aug-98 1bo0 (NMR, minimized average structure)
  Title: monocyte chemoattractant protein-3, nmr, minimized averagestructure
  Author: d. kwon, d. lee, b. d. sykes, k. -s. kim
  Keywords: chemotactic cytokine
  
• 1c4p.pdb. blood clotting 15-sep-99 1c4p
  Title: beta domain of streptokinase
  Author: x. wang, x. c. zhang
  Keywords: plasminogen activator, blood clotting
  
• 1qsp.pdb. signaling protein 22-jun-99 1qsp
  Title: crystal structure of the yeast phosphorelay protein ypd1
  Author: q. xu, a. h. west
  Keywords: four-helix bundle, histidine-containing phosphotransfer (hpt) domain, two-component signal transduction, signal transduction protein
  
• 1czq.pdb. viral protein/viral protein inhibitor 06-sep-99 1czq Cl
  Title: crystal structure of the d10-p1/iqn17 complex: a d-peptide inhibitor of hiv-1 entry bound to the gp41 coiled-coil pocket.
  Author: d. m. eckert, v. n. malashkevich, l. h. hong, p. a. carr, p. s kim
  Keywords: envelope glycoprotein, coiled coil, viral protein/viral protein inhibitor
  
• 1tc1.pdb. transferase 30-sep-98 1tc1
  Title: a 1.4 angstrom crystal structure for the hypoxanthine phosphoribosyltransferase of trypanosoma cruzi
  Author: p. j. focia, s. p. craig iii, r. nieves-alicea, r. j. fletterick, a. e. eakin
  Keywords: transferase,phosphoribosyltransferase, purine salvage, nucleotide metabolism
  
• 1qlq.pdb. serine protease inhibitor 10-sep-99 1qlq
  Title: bovine pancreatic trypsin inhibitor (bpti) mutant with altered binding loop sequence
  Author: h. czapinska, s. krzywda, g. m. sheldrick, j. otlewski, m. jaskolski
  Keywords: serine protease inhibitor
  
• 1igr.pdb. hormone receptor 28-sep-98 1igr
  Title: type 1 insulin-like growth factor receptor (domains 1-3)
  Author: t. p. j. garrett, n. m. mckern, m. lou, m. j. frenkel, j. d. bentley, g. o. lovrecz, t. c. elleman, l. j. cosgrove, c. w. ward
  Keywords: hormone receptor, insulin receptor family
  
• 1qub.pdb. membrane adhesion 01-jul-99 1qub
  Title: crystal structure of the glycosylated five-domain human beta2-glycoprotein i purified from blood plasma
  Author: b. bouma, ph. g. de groot, j. m. h. van den elsen, r. b. g. ravelli, a. schouten, m. j. a. simmelink, r. h. w. m. derksen, j. kroon, p. gros
  Keywords: short consensus repeat, sushi, complement control protein, n-glycosylation, multi-domain, membrane adhesion
  
• 6yas.pdb. lyase 15-mar-99 6yas
  Title: hydroxynitrile lyase from hevea brasiliensis, room temperature structure
  Author: j. zuegg, u. g. wagner, m. gugganig, c. kratky
  Keywords: oxynitrilase, cyanogenesis, cyanohydrin formation, lyase
  
• 7yas.pdb. lyase 15-mar-99 7yas
  Title: hydroxynitrile lyase, low temperature native structure
  Author: j. zuegg, u. g. wagner, m. gugganig, c. kratky, j. zuegg, u. g. wagner, m. gugganig, c. kratky
  Keywords: oxynitrilase, cyanogenesis, cyanhydrin formation, lyase, complex (lyase/peptide)
  
• 4yas.pdb. lyase 15-mar-99 4yas Cl
  Title: hydroxynitrile lyase complexed with chloralhydrate
  Author: j. zuegg, u. g. wagner, m. gugganig, c. kratky, j. zuegg, u. g. wagner, m. gugganig, c. kratky
  Keywords: oxynitrilase, cyanogenesis, cyanohydrin formation, lyase
  
• 5yas.pdb. lyase 15-mar-99 5yas F
  Title: hydroxynitrile lyase complexed with hexafluoroacetone
  Author: j. zuegg, u. g. wagner, m. gugganig, c. kratky, j. zuegg, u. g. wagner, m. gugganig, c. kratky
  Keywords: oxynitrilase, cyanogenesis, cyanohydrin formation, lyase
  
• 2yas.pdb. lyase 11-mar-99 2yas
  Title: hydroxynitrile lyase from hevea brasiliensis complexed with rhodanide
  Author: k. gruber, m. gugganig, c. kratky, k. gruber, m. gugganig, c. kratky
  Keywords: oxynitrilase, cyanogenesis, cyanhydrin formation, lyase
  
• 3yas.pdb. lyase 15-mar-99 3yas
  Title: hydroxynitrile lyase complexed with acetone
  Author: j. zuegg, u. g. wagner, m. gugganig, c. kratky
  Keywords: oxynitrilase, cyanogenesis, cyanohydrin formation, lyase
  
• 480d.pdb. ribonucleic acid 20-jul-99 480d
  Title: crystal structure of the sarcin/ricin domain from e. coli 23 s rrna
  Author: c. c. correll, i. g. wool, a. munishkin
  Keywords: sarcin/ricin loop or domain, rna recognition, ribosomes, elongation factors, crystal structure, ribonucleic acid
  
• 483d.pdb. ribonucleic acid 23-jul-99 483d
  Title: crystal structure of the sarcin/ricin domain from e. coli 23 s rrna
  Author: c. c. correll, i. g. wool, a. munishkin
  Keywords: sacin/ricin domain rna recognition ribosomes elongation factors crystal structure, ribonucleic acid
  
• 455d.pdb. deoxyribonucleic acid 04-mar-99 455d Mg
  Title: a6/a18 inter-strand dithiobis(propane)-crosslinked dodecamer (cgcgaattcgcg)2
  Author: t. k. chiu, m. kaczor-grzeskowiak, r. e. dickerson
  Keywords: inter-strand crosslinking, dodecamer cgcgaattcgcg/cgcgaattcgcg, deoxyribonucleic acid
  
• 463d.pdb. deoxyribonucleic acid 29-mar-99 463d Ca
  Title: calcium form of d(cgcgaattcgcg)2
  Author: j. liu, j. a. subirana
  Keywords: ca2+ binding, dickerson-drew dodecamer, deoxyribonucleic acid
  
• 1bx4.pdb. transferase 13-oct-98 1bx4 Cl Mg
  Title: structure of human adenosine kinase at 1.50 angstroms
  Author: i. i. mathews, m. d. erion, s. e. ealick
  Keywords: human adenosine kinase, transferase
  
• 1qj4.pdb. lyase 21-jun-99 1qj4
  Title: hydroxynitrile-lyase from hevea brasiliensis at atomic resolution
  Author: m. gugganig, k. gruber, c. kratky
  Keywords: oxynitrilase, cyanogenesis, cyanhydrin formation, lyase
  
• 1c95.pdb. deoxyribonucleic acid 31-jul-99 1c95 (NMR)
  Title: solution structure of the aminoacyl-capped oligodeoxyribonucleotide duplex trp-d(tgcgcac)2
  Author: w. c. ho, c. steinbeck, c. richert
  Keywords: double helix, aminoacyl-capped dna, deoxyribonucleic acid
  
• 2irf.pdb. gene regulation/dna 30-may-99 2irf I K
  Title: crystal structure of an irf-2/dna complex.
  Author: y. fujii, t. shimizu, m. kusumoto, y. kyogoku, t. taniguchi, t. hakoshima
  Keywords: transcription factor, ifn induction, irf family, gene regulation/dna
  
• 2tnf.pdb. cytokine 12-oct-98 2tnf
  Title: 1.4 a resolution structure of mouse tumor necrosis factor, towards modulation of its selctivity and trimerisation
  Author: k. j. baeyens, h. l. de bondt, a. raeymaekers, w. fiers, c. j. de ranter
  Keywords: lymphokine, cytokine, cytotoxin, transmembrane, glycoprotein, signal-anchor
  
• 1d3f.pdb. hydrolase 29-sep-99 1d3f Cl
  Title: n-terminal domain core methionine mutation
  Author: n. c. gassner, b. w. matthews
  Keywords: hydrolase (o-glycosyl), t4 lysozyme, methionine core mutant, protein engineering, protein folding
  
• 1b56.pdb. lipid-binding 12-jan-99 1b56
  Title: human recombinant epidermal fatty acid binding protein
  Author: h. van tilbeurgh, c. hohoff, t. borchers, f. spener
  Keywords: lipid-binding, fatty acid transport, beta barrel
  
• 1cwv.pdb. integrin-binding protein 26-aug-99 1cwv
  Title: crystal structure of invasin: a bacterial integrin-binding protein
  Author: p. j. bjorkman, z. a. hamburger
  Keywords: integrin-binding protein, inv gene
  
• 1c1f.pdb. galectin 03-mar-99 1c1f
  Title: ligand-free congerin i
  Author: t. shirai, c. mitsuyama, y. niwa, y. matsui, h. hotta, t. yamane, h. kamiya, c. ishii, t. ogawa, k. muramoto
  Keywords: galectin, lectin, beta-galactose-binding
  
• 2eug.pdb. hydrolase 13-oct-98 2eug
  Title: crystal structure of escherichia coli uracil dna glycosylase and its complexes with uracil and glycerol: structure and glycosylase mechanism revisited
  Author: g. xiao, m. tordova, j. jagadeesh, a. c. drohat, j. t. stivers, g. l. gilliland
  Keywords: glycosylase, hydrolase
  
• 3eug.pdb. hydrolase 13-oct-98 3eug
  Title: crystal structure of escherichia coli uracil dna glycosylase and its complexes with uracil and glycerol: structure and glycosylase mechanism revisited
  Author: g. xiao, m. tordova, j. jagadeesh, a. c. drohat, j. t. stivers, g. l. gilliland
  Keywords: glycosylase, hydrolase
  
• 1d2w.pdb. hydrolase 28-sep-99 1d2w Cl
  Title: n-terminal domain core methionine mutation
  Author: n. c. gassner, b. w. matthews
  Keywords: hydrolase (o-glycosyl), t4 lysozyme, methionine core mutant, protein engineering, protein folding
  
• 1eug.pdb. hydrolase 12-oct-98 1eug
  Title: crystal structure of escherichia coli uracil dna glycosylase and its complexes with uracil and glycerol: structure and glycosylase mechanism revisited
  Author: g. xiao, m. tordova, j. jagadeesh, a. c. drohat, j. t. stivers, g. l. gilliland
  Keywords: glycosylase, hydrolase
  
• 1b7g.pdb. oxidoreductase 22-jan-99 1b7g
  Title: glyceraldehyde 3-phosphate dehydrogenase
  Author: m. n. isupov, j. a. littlechild
  Keywords: archaea; hyperthermophile; gapdh; hyperthermophilic dehydrogenase, oxidoreductase
  
• 1yag.pdb. contractile protein 09-oct-98 1yag Mg Ca
  Title: structure of the yeast actin-human gelsolin segment 1 complex
  Author: s. m. vorobiev, b. strokopytov, c. frieden, s. c. almo
  Keywords: complex, actin, gelsolin, contractile protein
  
• 1sgg.pdb. tyrosine-protein kinase 08-jan-99 1sgg (NMR, 10 structures)
  Title: the solution structure of sam domain from the receptor tyrosine kinase ephb2, nmr, 10 structures
  Author: m. smalla, p. schmieder, m. kelly, a. ter laak, g. krause, l. ball, m. wahl, p. bork, h. oschkinat
  Keywords: nmr, receptor oligomerization, eph receptors, tyrosine phosphorylation, signal transduction, tyrosine-protein kinase
  
• 3hdh.pdb. oxidoreductase 13-apr-99 3hdh
  Title: pig heart short chain l-3-hydroxyacyl coa dehydrogenase revisited: sequence analysis and crystal structure determination
  Author: j. j. barycki, l. k. o'brien, j. j. birktoft, a. w. strauss, l. j. banaszak
  Keywords: oxidoreductase, beta oxidation, schad, catalytic activity: l-3-hydroxyacyl-coa + nad(+) = 3-oxoacyl-coa + nadh
  
• 1qj8.pdb. integral membrane protein 23-jun-99 1qj8 Cl Pt
  Title: crystal structure of the outer membrane protein ompx from escherichia coli
  Author: j. vogt, g. e. schulz
  Keywords: integral membrane protein, beta-barrel, bacterial defense system, platinum complex structure
  
• 1qex.pdb. virus/viral protein 30-mar-99 1qex
  Title: bacteriophage t4 gene product 9 (gp9), the trigger of tail contraction and the long tail fibers connector
  Author: v. a. kostyuchenko, g. a. navruzbekov, l. p. kurochkina, s. v. strelkov, v. v. mesyanzhinov, m. g. rossmann
  Keywords: bacteriophage t4, baseplate, gene product 9, oligomerization, x-ray crystallography, virus/viral protein
  
• 1d2y.pdb. hydrolase 28-sep-99 1d2y Cl
  Title: n-terminal domain core methionine mutation
  Author: n. c. gassner, b. w. matthews
  Keywords: hydrolase (o-glycosyl), t4 lysozyme, methionine core mutant, protein engineering, protein folding
  
• 1qj9.pdb. integral membrane protein 23-jun-99 1qj9
  Title: crystal structure of the outer membrane protein ompx from escherichia coli
  Author: j. vogt, g. e. schulz
  Keywords: integral membrane protein, beta barrel, bacterial defense system
  
• 1qk9.pdb. methyl-cpg-binding protein 12-jul-99 1qk9 (NMR, 28 structures)
  Title: the solution structure of the domain from mecp2 that binds to methylated dna
  Author: r. i. d. wakefield, b. o. smith, x. nan, a. free, a. soteriou, d. uhrin, a. bird, p. n. barlow
  Keywords: nmr, solution structure, methylated dna, methyl cytosine, mbd
  
• 1d3j.pdb. hydrolase 29-sep-99 1d3j Cl
  Title: n-terminal domain core methionine mutation
  Author: n. c. gassner, b. w. matthews
  Keywords: hydrolase (o-glycosyl), t4 lysozyme, methionine core mutant, protein engineering, protein folding
  
• 1cxz.pdb. signaling protein 31-aug-99 1cxz Mg
  Title: crystal structure of human rhoa complexed with the effector domain of the protein kinase pkn/prk1
  Author: r. maesaki, k. ihara, t. shimizu, s. kuroda, k. kaibuchi, t. hakoshima
  Keywords: protein-protein complex, antiparallel coiled-coil, signaling protein
  
• 1nuk.pdb. transferase 13-oct-98 1nuk
  Title: crystal structure of the ligand-binding domain of the ephb2 receptor tyrosine kinase
  Author: j. -p. himanen, m. henkemeyer, d. b. nikolov
  Keywords: transferase, eph receptor tyrosine kinase,
  
• 1b8l.pdb. calcium binding protein 01-feb-99 1b8l Ca
  Title: calcium-bound d51a/e101d/f102w triple mutant of beta carp parvalbumin
  Author: m. s. cates, m. b. berry, e. ho, q. li, j. d. potter, g. n. phillips
  Keywords: calcium binding protein, ef-hand proteins, parvalbumin, calcium-binding
  
• 1c1l.pdb. galectin 03-mar-99 1c1l
  Title: lactose-liganded congerin i
  Author: t. shirai, c. mitsuyama, y. niwa, y. matsui, h. hotta, t. yamane, h. kamiya, c. ishii, t. ogawa, k. muramoto
  Keywords: galectin, lectin, beta-galactose-binding
  
• 1d3o.pdb. hydrolase/hydrolase inhibitor 30-sep-99 1d3o (theoretical model)
  Title: knowledge based model of a serine protease inhibitor of cucurbitaceae family (theoretical model) bound to trypsin
  Author: a. banerjee, s. chakraborty, s. bhattacharyya
  Keywords: serine protease inhibitor, trypsin inhibitor complex, hydrolase/hydrolase inhibitor
  
• 1qmo.pdb. lectin 04-oct-99 1qmo Mn Ca
  Title: structure of fril, a legume lectin that delays hematopoietic progenitor maturation
  Author: t. w. hamelryck, j. g. moore, m. chrispeels, r. loris, l. wyns
  Keywords: lectin, crosslink, hematopoietic progenitor, sugar complex