Recent PDB releases or updates: week of 6 October 1999

• 1qlp.pdb. serine protease inhibitor 10-sep-99 1qlp
  Title: 2.0 angstrom structure of intact alpha-1-antitrypsin: a canonical template for active serpins
  Author: p. r. elliott, x. y. pei, t. dafforn, r. j. read, r. w. carrell, d. a. lomas
  Keywords: serine protease inhibitor, serpin, glycoprotein, signal, polymorphism, emphysema, disease mutation, acute phase
  
• 3bta.pdb. toxin 12-aug-98 3bta Zn
  Title: crystal structure of botulinum neurotoxin serotype a
  Author: r. c. stevens, d. b. lacy
  Keywords: neurotoxin, zinc protease, sugar binding protein, translocation
  
• 1d1r.pdb. structural genomics 20-sep-99 1d1r (NMR, 20 structures)
  Title: nmr solution structure of the product of the e. coli ycih gene.
  Author: j. r. cort, e. v. koonin, p. a. bash, m. a. kennedy
  Keywords: alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold
  
• 1eer.pdb. complex (cytokine/receptor) 24-jul-98 1eer
  Title: crystal structure of human erythropoietin complexed to its receptor at 1.9 angstroms
  Author: r. s. syed, c. li
  Keywords: erythropoietin, erythropoietin receptor, signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor)
  
• 1qfb.pdb. toxin 08-apr-99 1qfb (NMR, 20 structures)
  Title: the cyclic peptide contryphan-r from conus radiatus
  Author: p. k. pallaghy, a. p. melnikova, e. c. jimenez, b. m. olivera, r. s. norton
  Keywords: cyclic peptide, disulfide bridge, d-configuration, conus peptide, stiff-tail syndrome, venom duct peptide, toxin
  
• 1d2c.pdb. transferase 23-sep-99 1d2c
  Title: methyltransferase
  Author: y. huang, f. takusagawa
  Keywords: methyltransferase
  
• 1qs3.pdb. toxin 25-jun-99 1qs3 (NMR)
  Title: nmr solution conformation of an antitoxic analog of alpha- conotoxin gi
  Author: k. h. mok, k. -h. han
  Keywords: conotoxin, antitoxic analog, nicotinic acetylcholine receptor
  
• 486d.pdb. ribosome 09-sep-99 486d Ir
  Title: x-ray crystal structures of 70s ribosome functional complexes
  Author: j. h. cate, m. m. yusupov, g. zh. yusupova, t. n. earnest, h. f. noller
  Keywords: functional models of 70s ribosome, trna
  
• 1bxd.pdb. transferase 02-oct-98 1bxd (NMR, 20 structures)
  Title: nmr structure of the histidine kinase domain of the e. coli osmosensor envz
  Author: t. tanaka, s. k. saha, c. tomomori, r. ishima, d. liu, k. i. tong, h. park, r. dutta, l. qin, m. b. swindells, t. yamazaki, a. m. ono, m. kainosho, m. inouye, m. ikura
  Keywords: histidine kinase, osmosensor, his-asp phosphorelay system, signal transduction
  
• 1cqd.pdb. hydrolase 15-jun-99 1cqd
  Title: the 2.1 angstrom structure of a cysteine protease with proline specificity from ginger rhizome, zingiber officinale
  Author: k. h. choi, r. a. laursen, k. n. allen
  Keywords: cysteine protease, glycoprotein, proline specificity, carbohydrate, papain family, hydrolase
  
• 1d2e.pdb. rna binding protein 23-sep-99 1d2e Mg
  Title: crystal structure of mitochondrial ef-tu in complex with gdp
  Author: g. r. andersen, s. thirup, l. l. spremulli, j. nyborg
  Keywords: g-protein, beta-barrel, rna binding protein
  
• 1c05.pdb. ribosome 14-jul-99 1c05 (NMR, minimized average structure)
  Title: solution structure of ribosomal protein s4 delta 41, refined with dipolar couplings (minimized average structure)
  Author: m. a. markus, r. b. gerstner, d. e. draper, d. a. torchia
  Keywords: two subdomains, unique topology, possible helix-turn-helix motif
  
• 1c0e.pdb. hydrolase 15-jul-99 1c0e
  Title: active site s19a mutant of bovine heart phosphotyrosyl phosphatase
  Author: l. tabernero, b. n. evans, p. a. tishmack, r. l. van etten, c. v. stauffacher
  Keywords: tyrosine phosphatase, phosphatase dimer, hydrolase
  
• 1ute.pdb. hydrolase 18-jan-99 1ute Fe
  Title: pig purple acid phosphatase complexed with phosphate
  Author: l. w. guddat, a. mcalpine, d. hume, s. hamilton, j. de jersey, j. l. martin
  Keywords: purple acid phosphatase, tartrate resistant acid phosphatase, metalloenzyme, uteroferrin, hydrolase
  
• 1qhu.pdb. binding protein 27-may-99 1qhu Cl Na Fe
  Title: mammalian blood serum haemopexin deglycosylated and in complex with its ligand haem
  Author: m. paoli, h. m. baker, w. t. morgan, a. smith, e. n. baker
  Keywords: beta propeller, haem binding and transport, iron metabolism, binding protein
  
• 1qhv.pdb. virus/viral protein 28-may-99 1qhv
  Title: human adenovirus serotype 2 fibre head
  Author: m. j. van raaij, n. louis, j. chroboczek, s. cusack
  Keywords: receptor binding, extra-ordinary stability, virus/viral protein
  
• 2pah.pdb. hydroxylase 26-may-98 2pah Fe
  Title: tetrameric human phenylalanine hydroxylase
  Author: r. c. stevens, f. fusetti, h. erlandsen
  Keywords: hydroxylase, phenylketonuria
  
• 1oth.pdb. transferase 06-oct-98 1oth
  Title: crystal structure of human ornithine transcarbamoylase complexed with n-phosphonacetyl-l-ornithine
  Author: d. shi, h. morizono, y. ha, m. aoyagi, n. tuchman, n. m. allewell
  Keywords: transcarbamoylase, transferase
  
• 1c4x.pdb. hydrolase 30-sep-99 1c4x
  Title: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (bphd) from rhodococcus sp. strain rha1
  Author: n. nandhagopal, t. senda, y. mitsui
  Keywords: hydrolase, pcb degradation
  
• 1bxi.pdb. immune system 04-oct-98 1bxi Ni Se
  Title: crystal structure of the escherichia coli colicin e9 dnase domain with its cognate immunity protein im9
  Author: u. c. kuhlmann, c. kleanthous, r. james, g. r. moore, a. m. hemmings
  Keywords: colicins, endonuclease, protein-protein interaction
  
• 1cli.pdb. synthetase 28-apr-99 1cli
  Title: x-ray crystal structure of aminoimidazole ribonucleotide synthetase (purm), from the e. coli purine biosynthetic pathway, at 2.5 a resolution
  Author: c. li, t. j. kappock, j. stubbe, t. m. weaver, s. e. ealick
  Keywords: air synthetase, purm, purine biosynthesis, trifunctional enzyme, purl, fgar amidotransferase, novel fold
  
• 1coz.pdb. transferase 29-may-99 1coz
  Title: ctp:glycerol-3-phosphate cytidylyltransferase from bacillus subtilis
  Author: c. h. weber, y. s. park, s. sanker, c. kent, m. l. ludwig
  Keywords: transferase
  
• 1cij.pdb. hydrolase 31-mar-99 1cij Br
  Title: haloalkane dehalogenase soaked with high concentration of bromide
  Author: i. s. ridder, h. j. rozeboom, k. h. kalk, b. w. dijkstra
  Keywords: dehalogenase, collision complex, alpha/beta-hydrolase
  
• 1cvj.pdb. gene regulation/rna 23-aug-99 1cvj
  Title: x-ray crystal structure of the poly(a)-binding protein in complex with polyadenylate rna
  Author: r. c. deo, j. b. bonanno, n. sonenberg, s. k. burley
  Keywords: rrm, protein-rna complex, gene regulation/rna
  
• 1c9j.pdb. hydrolase 02-aug-99 1c9j Ca
  Title: bacillus lentus subtilisin k27r/n87s/v104y/n123s/t274a variant
  Author: r. bott
  Keywords: subtilisin, hydrolase, altered flexibility
  
• 1d1l.pdb. virus/viral protein 17-sep-99 1d1l
  Title: crystal structure of cro-f58w mutant
  Author: p. b. rupert, a. k. m. m. mollah, m. c. mossing, b. w. matthews
  Keywords: helix-turn-helix, virus/viral protein
  
• 3phm.pdb. oxidoreductase 25-may-99 3phm Cu Ni
  Title: reduced (cu+) peptidylglycine alpha-hydroxylating monooxygenase (phm)
  Author: s. t. prigge, l. m. amzel
  Keywords: monooxygenase, bioactive peptide activation, copper, ascorbate, oxidoreductase
  
• 1opm.pdb. oxidoreductase 25-may-99 1opm Cu I Ni
  Title: oxidized (cu2+) peptidylglycine alpha-hydroxylating monooxygenase (phm) with bound substrate
  Author: s. t. prigge, l. m. amzel
  Keywords: monooxygenase, bioactive peptide activation, copper, ascorbate, oxidoreductase
  
• 1d3m.pdb. hydrolase 29-sep-99 1d3m Cl
  Title: methionine core mutation
  Author: n. c. gassner, b. w. matthews
  Keywords: hydrolase (o-glycosyl), t4 lysozyme, methionine core mutant, protein engineering, protein folding
  
• 1c9m.pdb. hydrolase 02-aug-99 1c9m Ca
  Title: bacillus lentus subtilsin (ser 87) n76d/s103a/v104i
  Author: r. bott
  Keywords: serine protease, subtilisin, site-specific variant, altered flexibility, hydrolase
  
• 1d3n.pdb. hydrolase 29-sep-99 1d3n Cl Se
  Title: methionine core mutation
  Author: n. c. gassner, b. w. matthews
  Keywords: hydrolase (o-glycosyl), t4 lysozyme, methionine core mutant, selenomethionine, protein engineering, protein folding
  
• 1bxn.pdb. lyase 06-oct-98 1bxn
  Title: the crystal structure of rubisco from alcaligenes eutrophus to 2.7 angstroms.
  Author: s. hansen, v. b. vollan, e. hough, k. andersen
  Keywords: lyase (carbon-carbon)
  
• 1cun.pdb. structural protein 20-aug-99 1cun
  Title: crystal structure of repeats 16 and 17 of chicken brain alpha spectrin
  Author: v. l. grum, d. li, r. i. macdonald, a. mondragon
  Keywords: two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled-coils, structural protein
  
• 1c9n.pdb. hydrolase 02-aug-99 1c9n Ca
  Title: bacillus lentus substilisin variant (ser 87) k27r/v104y/n123s/t274a
  Author: r. bott
  Keywords: subtiliin, altered flexibility, hydrolase, site-specific variant