Recent PDB releases or updates: week of 22 September 1999

• 2nap.pdb. oxidoreductase 18-sep-98 2nap Mo Fe
  Title: dissimilatory nitrate reductase (nap) from desulfovibrio desulfuricans
  Author: j. m. dias, m. than, a. humm, r. huber, g. bourenkov, h. bartunik, s. bursakov, j. calvete, j. caldeira, c. carneiro, j. moura, i. moura, m. j. romao
  Keywords: nitrogenous acceptor, dissimilatory nitrate reductase, crystal structure, multiwavelength anomalous diffraction, molybdopterin cofactor, [4fe-4s] cluster, oxidoreductase
  
• 2bmp.pdb. cytokine 18-sep-98 2bmp
  Title: human bone morphogenetic protein-2 (bmp-2)
  Author: c. scheufler, w. sebald, m. huelsmeyer
  Keywords: bone morphogenetic protein, cystine-knot, tgfb-family, cytokine
  
• 1c3p.pdb. lyase 28-jul-99 1c3p
  Title: crystal structure of an hdac homolog from aquifex aeolicus
  Author: m. s. finnin, j. r. donigian, n. p. pavletich
  Keywords: alpha/beta fold, lyase
  
• 1qk0.pdb. hydrolase (o-glycosyl) 08-jul-99 1qk0 Co I
  Title: cel6a in complex with m-iodobenzyl beta-d-glucopyranosyl- beta(1,4)-d-xylopyranoside
  Author: j. -y. zou, t. a. jones
  Keywords: hydrolase (o-glycosyl), glycosidase, glycoprotein
  
• 1cqq.pdb. hydrolase 10-aug-99 1cqq F
  Title: type 2 rhinovirus 3c protease with ag7088 inhibitor
  Author: d. matthews, r. a. ferre
  Keywords: viral protein, hydrolase
  
• 1qja.pdb. complex (signal transduction/peptide) 23-jun-99 1qja
  Title: 14-3-3 zeta/phosphopeptide complex (mode 2)
  Author: k. rittinger, j. budman, j. xu, s. volinia, l. c. cantley, s. j. smerdon, s. j. gamblin, m. b. yaffe
  Keywords: complex, 14-3-3, phosphopeptide, signal transduction
  
• 1qda.pdb. deoxyribonucleic acid 17-may-99 1qda
  Title: crystal structure of epidoxorubicin-formaldehyde virtual crosslink of dna
  Author: e. r. podell, d. j. harrington, d. j. taatjes, t. h. koch
  Keywords: double helix, drug-dna complex, deoxyribonucleic acid
  
• 1bvr.pdb. oxidoreductase 17-sep-98 1bvr
  Title: m.tb. enoyl-acp reductase (inha) in complex with nad+ and c16-fatty-acyl-substrate
  Author: d. rozwarski, c. vilcheze, m. sugantino, r. bittman, w. jacobs
  Keywords: nadh-dependent enoyl-acp reductase, oxidoreductase
  
• 1c3r.pdb. lyase 28-jul-99 1c3r Zn
  Title: crystal structure of an hdac homolog complexed with trichostatin a
  Author: m. s. finnin, j. r. donigian, n. p. pavletich
  Keywords: alpha/beta fold, hydroxamic acid, charge-relay system, penta-coordinated zinc, lyase
  
• 1qjb.pdb. complex (signal transduction/peptide) 23-jun-99 1qjb
  Title: 14-3-3 zeta/phosphopeptide complex (mode 1)
  Author: k. rittinger, j. budman, j. xu, s. volinia, l. c. cantley, s. j. smerdon, s. j. gamblin, m. b. yaffe
  Keywords: complex (peptide), 14-3-3, phosphopeptide, signal transduction
  
• 1qk2.pdb. hydrolase (o-glycosyl) 09-jul-99 1qk2
  Title: wild type cel6a with a non-hydrolysable cellotetraose
  Author: j. -y. zou, t. a. jones
  Keywords: hydrolase (o-glycosyl), glycosidase, glycoprotein
  
• 1c3s.pdb. lyase 28-jul-99 1c3s Zn
  Title: crystal structure of an hdac homolog complexed with saha
  Author: m. s. finnin, j. r. donigian, n. p. pavletich
  Keywords: alpha/beta fold, hydroxamic acid, penta-coordinated zinc, charge-relay system, lyase
  
• 1qus.pdb. hydrolase 03-jul-99 1qus Na
  Title: 1.7 a resolution structure of the soluble lytic transglycosylase slt35 from escherichia coli
  Author: e. j. van asselt, a. j. dijkstra, k. h. kalk, b. takacs, w. keck, b. w. dijkstra
  Keywords: alpha-helical protein with an five-stranded antiparallel beta-sheet, hydrolase
  
• 482d.pdb. deoxyribonucleic acid 27-jul-99 482d
  Title: release of the cyano moiety in the crystal structure of n- cyanomethyl-n-(2-methoxyethyl)-daunomycin complexed with d(cgatcg)
  Author: p. saminadin, a. dautant, m. mondon, b. langlois d'estaintot, c. courseille, g. precigoux
  Keywords: right handed dna, double helix, complexed with drug, deoxyribonucleic acid
  
• 431d.pdb. deoxyribonucleic acid 09-oct-98 431d Mg
  Title: 5'-d(*gp*gp*cp*cp*ap*ap*tp*tp*gp*g)-3'
  Author: d. vlieghe, j. p. turkenburg, l. van meervelt
  Keywords: deoxyribonucleic acid, extended hydration spine, triplet formation, atomic resolution, double backbone conformation
  
• 1mud.pdb. hydrolase 20-aug-98 1mud Fe
  Title: catalytic domain of muty from escherichia coli, d138n mutant complexed to adenine
  Author: y. guan, j. a. tainer
  Keywords: dna repair, dna g.a mismatch repair enzyme, hydrolase
  
• 1nst.pdb. sulfotransferase 07-sep-98 1nst
  Title: the sulfotransferase domain of human haparin sulfate n-deacetylase/n-sulfotransferase
  Author: y. kakuta, l. c. pedersen, m. negishi
  Keywords: sulfotransferase, pap, haparin sulfate, haparin sulfate biosynthesis, glycoprotein
  
• 1cjd.pdb. virus/viral protein 12-apr-99 1cjd
  Title: the bacteriophage prd1 coat protein, p3, is structurally similar to human adenovirus hexon
  Author: s. d. benson, j. k. h. bamford, d. h. bamford, r. m. burnett
  Keywords: bacteriophage prd1, coat protein, jelly roll, virus/viral protein
  
• 1qut.pdb. hydrolase 03-jul-99 1qut Na
  Title: the soluble lytic transglycosylase slt35 from escherichia coli in complex with n-acetylglucosamine
  Author: e. j. van asselt, a. j. dijkstra, k. h. kalk, b. takacs, w. keck, b. w. dijkstra
  Keywords: alpha-helical protein with a five-stranded antiparallel beta-strand, hydrolase
  
• 1bvu.pdb. oxidoreductase 20-jul-99 1bvu
  Title: glutamate dehydrogenase from thermococcus litoralis
  Author: p. j. baker, k. l. britton, k. s. -p. yip, t. j. stillman, d. w. rice
  Keywords: null, oxidoreductase
  
• 1b9u.pdb. hydrolase 15-feb-99 1b9u (NMR)
  Title: membrane domain of the subunit b of the e.coli atp synthase
  Author: o. dmitriev, p. c. jones, w. jiang, r. h. fillingame
  Keywords: atp synthase, membrane protein, hydrolase
  
• 1cke.pdb. transferase 24-sep-98 1cke
  Title: cmp kinase from escherichia coli free enzyme structure
  Author: p. briozzo, b. golinelli-pimpaneau
  Keywords: nucleotide monophosphate kinase,, transferase
  
• 1cx5.pdb. dna/rna 28-aug-99 1cx5 Co (NMR)
  Title: antisense dna/rna hybrid containing modified backbone
  Author: x. yang, x. han, c. cross, y. sanghvi, x. gao
  Keywords: antisense, dna/rna hybrid, nmr, modified backbone linker
  
• 1c15.pdb. apoptosis 20-jul-99 1c15 (NMR, 16 structures)
  Title: solution structure of apaf-1 card
  Author: p. zhou, j. chou, r. sanchez-olea, j. yuan, g. wagner
  Keywords: programmed cell death, apaf, card, ded, dd, caspase recruitment domain, homophilic interaction, apoptosis
  
• 1bvw.pdb. hydrolase 19-sep-98 1bvw Mg
  Title: cellobiohydrolase ii (cel6a) from humicola insolens
  Author: a. varrot, g. j. davies, m. schulein
  Keywords: cellulose degradation, cellobiohydrolase, cellulase, glycoside hydrolase family 6
  
• 1www.pdb. nerve growth factor/trka complex 12-mar-99 1www
  Title: ngf in complex with domain 5 of the trka receptor
  Author: c. wiesmann, m. h. ultsch, a. m. de vos
  Keywords: complex, trka receptor, nerve growth factor, cysteine knot, immunoglobulin like domain, nerve growth factor/trka complex
  
• 1qjw.pdb. hydrolase (o-glycosyl) 06-jul-99 1qjw Cd
  Title: cel6a (y169f) with a non-hydrolysable cellotetraose
  Author: j. -y. zou, t. a. jones
  Keywords: hydrolase (o-glycosyl), glycosidase, glycoprotein
  
• 1qcg.pdb. antiviral protein 04-may-99 1qcg
  Title: low temperature structure of pokeweed antiviral protein
  Author: i. v. kurinov, d. e. myers, j. d. irvin, f. m. uckun
  Keywords: pokeweed antiviral protein, ribosome inactivating protein, rna substrate analogs
  
• 1tax.pdb. hydrolase 15-sep-98 1tax
  Title: thermostable xylanase i from thermoascus aurantiacus
  Author: l. lo leggio, r. w. pickersgill
  Keywords: xylanase, family 10, plant cell wall degradation, hydrolase
  
• 7cei.pdb. immune system 17-sep-98 7cei Zn
  Title: the endonuclease domain of colicin e7 in complex with its inhibitor im7 protein
  Author: t. p. ko, c. c. liao, w. y. ku, k. f. chak, h. s. yuan
  Keywords: dnase, e-group colicins, protein-protein interaction, protein recognition, immune system
  
• 1qci.pdb. antiviral protein 05-may-99 1qci
  Title: low temperature structure of pokeweed antiviral protein complexed with adenine
  Author: i. v. kurinov, d. e. myers, j. d. irvin, f. m. uckun
  Keywords: pokeweed antiviral protein, ribosome inactivating protein, rna substrate analogs
  
• 1cyz.pdb. deoxyribonucleic acid 31-aug-99 1cyz (NMR)
  Title: nmr structure of the gaactggttc/tri-imidazole polyamide complex
  Author: x. -l. yang, r. b. hubbard iv, m. lee, z. -f. tao, h. sugiyama, a. h. - j. wang
  Keywords: t:g recognized by im/im pair in the dna minor groove, deoxyribonucleic acid
  
• 1qcj.pdb. antiviral protein 05-may-99 1qcj
  Title: low temperature complex of pokeweed antiviral protein with pteoric acid
  Author: i. v. kurinov, d. e. myers, j. d. irvin, f. m. uckun
  Keywords: pokeweed antiviral protein, ribosome inactivating protein, rna substrate analogs, pteoric acid
  
• 2cmk.pdb. transferase 19-sep-98 2cmk
  Title: cytidine monophosphate kinase in complex with cytidine-di- phosphate
  Author: b. golinelli-pimpaneau, p. briozzo
  Keywords: nucleotide monophosphate kinase, transferase
  
• 1sml.pdb. hydrolase 22-sep-98 1sml Zn
  Title: metallo beta lactamase l1 from stenotrophomonas maltophilia
  Author: j. h. ullah, t. r. walsh, i. a. taylor, d. c. emery, c. s. verma, s. j. gamblin, j. spencer
  Keywords: metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase
  
• 1bvm.pdb. hydrolase 14-sep-98 1bvm (NMR, 20 structures)
  Title: solution nmr structure of bovine pancreatic phospholipase a2, 20 structures
  Author: c. -h. yuan, i. -j. l. byeon, y. li, m. -d. tsai
  Keywords: phospholipase a2, hydrolase
  
• 1qqm.pdb. hydrolase 07-jun-99 1qqm Cl Mg K
  Title: d199s mutant of bovine 70 kilodalton heat shock protein
  Author: e. r. johnson, d. b. mckay
  Keywords: hydrolase (acting on acid anhydrides), molecular chaperone, atpase
  
• 1d0n.pdb. contractile protein 13-sep-99 1d0n
  Title: the crystal structure of calcium-free equine plasma gelsolin.
  Author: l. d. burtnick, r. robinson, c. li
  Keywords: mixed alpha-beta structure, actin-binding protein, protein domain packing, contractile protein
  
• 1qqn.pdb. hydrolase 07-jun-99 1qqn Cl Mg K
  Title: d206s mutant of bovine 70 kilodalton heat shock protein
  Author: e. r. johnson, d. b. mckay
  Keywords: hydrolase (acting on acid anhydrides), molecular chaperone, atpase
  
• 1qqo.pdb. hydrolase 07-jun-99 1qqo Cl Mg K
  Title: e175s mutant of bovine 70 kilodalton heat shock protein
  Author: e. r. johnson, d. b. mckay
  Keywords: hydrolase (acting on acid anhydrides), molecular chaperone, atpase