Recent PDB releases or updates: week of 25 August 1999

• 1qs0.pdb. oxidoreductase 24-jun-99 1qs0 Mg Se
  Title: crystal structure of pseudomonas putida 2-oxoisovalerate dehydrogenase (branched-chain alpha-keto acid dehydrogenase, e1b)
  Author: a. aevarsson, k. seger, s. turley, j. r. sokatch, w. g. j. hol
  Keywords: heterotetramer, thdp cofactor, oxidoreductase
  
• 2qr2.pdb. oxidoreductase 19-apr-99 2qr2 Zn
  Title: human quinone reductase type 2, complex with menadione
  Author: c. foster, m. a. bianchet, p. talalay, l. m. amzel
  Keywords: quinone-reductase (cytosolic), oxidoreductase, flavoprotein, metalloenzyme
  
• 3gsb.pdb. isomerase 26-jun-98 3gsb
  Title: crystal structure of glutamate-1-semialdehyde aminomutase in complex with gabaculine
  Author: m. hennig, j. n. jansonius
  Keywords: chlorophyll biosynthesis, pyridoxal-5'-phosphate, pyridoxamine-5'-phosphate, asymmetric dimer, gabaculine, isomerase
  
• 3vhb.pdb. oxygen storage/transport 17-mar-99 3vhb Fe
  Title: imidazole adduct of the bacterial hemoglobin from vitreoscilla sp.
  Author: m. bolognesi, a. boffi, m. coletta, a. mozzarelli, a. pesce, c. tarricone, p. ascenzi
  Keywords: hemoprotein, oxygen transport, oxygen storage/transport
  
• 1a6b.pdb. complex (nucleocapsid protein/dna) 23-feb-98 1a6b Zn (NMR, 20 structures)
  Title: nmr structure of the complex between the zinc finger protein ncp10 of moloney murine leukemia virus and a sequence of the psi-packaging domain of hiv-1, 20 structures
  Author: w. schueler, c. -z. dong, m. -c. fournie-zaluski, b. p. roques
  Keywords: nucleocapsid protein, intercalation, nucleic acid, retrovirus, zinc finger
  
• 1cq2.pdb. oxygen storage/transport 04-aug-99 1cq2 Fe (single-crystal neutron diffraction)
  Title: neutron struture of fully deuterated sperm whale myoglobin at 2.0 angstrom
  Author: f. shu, v. ramakrishnan, b. p. schoenborn
  Keywords: helical, globular, all-hydrogen containing structure, oxygen storage/transport
  
• 1c42.pdb. immune system 03-aug-99 1c42 (theoretical model)
  Title: sequence alignment study and model building by homology of hfe
  Author: f. -y. dupradeau, b. altenberg
  Keywords: alignments, hemochromatosis, hfe, homology modeling, immune system
  
• 1c4b.pdb. beta-hairpin 02-aug-99 1c4b (NMR)
  Title: a beta-hairpin mimic from fceri-alpha-cyclo(rd-262)
  Author: j. m. mcdonnell, d. fushman, s. m. cahill, b. j. sutton, d. cowburn
  Keywords: beta-hairpin, peptide mimic, d-amino acids, allergy, fceri, ige
  
• 1c32.pdb. deoxyribonucleic acid 24-jul-99 1c32 (NMR)
  Title: solution structure of a quadruplex forming dna and its intermidiate
  Author: p. h. bolton, v. m. marathias, k. wang
  Keywords: aptamer, quadruplex, dna, metal binding dna, potassium, thrombin, deoxyribonucleic acid
  
• 1qr2.pdb. oxidoreductase 15-apr-99 1qr2 Zn
  Title: human quinone reductase type 2
  Author: c. foster, m. a. bianchet, p. talalay, l. m. amzel
  Keywords: quinone-reductase (cytosolic), oxidoreductase, flavoprotein, metalloenzyme
  
• 1ay3.pdb. toxin 14-nov-97 1ay3 (NMR, 27 structures)
  Title: nodularin from nodularia spumigena
  Author: a. j. annila
  Keywords: hepatotoxin, inhibitor of ser/thr-specific protein phosphatases
  
• 1c43.pdb. hydrolase 03-aug-99 1c43 Na
  Title: mutant human lysozyme with foreign n-terminal residues
  Author: k. takano, k. tsuchimori, y. yamagata, k. yutani
  Keywords: n-terminal, stability, hydrolase
  
• 1qks.pdb. oxidoreductase 04-aug-99 1qks Fe
  Title: cytochrome cd1 nitrite reductase, oxidised form
  Author: v. fulop
  Keywords: enzyme, nitrite reductase, oxidoreductase, denitrification,electron transport, periplasmic
  
• 1qg3.pdb. structural protein 19-apr-99 1qg3 As
  Title: crystal structure of a tandem pair of fibronectin type iii domains from the cytoplasmic tail of integrin alpha6 beta4
  Author: j. maria de pereda, g. wiche, r. c. liddington
  Keywords: integrin, hemidesmosome, fibronectin, carcinoma, structural protein
  
• 1qss.pdb. transferase/dna 23-jun-99 1qss Mg
  Title: ddgtp-trapped closed ternary complex of the large fragment of dna polymerase i from thermus aquaticus
  Author: y. li, v. mitaxov, g. waksman
  Keywords: protein-dna complex, closed, polymerase/dna, transferase/dna
  
• 464d.pdb. ribonucleic acid 14-apr-99 464d Sr I Na
  Title: disorder and twin refinement of rna heptamer double helix
  Author: u. mueller, y. a. muller, r. herbst-irmer, m. sprinzl, u. heinemann
  Keywords: 7 base-pair trna ala acceptor stem, double helix, ribonucleic acid, disordered model
  
• 466d.pdb. ribonucleic acid 14-apr-99 466d Sr Na
  Title: disorder and twin refinement of rna heptamer double helix
  Author: u. mueller, y. a. muller, r. herbst-irmer, m. sprinzl, u. heinemann
  Keywords: 7 base-pair trna ala acceptor stem, double helix, ribonucleic acid, disordered model
  
• 1c34.pdb. deoxyribonucleic acid 24-jul-99 1c34 (NMR)
  Title: solution structure of a quadruplex forming dna and its intermidiate
  Author: p. h. bolton, v. m. marathias, k. wang
  Keywords: aptamer, thrombin binding, potassium, metal binding sites, quadruplex, intermediate, deoxyribonucleic acid
  
• 1c3t.pdb. de novo protein, ubiquitin 28-jul-99 1c3t (NMR, 20 structures)
  Title: rotamer strain as a determinant of protein structural specificity
  Author: g. a. lazar, e. c. johnson, j. r. desjarlais, t. m. handel
  Keywords: protein design, hydrophobic core, packing, rotamers, roc, ubiquitin, de novo protein, ubiquitin
  
• 1bq5.pdb. oxidoreductase 21-aug-98 1bq5 Cu
  Title: nitrite reductase from alcaligenes xylosoxidans gifu 1051
  Author: t. inoue, m. gotowda, deligeer, s. suzuki, k. kataoka, k. yamaguchi, h. watanabe, m. goho, k. a. i. yasushi
  Keywords: oxidoreductase, nitrite reductase, cuproprotein
  
• 1bru.pdb. serine protease 24-aug-98 1bru
  Title: structure of porcine pancreatic elastase complexed with the elastase inhibitor gr143783
  Author: h. jhoti, o. m. p. singh, a. wonacott
  Keywords: serine protease, hydrolase
  
• 1cq5.pdb. ribonucleic acid 05-aug-99 1cq5 (NMR)
  Title: nmr structure of srp rna domain iv
  Author: u. schmitz, t. l. james, s. behrens, d. m. freymann, p. lukavsky, p. walter
  Keywords: srp, rna structure, nmr, domain iv, signal sequence recognition, ribonucleic acid
  
• 1c45.pdb. hydrolase 03-aug-99 1c45 Na
  Title: mutant human lysozyme with foreign n-terminal residues
  Author: k. takano, k. tsuchimori, y. yamagata, k. yutani
  Keywords: n-terminal, stability, hydrolase
  
• 1c35.pdb. deoxyribonucleic acid 25-jul-99 1c35 K (NMR)
  Title: solution structure of a quadruplex forming dna and its intermidiate
  Author: p. h. bolton, v. m. marathias, k. wang
  Keywords: aptamer, thrombin binding, potassium, metal binding sites, quadruplex, intermediate, deoxyribonucleic acid
  
• 1quu.pdb. contractile protein 03-jul-99 1quu
  Title: crystal structure of two central spectrin-like repeats from alpha-actinin
  Author: k. djinovic-carugo, p. young, m. gautel, m. saraste
  Keywords: triple-helix coiled coil, contractile protein
  
• 2u2f.pdb. rna-binding protein 26-may-99 2u2f (NMR)
  Title: solution structure of the second rna-binding domain of hu2af65
  Author: t. ito, y. muto, m. r. green, s. yokoyama
  Keywords: splicing, u2 snrnp, rbd, rna-binding protein
  
• 1c46.pdb. hydrolase 03-aug-99 1c46
  Title: mutant human lysozyme with foreign n-terminal residues
  Author: k. takano, k. tsuchimori, y. yamagata, k. yutani
  Keywords: n-terminal, stability, hydrolase
  
• 1c0v.pdb. membrane protein 22-jul-99 1c0v (NMR, 10 structures)
  Title: subunit c of the f1fo atp synthase of escherichia coli; nmr, 10 structures
  Author: m. e. girvin, v. k. rastogi, f. abildgaard, j. l. markley, r. h. fillingame
  Keywords: membrane protein, hydrogen ion transport
  
• 1u2f.pdb. rna-binding protein 26-may-99 1u2f (NMR)
  Title: solution structure of the first rna-binding domain of hu2af65
  Author: t. ito, y. muto, m. r. green, s. yokoyama
  Keywords: splicing, u2 snrnp, rbd, rna-binding protein
  
• 1qk6.pdb. toxin 16-jun-99 1qk6 (NMR, 10 structures)
  Title: solution structure of huwentoxin-i by nmr
  Author: y. qu, s. liang, j. ding, x. liu, r. zhang, x. gu
  Keywords: toxin, huwentoxin-i, spider, cystine knot
  
• 1qpf.pdb. isomerase 24-may-99 1qpf
  Title: fk506 binding protein (12 kda, human) complex with l-709,858
  Author: j. w. becker, j. rotonda
  Keywords: immunophilin-drug complex, cis-trans isomerase, peptidyl- prolyl isomerase
  
• 1skf.pdb. penicillin-binding 20-aug-98 1skf
  Title: crystal structure of the streptomyces k15 dd-transpeptidase
  Author: e. fonze, p. charlier
  Keywords: penicillin-binding, dd-transpeptidase, serine peptidase, beta-lactamase, hydrolase carboxypeptidase
  
• 1bq7.pdb. oxidoreductase 21-aug-98 1bq7
  Title: dsba mutant p151a, role of the cis-proline in the active site of dsba
  Author: j. -b. charbonnier, e. a. stura
  Keywords: disulfide oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center
  
• 1c9g.pdb. hydrolase 02-aug-99 1c9g Zn Ca (theoretical model)
  Title: "rkkh" peptides from the snake venom metalloproteinase of bothrops jararaca bind near the midas site of the human integrin alpha2 i-domain
  Author: o. pentikainen, a. -m. hoffren, j. ivaska, j. kapyla, t. nyronen, j. heino, m. s johnson
  Keywords: metalloproteinase, snake venom, hydrolase
  
• 1qk7.pdb. lectin 14-jun-99 1qk7 (NMR, 20 structures)
  Title: solution structure of selenocosmia huwena lectin-i(shl-i) by 2d-nmr
  Author: s. lu, s. liang, x. gu
  Keywords: lectin, selenocosmia huwena, shl-i, cystine knot
  
• 1bp8.pdb. deoxyribonucleic acid 13-aug-98 1bp8 Mg (NMR, 1 structure, minimized average structure)
  Title: 4:2:1 mithramycin:mg2+:d(acccgggt)2 complex
  Author: m. a. keniry, e. a. owen, r. h. shafer
  Keywords: mithramycin, dna, oligonucleotide, nmr, deoxyribonucleic acid
  
• 1cs8.pdb. hydrolase 17-aug-99 1cs8 He
  Title: crystal structure of procathepsin l
  Author: m. cygler, r. coulombe
  Keywords: prosegment, propeptide, inhibition, hydrolase
  
• 1c38.pdb. deoxyribonucleic acid 25-jul-99 1c38 K (NMR)
  Title: solution structure of a quadruplex forming dna and its intermediate
  Author: p. h. bolton, v. m. marathias, k. wang
  Keywords: aptamer, thrombin binding, potassium, metal ion binding sites, quadruplex, intermediate, deoxyribonucleic acid
  
• 1muy.pdb. dna repair 20-aug-98 1muy Fe
  Title: catalytic domain of muty from escherichia coli
  Author: y. guan, j. a. tainer
  Keywords: dna repair, dna g.a mismatch repair enzyme, glycosidase, hydrolase
  
• 1bqy.pdb. complex (hydrolase/inhibitor) 20-aug-98 1bqy
  Title: plasminogen activator (tsv-pa) from snake venom
  Author: m. a. a. parry, w. bode
  Keywords: hydrolase, fibrinolysis, plasminogen activator, serine proteinase, snake venom, complex (hydrolase/inhibitor)
  
• 1cqy.pdb. hydrolase 12-aug-99 1cqy
  Title: starch binding domain of bacillus cereus beta-amylase
  Author: h. j. yoon, a. hirata, m. adachi, a. sekine, s. utsumi, b. mikami
  Keywords: starch-binding domain, b-amylase, x-ray crystallography, 3d structure, hydrolase
  
• 1qey.pdb. gene regulation 03-apr-99 1qey (NMR, 27 structures)
  Title: nmr structure determination of the tetramerization domain of the mnt repressor: an asymmetric a-helical assembly in slow exchange
  Author: i. m. a. nooren, a. v. e. george, r. kaptein, r. t. sauer, r. boelens
  Keywords: oligomerization, transcriptional control, p22 mnt repressor, gene regulation
  
• 1qf9.pdb. kinase 07-apr-99 1qf9 Mg F Al
  Title: ph influences fluoride coordination number of the alfx phosphoryl transfer transition state analog in ump/cmp kinase
  Author: i. schlichting, j. reinstein
  Keywords: nucleoside monophosphate kinase, nmp kinase, phosphoryl transfer, transition state analog complex, transferase
  
• 1qsy.pdb. transferase/dna 24-jun-99 1qsy Mg
  Title: ddatp-trapped closed ternary complex of the large fragment of dna polymerase i from thermus aquaticus
  Author: y. li, v. mitaxov, g. waksman
  Keywords: protein-dna complex, closed, ddatp, polymerase/dna, transferase/dna
  
• 1gwz.pdb. hydrolase 22-aug-98 1gwz
  Title: crystal structure of the catalytic domain of the protein tyrosine phosphatase shp-1
  Author: j. yang, x. liang, t. niu, w. meng, z. zhao, g. w. zhou
  Keywords: hydrolase, protein tyrosine phosphatase, catalytic domain, wpd loop, sh2 domain
  
• 1cok.pdb. gene regulation 28-may-99 1cok (NMR, 18 structures)
  Title: structure of the c-terminal domain of p73
  Author: s. -w. chi, a. ayed, c. h. arrowsmith
  Keywords: p73 sam-like domain, gene regulation
  
• 1c9k.pdb. transferase 02-aug-99 1c9k Mg
  Title: the three dimensional structure of adenosylcobinamide kinase/ adenosylcobinamide phosphate gualylyltransferase (cobu) complexed with gmp: evidence for a substrate induced transferase active site
  Author: t. b. thompson, m. g. thomas, j. c. esclante-semerena, i. rayment
  Keywords: alpha/beta structure rossmann fold p-loop, transferase
  
• 1pdk.pdb. chaperone 29-mar-99 1pdk
  Title: papd-papk chaperone-pilus subunit complex from e.coli p pilus
  Author: k. fuetterer, f. g. sauer, s. j. hultgren, g. waksman
  Keywords: chaperone, pilus, bacterial adhesion
  
• 1qpl.pdb. isomerase 25-may-99 1qpl
  Title: fk506 binding protein (12 kda, human) complex with l-707,587
  Author: j. w. becker, j. rotonda
  Keywords: immunophilin-drug complex, cis-trans isomerase, peptidyl- prolyl isomerase
  
• 1qtm.pdb. transferase/dna 28-jun-99 1qtm Mg
  Title: ddttp-trapped closed ternary complex of the large fragment of dna polymerase i from thermus aquaticus
  Author: y. li, v. mitaxov, g. waksman
  Keywords: protein-dna complex, closed, ddttp, polymerase/dna, transferase/dna
  
• 1cqo.pdb. deoxyribonucleic acid 09-aug-99 1cqo (NMR)
  Title: nmr structure of the palindromic dna decamer d(gcgttaacgc)2
  Author: j. a. smith, v. t. tsui, w. j. chazin, d. a. case
  Keywords: double helix, b-dna, restriction site, hpa 1, deoxyribonucleic acid