Recent PDB releases or updates: week of 18 August 1999

• 1efp.pdb. electron transport 18-dec-98 1efp
  Title: electron transfer flavoprotein (etf) from paracoccus denitrificans
  Author: d. l. roberts, d. salazar, j. p. fulmer, f. e. frerman, j. j. -p. kim
  Keywords: electron transport, flavoprotein, glutaric acidemia type ii
  
• 1c40.pdb. oxygen storage/transport 03-aug-99 1c40 Fe
  Title: bar-headed goose hemoglobin (aquomet form)
  Author: s. li, x. liu, h. jing, z. hua, r. zhang, g. lu
  Keywords: oxygen transport, heme, respiratory protein, erythrocyte, oxygen storage/ transport, oxygen storage/transport
  
• 43ca.pdb. immunoglobulin 10-mar-99 43ca
  Title: crystallographic structure of the esterolytic and amidolytic 43c9 antibody with bound p-nitrophenol
  Author: m. m. thayer, e. d. getzoff, v. a. roberts
  Keywords: immunoglobulin, catalytic antibody
  
• 1bqq.pdb. complex (metalloproteinase/receptor) 18-aug-98 1bqq K Zn
  Title: crystal structure of the mt1-mmp--timp-2 complex
  Author: c. fernandez-catalan, w. bode, r. huber, d. turk, j. j. calvete, a. lichte, h. tschesche, k. maskos
  Keywords: matrix metalloproteinase, tissue inhibitor of metalloproteinases, proteinase complex, pro-gelatinase a activator, crystal structure, complex (metalloproteinase/receptor)
  
• 1c0q.pdb. inhibitor 20-jul-99 1c0q Cl
  Title: complex of vancomycin with 2-acetoxy-d-propanoic acid
  Author: p. j. loll, j. kaplan, b. selinsky, p. h. axelsen
  Keywords: glycopeptide antibiotic, inhibitor
  
• 1c3q.pdb. transferase 28-jul-99 1c3q Cl
  Title: crystal structure of native thiazole kinase in the monoclinic form
  Author: n. campobasso, i. i. mathews, t. p. begley, s. e. ealick
  Keywords: alpha-beta, atp binding, kinase, transferase
  
• 1tba.pdb. complex (transcription factors) 16-aug-98 1tba (NMR, 25 structures)
  Title: solution structure of a tbp-tafii230 complex: protein mimicry of the minor groove surface of the tata box unwound by tbp, nmr, 25 structures
  Author: d. liu, r. ishima, k. i. tong, s. bagby, t. kokubo, d. r. muhandiram, l. e. kay, y. nakatani, m. ikura
  Keywords: complex (transcription factors), tbp, taf, tafii230, tfiid, nmr, solution structure
  
• 2mob.pdb. oxidoreductase 10-mar-99 2mob (NMR, 15 structures)
  Title: methane monooxygenase component b
  Author: s. l. chang, b. j. wallar, j. d. lipscomb, k. h. mayo
  Keywords: oxidoreductase, monooxygenase, methane oxidation
  
• 1bqr.pdb. electron transport 17-aug-98 1bqr Cu
  Title: reduced pseudoazurin
  Author: t. inoue, n. nishio, s. hamanaka, t. shimomura, s. harada, s. suzuki, t. kohzuma, s. shidara, h. iwasaki, y. kai
  Keywords: electron transport, cuproprotein
  
• 1cjb.pdb. transferase 08-apr-99 1cjb Mg
  Title: malarial purine phosphoribosyltransferase
  Author: w. shi, c. m. li, p. c. tyler, r. h. furneaux, s. m. cahill, m. e. girvin, c. grubmeyer, v. l. schramm, s. c. almo, w. shi, c. m. li, p. c. tyler, r. h. furneaux, s. m. cahill, m. e. girvin, c. grubmeyer, v. l. schramm, s. c. almo
  Keywords: malaria, purine salvage, phosphoribosyltransferase, transition state inhibitor
  
• 1c0r.pdb. inhibitor 20-jul-99 1c0r Cl
  Title: complex of vancomycin with d-lactic acid
  Author: p. j. loll, j. kaplan, b. selinsky, p. h. axelsen
  Keywords: glycopeptide antibiotic, inhibitor
  
• 1c12.pdb. immune system 20-jul-99 1c12
  Title: insight in odorant perception: the crystal structure and binding characteristics of antibody fragments directed against the musk odorant traseolide
  Author: a. c. langedijk, s. spinelli, c. anguille, p. hermans, j. nederlof, j. butenandt, a. honegger, c. cambillau, a. pluckthun
  Keywords: antibody-antigen complex, scfv fragment, cdrh3, musk odorant, odorant specificity, immune system
  
• 1qj2.pdb. oxidoreductase 21-jun-99 1qj2 Mo Fe Se
  Title: co dehydrogenase from oligotropha carboxidovorans
  Author: h. dobbek, l. gremer, o. meyer, r. huber
  Keywords: molybdenum hydroxylase
  
• 1qdb.pdb. oxidoreductase 19-may-99 1qdb Fe Ca
  Title: cytochrome c nitrite reductase
  Author: o. einsle, a. messerschmidt, p. stach, r. huber, p. m. h. kroneck
  Keywords: c-type cytochrome lysine-coordinated heme nitrite reductase, oxidoreductase
  
• 1qvb.pdb. hydrolase 07-jul-99 1qvb
  Title: crystal structure of the beta-glycosidase from the hyperthermophile thermosphaera aggregans
  Author: y. -i. chi, l. a. martinez-cruz, r. v. swanson, d. e. robertson, s. - h. kim
  Keywords: tim-barrel, thermostable, hydrolase
  
• 1ebc.pdb. hemoprotein 04-mar-99 1ebc Fe
  Title: sperm whale met-myoglobin:cyanide complex
  Author: c. rosano, p. ascenzi, m. rizzi, r. losso, m. bolognesi
  Keywords: hemoprotein, oxigen storage, globins
  
• 1gfs.pdb. epimerase-reductase 17-aug-98 1gfs
  Title: gdp-fucose synthetase from e. coli
  Author: w. s. somers, m. l. stahl, f. x. sullivan
  Keywords: epimerase-reductase, nadp, gdp-fucose, lipopolysaccharide biosynthesis
  
• 1bj3.pdb. collagen binding protein 02-jul-98 1bj3 Ca
  Title: crystal structure of coagulation factor ix-binding protein (ix-bp) from venom of habu snake with a heterodimer of c- type lectin domains
  Author: h. mizuno, z. fujimoto, m. koizumi, h. kano, h. atoda, t. morita
  Keywords: coagulation factor ix-binding, heterodimer, venom, habu snake, c-type lectin superfamily, collagen binding protein
  
• 1bu3.pdb. calcium binding 30-aug-98 1bu3 Ca
  Title: refined crystal structure of calcium-bound silver hake (pi 4.2) parvalbumin at 1.65 a.
  Author: r. c. richardson, d. j. nelson, w. e. royer, d. j. harrington
  Keywords: calcium binding
  
• 1bqc.pdb. hydrolase 12-aug-98 1bqc
  Title: beta-mannanase from thermomonospora fusca
  Author: m. hilge, s. m. gloor, k. piontek
  Keywords: mannanase, glycosyl hydrolase, family 5, thermomonospora fusca
  
• 1bqs.pdb. membrane protein 18-aug-98 1bqs
  Title: the crystal structure of mucosal addressin cell adhesion molecule-1 (madcam-1)
  Author: k. tan, j. m. casasnovas, j. h. liu, m. j. briskin, t. a. springer, j. - h. wang
  Keywords: cell adhesion protein, madcam-1, immunoglobulin fold, i-set fold, cell adhesion glycoprotein, integrin recoginition, membrane protein
  
• 1ci3.pdb. electron transfer protein 07-apr-99 1ci3 Zn Fe
  Title: cytochrome f from the b6f complex of phormidium laminosum
  Author: c. j. carrell, b. g. schlarb, c. j. howe, d. s. bendall, w. a. cramer, j. l. smith
  Keywords: electron transfer protein, complex subunit
  
• 1ck3.pdb. hydrolase 27-apr-99 1ck3
  Title: n276d mutant of escherichia coli tem-1 beta-lactamase
  Author: p. swaren, l. maveyraud, j. p. samama
  Keywords: beta-lactamase, clavulanate-resistant, hydrolase
  
• 1vns.pdb. haloperoxidase 14-jan-99 1vns
  Title: recombinant apo-chloroperoxidase from curvularia inaequalis
  Author: s. macedo-ribeiro, a. messerschmidt
  Keywords: vanadium-containing haloperoxidase, sulphate, recombinant
  
• 5ukd.pdb. transferase 18-apr-99 5ukd Mg F Al
  Title: ph influences fluoride coordination number of the alfx phosphoryl transfer transition state analog
  Author: i. schlichting, j. reinstein
  Keywords: nucleoside monophosphate kinase, nmp kinase, phosphoryl transfer, transition state analog complex, transferase
  
• 3tat.pdb. aminotransferase 12-aug-98 3tat
  Title: tyrosine aminotransferase from e. coli
  Author: t. p. ko, w. z. yang, s. p. wu, h. tsai, h. s. yuan
  Keywords: aminotransferase, aromatic substrates, plp enzyme
  
• 1mhd.pdb. complex (transcription activator/dna) 18-aug-98 1mhd
  Title: crystal structure of a smad mh1 domain bound to dna
  Author: y. shi
  Keywords: complex (transcription activator/dna), smad3 mh1, smad binding element, dna
  
• 1bj4.pdb. transferase 02-jul-98 1bj4
  Title: recombinant serine hydroxymethyltransferase (human)
  Author: s. b. renwick, k. snell
  Keywords: transferase, metabolic role, pyridoxal 5'-phosphate
  
• 1bp4.pdb. hydrolase 12-aug-98 1bp4
  Title: use of papain as a model for the structure-based design of cathepsin k inhibitors. crystal structures of two papain inhibitor complexes demonstrate binding to s'-subsites.
  Author: j. m. lalonde, b. zhao, w. w. smith, c. a. janson, r. l. desjarlais, t. a. tomaszek, t. j. carr, s. k. thompson, d. s. yamashita, d. f. veber, s. s. abdel-mequid
  Keywords: hydrolase, sulfhydryl proteinase
  
• 1cn4.pdb. haematopoietic cytokine 25-may-99 1cn4
  Title: erythropoietin complexed with extracellular domains of erythropoietin receptor
  Author: r. m. stroud, s. w. reid
  Keywords: haematopoietic cytokine, cytokine receptor
  
• 2a5e.pdb. anti-oncogene 13-feb-98 2a5e (NMR, restrained minimized mean structure)
  Title: solution nmr structure of tumor suppressor p16ink4a, restrained minimized mean structure
  Author: i. -j. l. byeon, j. li, k. ericson, t. l. selby, a. tevelev, h. -j. kim, p. o'maille, m. -d. tsai
  Keywords: anti-oncogene, tumor-suppressor-p16ink4a
  
• 2a2u.pdb. lipid-binding protein 19-nov-98 2a2u
  Title: the crystal structures of a2u-globulin and its complex with a hyaline droplet inducer.
  Author: b. n. chaudhuri, g. j. kleywegt, t. a. jones
  Keywords: lipid-binding protein
  
• 1a4e.pdb. oxidoreductase 29-jan-98 1a4e Fe
  Title: catalase a from saccharomyces cerevisiae
  Author: m. j. mate
  Keywords: oxidoreductase, catalase, peroxidase
  
• 1a5e.pdb. anti-oncogene 13-feb-98 1a5e (NMR, 18 structures)
  Title: solution nmr structure of tumor suppressor p16ink4a, 18 structures
  Author: i. -j. l. byeon, j. li, k. ericson, t. l. selby, a. tevelev, h. -j. kim, p. o'maille, m. -d. tsai
  Keywords: cell cycle, anti-oncogene, repeat, ank repeat
  
• 1b35.pdb. virus/viral protein 17-dec-98 1b35
  Title: cricket paralysis virus (crpv)
  Author: j. g. tate, l. liljas, p. d. scotti, p. d. christian, t. w. lin, j. e. johnson
  Keywords: insect picorna-like virus, virus/viral protein
  
• 1vne.pdb. haloperoxidase 20-jan-99 1vne V
  Title: chloroperoxidase from the fungus curvularia inaequalis: mutant d292a
  Author: s. macedo-ribeiro, a. messerschmidt
  Keywords: vanadium-containing haloperoxidase, oxidoreductase, mutants
  
• 1bpv.pdb. connectin 11-aug-98 1bpv (NMR, 50 structures)
  Title: titin module a71 from human cardiac muscle, nmr, 50 structures
  Author: c. muhle-goll, a. pastore, m. nilges
  Keywords: titin, connectin, fibronectin type iii
  
• 1bq6.pdb. transferase 21-aug-98 1bq6
  Title: chalcone synthase from alfalfa with coenzyme a
  Author: j. -l. ferrer, m. e. bowman, j. jez, r. dixon, j. p. noel
  Keywords: transferase, polyketide synthase, chalcone biosynthesis
  
• 1c96.pdb. lyase 31-jul-99 1c96 Fe
  Title: s642a:citrate complex of aconitase
  Author: s. j. lloyd, h. lauble, g. s. prasad, c. d. stout
  Keywords: lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4fe-4s, 3d-structure
  
• 1vnf.pdb. haloperoxidase 20-jan-99 1vnf V
  Title: chloroperoxidase from the fungus curvularia inaequalis: mutant r360a
  Author: s. macedo-ribeiro, a. messerschmidt
  Keywords: vanadium-containing haloperoxidase, oxidoreductase, mutant r360a
  
• 2a2g.pdb. lipid-binding protein 19-nov-98 2a2g
  Title: the crystal structures of a2u-globulin and its complex with a hyaline droplet inducer.
  Author: b. n. chaudhuri, g. j. kleywegt, t. a. jones
  Keywords: lipid-binding protein
  
• 1chw.pdb. polypetide synthase 30-mar-99 1chw
  Title: chalcone synthase from alfalfa complexed with hexanoyl-coa
  Author: j. -l. ferrer, j. jez, m. e. bowman, r. dixon, j. p. noel
  Keywords: polypetide synthase, chalcone biosynthesis
  
• 1c97.pdb. lyase 31-jul-99 1c97 Fe
  Title: s642a:isocitrate complex of aconitase
  Author: s. j. lloyd, h. lauble, g. s. prasad, c. d. stout
  Keywords: lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4fe-4s, 3d-structure
  
• 1c47.pdb. transferase 11-aug-99 1c47 Cd
  Title: binding driven structural changes in crystaline phosphoglucomutase associated with chemical reaction
  Author: s. baranidharan, w. j. ray jr.
  Keywords: phosphoglucomutase, phosphotransferase with bound reaction intermediate
  
• 1vng.pdb. haloperoxidase 20-jan-99 1vng V
  Title: chloroperoxidase from the fungus curvularia inaequalis: mutant h404a
  Author: s. macedo-ribeiro, a. messerschmidt
  Keywords: vanadium-containing haloperoxidase, oxidoreductase
  
• 1qc7.pdb. flagellar motor switch protein 18-may-99 1qc7
  Title: t. maritima flig c-terminal domain
  Author: scott a. lloyd, frank g. whitby, david blair, christopher p. hill
  Keywords: null
  
• 1b9h.pdb. rifamycin biosynthesis (rifd gene) 11-feb-99 1b9h
  Title: crystal structure of 3-amino-5-hydroxybenzoic acid (ahba) synthase
  Author: j. c. eads, m. beeby, g. scapin, t. -w. yu, h. g. floss
  Keywords: rifamycin biosynthesis (rifd gene)
  
• 1c98.pdb. hormone/growth factor 01-aug-99 1c98 (NMR, 20 structures)
  Title: solution structure of neuromedin b
  Author: s. lee, y. kim
  Keywords: neuromedin b, nmr, peptide, hormone/growth factor
  
• 1vnh.pdb. haloperoxidase 20-jan-99 1vnh V
  Title: chloroperoxidase from the fungus curvularia inaequalis: mutant h496a
  Author: s. macedo-ribeiro, a. messerschmidt
  Keywords: vanadium-containing haloperoxidase, oxidoreductase, mutant h496a
  
• 43c9.pdb. immunoglobulin 10-mar-99 43c9
  Title: crystallographic structure of the esterolytic and amidolytic 43c9 antibody
  Author: m. m. thayer, e. d. getzoff, v. a. roberts
  Keywords: immunoglobulin
  
• 1bqi.pdb. hydrolase 16-aug-98 1bqi
  Title: use of papain as a model for the structure-based design of cathepsin k inhibitors. crystal structures of two papain inhibitor complexes demonstrate binding to s'-subsites.
  Author: j. m. lalonde, b. zhao, w. w. smith, c. a. janson, r. l. desjarlais, t. a. tomaszek, t. j. carr, s. k. thompson, d. s. yamashita, d. f. veber, s. s. abdel-mequid
  Keywords: hydrolase, sulfhydryl proteinase, papain
  
• 1b9i.pdb. rifamycin biosynthesis (rifd gene) 11-feb-99 1b9i
  Title: crystal structure of 3-amino-5-hydroxybenzoic acid (ahba) synthase
  Author: j. c. eads, m. beeby, g. scapin, t. -w. yu, h. g. floss
  Keywords: rifamycin biosynthesis (rifd gene)
  
• 1vni.pdb. haloperoxidase 20-jan-99 1vni V
  Title: chloroperoxidase from the fungus curvularia inaequalis: recombinant holo-chloroperoxidase
  Author: s. macedo-ribeiro, a. messerschmidt
  Keywords: vanadium-containing haloperoxidase, oxidoreductase, recombinant
  
• 1cgz.pdb. polypetide synthase 26-mar-99 1cgz
  Title: chalcone synthase from alfalfa complexed with resveratrol
  Author: j. -l. ferrer, j. jez, m. e. bowman, r. dixon, j. p. noel
  Keywords: polypetide synthase, chalcone biosynthesis
  
• 1c3j.pdb. transferase 28-jul-99 1c3j
  Title: t4 phage beta-glucosyltransferase: substrate binding and proposed catalytic mechanism
  Author: s. morera, a. imberty, u. aschke-sonnenborn, w. ruger, p. freemont
  Keywords: glycosyltransferase, 3d-structure
  
• 1bqk.pdb. electron transport 17-aug-98 1bqk Cu
  Title: oxidized pseudoazurin
  Author: t. inoue, n. nishio, s. hamanaka, t. shimomura, s. harada, s. suzuki, t. kohzuma, s. shidara, h. iwasaki, y. kai
  Keywords: cuproprotein, electron transport
  
• 1cml.pdb. polypeptide synthase 30-mar-99 1cml
  Title: chalcone synthase from alfalfa complexed with malonyl-coa
  Author: j. -l. ferrer, j. jez, m. e. bowman, r. dixon, j. p. noel
  Keywords: polypeptide synthase, chalcone biosynthesis
  
• 1c3l.pdb. hydrolase 28-jul-99 1c3l Ca Xe
  Title: subtilisin-carlsberg complexed with xenon (8 bar)
  Author: t. prange, m. schiltz, l. pernot, n. colloc'h, s. longhi
  Keywords: xenon, serine-proteinase, hydrolase
  
• 1qdl.pdb. synthase 20-may-99 1qdl
  Title: the crystal structure of anthranilate synthase from sulfolobus solfataricus
  Author: t. knoechel, a. ivens, g. hester, a. gonzalez, r. bauerle, m. wilmanns, k. kirschner, j. n. jansonius
  Keywords: tryptophan biosynthesis, anthranilate synthase, glutamine amidotransferase, allosteric interaction
  
• 1inm.pdb. membrane protein 06-sep-98 1inm (NMR, 1 structures)
  Title: nmr, representative structure
  Author: g. kelly, g. frankel, g. dougan, i. connerton, s. matthews
  Keywords: intimin, cell adhesion, ig, lectin, e.coli, membrane protein
  
• 2man.pdb. hydrolase 12-aug-98 2man
  Title: mannotriose complex of thermomonospora fusca beta-mannanase
  Author: m. hilge, s. m. gloor, k. piontek
  Keywords: mannanase, glycosyl hydrolase, family 5, thermomonospora fusca
  
• 3man.pdb. hydrolase 12-aug-98 3man
  Title: mannohexaose complex of thermomonospora fusca beta-mannanase
  Author: m. hilge, s. m. gloor, k. piontek
  Keywords: mannanase, glycosyl hydrolase, family 5, thermomonospora fusca, mannohexaose complex
  
• 2myo.pdb. ank-repeat 17-aug-98 2myo (NMR, minimized average structure)
  Title: solution structure of myotrophin, nmr, minimized average structure
  Author: y. yang, s. nanduri, s. sen, j. qin
  Keywords: myotrophin, acetylation, nmr, ank-repeat
  
• 1myo.pdb. ank-repeat 17-aug-98 1myo (NMR, 44 structures)
  Title: solution structure of myotrophin, nmr, 44 structures
  Author: y. yang, s. nanduri, s. sen, j. qin
  Keywords: myotrophin, acetylation, nmr, ank-repeat
  
• 1bqo.pdb. metalloprotease 17-aug-98 1bqo Zn Ca
  Title: discovery of potent, achiral matrix metalloproteinase inhibitors
  Author: s. pikul, k. l. m. dunham, n. g. almstead, b. de, m. g. natchus, m. v. anastasio, s. j. mcphail, c. e. snider, y. o. taiwo, t. j. rydel, c. m. dunaway, f. gu, g. e. mieling
  Keywords: stromelysin, matrix metalloprotease, osteoarthritis, structure-based drug design