Recent PDB releases or updates: week of 4 August 1999

• 16vp.pdb. transcriptional regulatory protein 11-feb-99 16vp
  Title: conserved core of the herpes simplex virus transcriptional regulatory protein vp16
  Author: y. liu, w. gong, c. c. huang, w. herr, x. cheng
  Keywords: transcriptional regulatory protein
  
• 1a76.pdb. 5'-3' exo/endo nuclease 20-mar-98 1a76 Mn
  Title: flap endonuclease-1 from methanococcus jannaschii
  Author: k. y. hwang, k. baek, h. kim, y. cho
  Keywords: 5'-3' exo/endo nuclease, dna replication, rth, rad27, dna repair
  
• 1a77.pdb. 5'-3' exo/endo nuclease 20-mar-98 1a77 Mg
  Title: flap endonuclease-1 from methanococcus jannaschii
  Author: k. y. hwang, k. baek, h. kim, y. cho
  Keywords: 5'-3' exo/endo nuclease, dna replication, rth, rad27, dna repair
  
• 1ao2.pdb. inhibitor 16-jul-97 1ao2 Co (NMR)
  Title: cobalt(iii)-deglycopepleomycin determined by nmr studies
  Author: j. caceres-cortes, h. sugiyama, k. ikudome, i. saito, a. h. -j. wang
  Keywords: anticancer drugs, deglycosylated pepleomycin, peplomycin, bleomycin, dna, two-dimensional nmr, solution structures, inhibitor
  
• 1ao4.pdb. inhibitor 16-jul-97 1ao4 Co (NMR)
  Title: cobalt(iii)-peplomycin complex determined by nmr studies
  Author: j. caceres-cortes, h. sugiyama, k. ikudome, i. saito, a. h. -j. wang
  Keywords: anticancer drugs, peplomycin, pepleomycin, bleomycin, dna, two-dimensional nmr, solution structures, inhibitor
  
• 1bjj.pdb. presynaptic neurotoxin 25-jun-98 1bjj Ca
  Title: agkistrodotoxin, a phospholipase a2-type presynaptic neurotoxin from agkistrodon halys pallas
  Author: l. tang, y. zhou, z. lin
  Keywords: presynaptic neurotoxin, phospholipase a2, hydrolase
  
• 1bm6.pdb. metalloprotease 29-jul-98 1bm6 Zn Ca (NMR, 20 structures)
  Title: solution structure of the catalytic domain of human stromelysin-1 complexed to a potent non-peptidic inhibitor, nmr, 20 structures
  Author: y. li, x. zhang, r. melton, v. ganu, n. c. gonnella
  Keywords: hydrolase, metalloprotease, metzincins
  
• 1bml.pdb. blood clotting/kinase 25-may-99 1bml
  Title: complex of the catalytic domain of human plasmin and streptokinase
  Author: x. wang, x. c. zhang
  Keywords: human plasmin, streptokinase, blood clotting/kinase
  
• 1bn5.pdb. aminopeptidase 31-jul-98 1bn5 Co
  Title: human methionine aminopeptidase 2
  Author: s. liu, j. widom, c. w. kemp, c. m. crews, j. c. clardy
  Keywords: methionine aminopeptidase, hydrolase
  
• 1boa.pdb. aminopeptidase 01-aug-98 1boa Co
  Title: human methionine aminopeptidase 2 complexed with angiogenesis inhibitor fumagillin
  Author: s. liu, j. widom, c. w. kemp, c. m. crews, j. c. clardy
  Keywords: methionine aminopeptidase, angiogenesis inhibitor, fumagillin, hydrolase
  
• 1c1m.pdb. hydrolase 22-jul-99 1c1m Ca Xe
  Title: porcine elastase under xenon pressure (8 bar)
  Author: t. prange, m. schiltz, l. pernot, n. colloc'h, s. longhi, w. bourguet, r. fourme
  Keywords: serine protease, hydrolase, pancreas elastase, xenon
  
• 1c1y.pdb. signaling protein, transferase 22-jul-99 1c1y Mg Ca
  Title: crystal structure of rap.gmppnp in complex with the ras- binding-domain of c-raf1 kinase (rafrbd).
  Author: n. nassar
  Keywords: gtp-binding proteins, protein-protein complex, effectors, signaling protein, transferase
  
• 1c26.pdb. gene regulation 22-jul-99 1c26
  Title: crystal structure of p53 tetramerization domain
  Author: p. d. jeffrey, s. gorina, n. p. pavletich
  Keywords: tetramer, gene regulation
  
• 1c28.pdb. serum protein 22-jul-99 1c28
  Title: the crystal structure of a complment-1q family protein suggests an evolutionary link to tumor necrosis factor
  Author: l. shaprio, p. scherer
  Keywords: acrp30 c1q tnf trimer all-beta, serum protein
  
• 1c2z.pdb. plant protein 23-jul-99 1c2z (theoretical model)
  Title: structure of wheatwin1-theoretical model
  Author: a. facchiano
  Keywords: mainly beta, wound induced protein, pathogenesis-related protein, plant protein
  
• 1ce8.pdb. ligase imp 18-mar-99 1ce8 Cl Mn K
  Title: carbamoyl phosphate synthetase from escherichis coli with complexed with the allosteric ligand imp
  Author: j. b. thoden, f. m. raushel, h. m. holden
  Keywords: imp, allosteric ligand, ligase imp
  
• 1ciw.pdb. sugar binding protein 06-apr-99 1ciw Mn Ca
  Title: peanut lectin complexed with n-acetyllactosamine
  Author: r. ravishankar, k. suguna, a. surolia, m. vijayan
  Keywords: lectin, legume lectin, water bridges, carbohydrate specificity, n-acetyllactosamine, protein crystallography, agglutinin, sugar binding protein
  
• 1cmx.pdb. hydrolase 12-may-99 1cmx
  Title: structural basis for the specificity of ubiquitin c- terminal hydrolases
  Author: s. c. johnston, s. m. riddle, r. e. cohen, c. p. hill
  Keywords: ubiquitin hydrolase, ubiquitin, deubiquitinating enzyme, cysteine protease, enzyme specificity
  
• 1coq.pdb. inhibitor 20-jul-99 1coq Cl
  Title: complex of vancomycin with 2-acetoxy-d-propanoic acid
  Author: p. j. loll, j. kaplan, b. selinsky, p. h. axelsen
  Keywords: glycopeptide antibiotic, inhibitor
  
• 1dlf.pdb. immunoglobulin 14-jul-98 1dlf
  Title: high resolution crystal structure of the fv fragment from an anti-dansyl switch variant antibody igg2a(s) crystallized at ph 5.25
  Author: m. nakasako, h. takahashi, i. shimada, y. arata
  Keywords: fv fragment, immunoglobulin
  
• 1mj2.pdb. complex (transcription regulation/dna) 27-jan-98 1mj2 Ca
  Title: methionine repressor mutant (q44k) plus corepressor (s-adenosyl methionine) complexed to a consensus operator sequence
  Author: c. w. garvie, s. e. v. phillips
  Keywords: transcription regulation, metj, methionine repressor, sheet-helix-helix, s-adenosyl methionine, dna, complex (transcription regulation/dna)
  
• 1mjm.pdb. complex (transcription regulation/dna) 30-jan-98 1mjm
  Title: methionine aporepressor mutant (q44k) complexed to half of the consensus operator sequence
  Author: c. w. garvie, s. e. v. phillips
  Keywords: transcription regulation, metj, methionine repressor, sheet-helix-helix, s-adenosyl methionine, dna, complex (transcription regulation/dna)
  
• 1mjo.pdb. complex (transcription regulation/dna) 28-jan-98 1mjo Ca
  Title: methionine holorepressor mutant (q44k) plus corepressor (s-adenosyl methionine) complexed to the minimal met consensus operator with the central ta step mutated to at
  Author: c. w. garvie, s. e. v. phillips
  Keywords: transcription regulation, metj, methionine repressor, sheet-helix-helix, s-adenosyl methionine, dna, complex (transcription regulation/dna)
  
• 1mjp.pdb. complex (transcription regulation/dna) 29-jan-98 1mjp
  Title: methionine aporepressor mutant (q44k) complexed to the minimal met consensus operator
  Author: c. w. garvie, s. e. v. phillips
  Keywords: complex (transcription regulation/dna), metj, methionine repressor, sheet-helix-helix, sam, s-adenosyl methionine
  
• 1mjq.pdb. complex (transcription regulation/dna) 30-jan-98 1mjq
  Title: methionine repressor mutant (q44k) plus corepressor (s-adenosyl methionine) complexed to an altered met consensus operator sequence
  Author: c. w. garvie, s. e. v. phillips
  Keywords: transcription regulation, metj, methionine repressor, sheet-helix-helix, s-adenosyl methionine, dna, complex (transcription regulation/dna)
  
• 1mos.pdb. glutamine amidotransferase 15-jul-98 1mos Na
  Title: isomerase domain of glucosamine 6-phosphate synthase complexed with 2-amino-2-deoxyglucitol 6-phosphate
  Author: a. teplyakov, g. obmolova, m. -a. badet-denisot, b. badet
  Keywords: glutamine amidotransferase, transferase, aminotransferase
  
• 1ng1.pdb. signal recognition 30-apr-98 1ng1 Mg Cd
  Title: n and gtpase domains of the signal sequence recognition protein ffh from thermus aquaticus
  Author: d. m. freymann, r. m. stroud, p. walter
  Keywords: ffh, srp, gtpase, signal recognition particle, gdp, mg
  
• 1ocr.pdb. oxidoreductase 07-jul-98 1ocr Mg Cu Zn Na Fe
  Title: bovine heart cytochrome c oxidase in the fully reduced state
  Author: t. tsukihara, m. yao
  Keywords: oxidoreductase (cytochrome(c)-oxygen), cytochrome c oxidase, reduced
  
• 1qch.pdb. deoxyribonucleic acid 05-may-99 1qch Na (NMR)
  Title: structure, dynamics and hydration of the nogalamycin- d(atgcat)2 complex determined by nmr and molecular dynamics simulations in solution
  Author: h. e. l. williams, m. s. searle
  Keywords: nogalamycin, nogalamycin-dna complex, nmr spectroscopy, anthracycline antibiotic, hydration, deoxyribonucleic acid
  
• 1qd8.pdb. inhibitor 15-jul-99 1qd8 Cl
  Title: complex of vancomycin with n-acetyl glycine
  Author: p. j. loll, j. kaplan, b. selinsky, p. h. axelsen
  Keywords: glycopeptide antibiotic, inhibitor
  
• 1qf3.pdb. sugar binding protein 06-apr-99 1qf3 Mn Ca
  Title: peanut lectin complexed with methyl-beta-galactose
  Author: r. ravishankar, k. suguna, a. surolia, m. vijayan
  Keywords: lectin, legume lectin, water bridges, carbohydrate specificity, methyl-beta-galactose, sugar binding protein
  
• 1qfk.pdb. serine protease 12-apr-99 1qfk Ca
  Title: structure of human factor viia and its implications for the triggering of blood coagulation
  Author: a. c. w. pike, a. m. brzozowski, s. m. roberts, o. h. olsen, e. persson
  Keywords: blood coagulation, serine protease
  
• 1qkj.pdb. transferase (glucosyltransferase) 22-jul-99 1qkj
  Title: t4 phage b-glucosyltransferase, substrate binding and proposed catalytic mechanism
  Author: s. morera, i. imberty, u. aschke-sonnenborn, w. ruger, p. s. freemont
  Keywords: transferase(glucosyltransferase)
  
• 1qqg.pdb. signal transduction 04-jun-99 1qqg
  Title: crystal structure of the ph-ptb targeting region of irs-1
  Author: s. dhe-paganon, s. e. shoelson
  Keywords: beta-sandwhich, signal transduction
  
• 1qsc.pdb. signaling protein 20-jun-99 1qsc
  Title: crystal structure of the traf domain of traf2 in a complex with a peptide from the cd40 receptor
  Author: s. m. mcwhirter, s. s. pullen, j. m. holton, j. j. crute, m. r. kehry, t. alber
  Keywords: tnf signaling, traf, cd40 receptor, adapter protein, cell survival, coiled coil, signaling protein
  
• 1rt4.pdb. nucleotidyltransferase 29-jul-98 1rt4 Cl
  Title: hiv-1 reverse transcriptase complexed with uc781
  Author: j. ren, d. k. stammers, d. i. stuart
  Keywords: nucleotidyltransferase, hiv-1 reverse transcriptase, aids, nonnucleoside inhibition, drug design
  
• 1rt5.pdb. nucleotidyltransferase 29-jul-98 1rt5 Cl
  Title: hiv-1 reverse transcriptase complexed with uc10
  Author: j. ren, d. k. stammers, d. i. stuart
  Keywords: nucleotidyltransferase, hiv-1 reverse transcriptase, aids, nonnucleoside inhibition, drug design
  
• 1rt6.pdb. nucleotidyltransferase 29-jul-98 1rt6 Cl
  Title: hiv-1 reverse transcriptase complexed with uc38
  Author: j. ren, d. k. stammers, d. i. stuart
  Keywords: nucleotidyltransferase, hiv-1 reverse transcriptase, aids, nonnucleoside inhibition, drug design
  
• 1rt7.pdb. nucleotidyltransferase 29-jul-98 1rt7 Cl
  Title: hiv-1 reverse transcriptase complexed with uc84
  Author: j. ren, d. k. stammers, d. i. stuart
  Keywords: nucleotidyltransferase, hiv-1 reverse transcriptase, aids, nucleoside inhibition, drug design
  
• 1shs.pdb. heat shock protein 30-jul-98 1shs
  Title: small heat shock protein from methanococcus jannaschii
  Author: k. k. kim, r. kim, s. -h. kim
  Keywords: heat shock protein, chaperone, beta-sandwich
  
• 1sws.pdb. binding protein 22-oct-98 1sws
  Title: core-streptavidin mutant d128a at ph 4.5
  Author: s. freitag, v. chu, i. le trong, l. a. klumb, r. to, p. s. stayton, r. e. stenkamp
  Keywords: biotin binding protein
  
• 1swt.pdb. binding protein 22-oct-98 1swt
  Title: core-streptavidin mutant d128a in complex with biotin at ph 4.5
  Author: s. freitag, i. le trong, v. chu, l. a. klumb, p. s. stayton, r. e. stenkamp
  Keywords: biotin binding protein
  
• 1tix.pdb. hydrolase 13-oct-98 1tix
  Title: thermostable xylanase i from thermoascus aurantiacus
  Author: l. lo leggio, r. w. pickersgill
  Keywords: xylanase, family 10, plant cell wall degradation, hydrolase
  
• 1ygh.pdb. gene regulation 27-may-99 1ygh
  Title: hat domain of gcn5 from saccharomyces cerevisiae
  Author: r. c. trievel, j. r. rojas, d. e. sterner, r. venkataramani, l. wang, j. zhou, c. d. allis, s. l. berger, r. marmorstein
  Keywords: transcriptional regulation, histone acetylation, n- acetyltransferase, gcn5 related n-acetyltransferase family, gene regulation