Recent PDB releases or updates: week of 23 June 1999

• 1bh8.pdb. transcription regulation complex 16-jun-98 1bh8
  Title: htafii18/htafii28 heterodimer crystal structure
  Author: c. birck, o. poch, c. romier, m. ruff, g. mengus, a. -c. lavigne, i. davidson, d. moras
  Keywords: htafii28, histone fold, tata binding protein, transcription regulation complex
  
• 1bh9.pdb. transcription regulation complex 16-jun-98 1bh9 Hg
  Title: htafii18/htafii28 heterodimer crystal structure with bound pcmbs
  Author: c. birck, o. poch, c. romier, m. ruff, g. mengus, a. -c. lavigne, i. davidson, d. moras
  Keywords: htafii18, histone fold, tata binding protein, transcription regulation complex
  
• 1bi5.pdb. polyketide synthase 22-jun-98 1bi5
  Title: chalcone synthase from alfalfa
  Author: j. -l. ferrer, m. e. bowman, j. jez, r. dixon, j. p. noel
  Keywords: polyketide synthase, chalcone biosynthesis
  
• 1bi2.pdb. repressor 21-jun-98 1bi2
  Title: structure of apo- and holo-diphtheria toxin repressor
  Author: e. pohl, w. g. j. hol
  Keywords: repressor, transcription regulation, dna-binding, iron
  
• 1bi3.pdb. repressor 21-jun-98 1bi3 Zn
  Title: structure of apo- and holo-diphtheria toxin repressor
  Author: e. pohl, w. g. j. hol
  Keywords: repressor, transcription regulation, dna-binding, iron
  
• 1bi1.pdb. repressor 21-jun-98 1bi1
  Title: structure of apo- and holo-diphtheria toxin repressor
  Author: e. pohl, w. g. j. hol
  Keywords: repressor, transcription regulation, dna-binding, iron
  
• 1bio.pdb. serine protease 18-jun-98 1bio
  Title: human complement factor d in complex with isatoic anhydride inhibitor
  Author: h. jing, y. s. babu, d. moore, j. m. kilpatrick, x. -y. liu, j. e. volanakis, s. v. l. narayana
  Keywords: serine protease, hydrolase, complement, factor d, catalytic triad, self-regulation
  
• 1bix.pdb. dna repair 19-jun-98 1bix Sm Pt
  Title: the crystal structure of the human dna repair endonuclease hap1 suggests the recognition of extra-helical deoxyribose at dna abasic sites
  Author: m. a. gorman, s. morera, d. g. rothwell, e. de la fortelle, c. d. mol, j. a. tainer, i. d. hickson, p. s. freemont
  Keywords: dna repair, endonuclease, hap1, ref-1, abasic site recognition
  
• 1bkc.pdb. zn-endopeptidase 23-apr-98 1bkc Zn
  Title: catalytic domain of tnf-alpha converting enzyme (tace)
  Author: k. maskos, c. fernandez-catalan, w. bode
  Keywords: zn-endopeptidase, hydrolase, tnf-alpha
  
• 1brm.pdb. oxidoreductase 24-aug-98 1brm
  Title: aspartate beta-semialdehyde dehydrogenase from escherichia coli
  Author: a. t. hadfield, g. kryger, j. ouyang, d. ringe, g. a. petsko, r. e. viola
  Keywords: crystal structure, dehydrogenase, escherichia coli, enzyme, nadp
  
• 1bt7.pdb. hydrolase 01-sep-98 1bt7 Zn (NMR, 20 structures)
  Title: the solution nmr structure of the n-terminal protease domain of the hepatitis c virus (hcv) ns3-protein, from bk strain, 20 structures
  Author: g. barbato, d. o. cicero, m. c. nardi, c. steinkuhler, r. cortese, r. de francesco, r. bazzo
  Keywords: hydrolase, viral non-structural protein, serine protease
  
• 1bzy.pdb. phosphoribosyltransferase 05-nov-98 1bzy Mg
  Title: human hgprtase with transition state inhibitor
  Author: w. shi, c. li, p. c. tyler, r. h. furneaux, c. grubmeyer, v. l. schramm, s. c. almo
  Keywords: phosphoribosyltransferase, immucillin, lesch-nyhan, hgprt, transition state, magnesium, pyrophosphate, oxocarbenium ion, neighboring group participation
  
• 1cf4.pdb. transferase 23-mar-99 1cf4 Mg (NMR, 20 structures)
  Title: cdc42/ack gtpase-binding domain complex
  Author: h. r. mott, d. owen, d. nietlispach, p. n. lowe, l. lim, e. d. laue
  Keywords: cdc42/ack gtpase complex, g protein, transferase
  
• 1cg4.pdb. ligase 26-mar-99 1cg4 Mg
  Title: structure of the mutant (r303l) of adenylosuccinate synthetase from e. coli complexed with, gdp, 6-phosphoryl- imp, and mg2+
  Author: j. y. choe, b. w. poland, h. fromm, r. honzatko
  Keywords: ligase, gtp-hydrolysing enzymes, purine 2 nucleotide biosynthesis, 6-phosporyl-imp
  
• 1cg3.pdb. ligase 26-mar-99 1cg3 Mg
  Title: structure of the mutant (r143l) of adenylosuccinate synthetase from e. coli complexed with hadacidin, gdp, 6- phosphoryl-imp, and mg2+
  Author: j. y. choe, b. w. poland, h. fromm, r. honzatko
  Keywords: ligase, gtp-hydrolysing enzymes, purine 2 nucleotide biosynthesis, 6-phosporyl-imp
  
• 1cg0.pdb. ligase 26-mar-99 1cg0 Mg
  Title: structure of adenylosuccinate synthetase from e. coli complexed with hadacidin, gdp, 6-phosphoryl-imp, and mg2+
  Author: j. y. choe, b. w. poland, h. fromm, r. honzatko
  Keywords: ligase, gtp-hydrolysing enzymes, purine 2 nucleotide biosynthesis, 6-phosporyl-imp
  
• 1cg1.pdb. ligase 26-mar-99 1cg1 Mg
  Title: structure of the mutant (k16q) of adenylosuccinate synthetase from e. coli complexed with hadacidin, gdp, 6- phosphoryl-imp, and mg2+
  Author: j. y. choe, b. w. poland, h. fromm, r. honzatko
  Keywords: ligase, gtp-hydrolysing enzymes, purine 2 nucleotide biosynthesis, 6-phosporyl-imp
  
• 1cja.pdb. transferase 08-apr-99 1cja
  Title: actin-fragmin kinase, catalytic domain from physarum polycephalum
  Author: s. steinbacher, p. hof, l. eichinger, m. schleicher, j. gettemans, j. vandekerckhove, r. huber, j. benz
  Keywords: kinase, actin, transferase
  
• 1ckl.pdb. glycoprotein 22-apr-99 1ckl Cl Ca
  Title: n-terminal two domains of human cd46 (membrane cofactor protein, mcp)
  Author: j. casasnovas, m. larvie, t. stehle
  Keywords: virus receptor, complement cofactor, short consensus repeat, scr, measles virus, glycoprotein
  
• 1co6.pdb. electron transport 05-jun-99 1co6 Fe
  Title: crystal structure of ferrocytochrome c2 from rhodopseudomonas viridis
  Author: k. miki, s. sogabe
  Keywords: electron transport(heme protein)
  
• 1cp6.pdb. hydrolase 08-jun-99 1cp6 B Zn
  Title: 1-butaneboronic acid binding to aeromonas proteolytica aminopeptidase
  Author: c. depaola, b. bennett, r. holz, d. ringe, g. petsko
  Keywords: hydrolase, aminopeptidase
  
• 4crx.pdb. protein/dna 20-apr-99 4crx
  Title: asymmetric dna-bending in the cre-loxp site-specific recombination synapse
  Author: f. guo, d. n. gopaul, g. d. vanduyne
  Keywords: cre recombinase, dna bending, recombination, protein-dna interaction, protein/dna
  
• 1eam.pdb. transferase 26-jan-99 1eam
  Title: vaccinia methyltransferase vp39 mutant (ec: 2.7.7.19)
  Author: g. hu, a. e. hodel, p. d. gershon, f. a. quiocho
  Keywords: methylated guanosine, methyltransferase mutant e233a, poly (a) polymerase, vaccinia, mrna processing, transcription
  
• 1eui.pdb. complex (hydrolase/inhibitor) 18-jun-98 1eui
  Title: escherichia coli uracil-dna glycosylase complex with uracil-dna glycosylase inhibitor protein
  Author: r. ravishankar, m. b. sagar, s. roy, k. purnapatre, p. handa, u. varshney, m. vijayan
  Keywords: glycosylase, inhibitor, dna repair, base excision, complex (hydrolase/inhibitor)
  
• 1f7e.pdb. blood clotting 19-feb-99 1f7e (NMR)
  Title: the first egf-like domain from human blood coagulation fvii, nmr, 20 structures
  Author: y. -h. kao, g. f. lee, y. wang, m. a. starovasnik, r. f. kelley, m. w. spellman, l. lerner
  Keywords: factor vii, blood coagulation, egf-like domain, blood clotting
  
• 1f7m.pdb. blood clotting 19-feb-99 1f7m (NMR)
  Title: the first egf-like domain from human blood coagulation fvii, nmr, minimized average structure
  Author: y. -h. kao, g. f. lee, y. wang, m. a. starovasnik, r. f. kelley, m. w. spellman, l. lerner
  Keywords: factor vii, blood coagulation, egf-like domain, blood clotting
  
• 1ff7.pdb. blood clotting 19-feb-99 1ff7 (NMR)
  Title: the first egf-like domain from human blood coagulation fvii (fucosylated at ser-60), nmr, 20 structures
  Author: y. -h. kao, g. f. lee, y. wang, m. a. starovasnik, r. f. kelley, m. w. spellman, l. lerner
  Keywords: factor vii, blood coagulation, egf-like domain, glycoprotein, fucosylation, o-linked fucose, blood clotting
  
• 1ffm.pdb. blood clotting 19-feb-99 1ffm (NMR)
  Title: the first egf-like domain from human blood coagulation fvii (fucosylated at ser-60), nmr, minimized average structure
  Author: y. -h. kao, g. f. lee, y. wang, m. a. starovasnik, r. f. kelley, m. w. spellman, l. lerner
  Keywords: factor vii, blood coagulation, egf-like domain, glycoprotein, fucosylation, o-linked fucose, blood clotting
  
• 1hfd.pdb. serine protease 18-jun-98 1hfd
  Title: human complement factor d in a p21 crystal form
  Author: h. jing, y. s. babu, d. moore, j. m. kilpatrick, x. -y. liu, j. e. volanakis, s. v. l. narayana
  Keywords: serine protease, hydrolase, complement, factor d, catalytic triad, self-regulation
  
• 4mat.pdb. hydrolase(alpha-aminoacylpeptide) 29-mar-99 4mat Na
  Title: e.coli methionine aminopeptidase his79ala mutant
  Author: w. t. lowther, a. m. orville, d. t. madden, s. lim, d. h. rich, b. w. matthews
  Keywords: hydrolase(alpha-aminoacylpeptide), site-directed mutant
  
• 2mat.pdb. hydrolase(alpha-aminoacylpeptide) 29-mar-99 2mat Co Na
  Title: e.coli methionine aminopeptidase at 1.9 angstrom resolution
  Author: w. t. lowther, a. m. orville, d. t. madden, s. lim, d. h. rich, b. w. matthews
  Keywords: hydrolase(alpha-aminoacylpeptide)
  
• 3mat.pdb. hydrolase(alpha-aminoacylpeptide) 29-mar-99 3mat Co Na
  Title: e.coli methionine aminopeptidase transition-state inhibitor complex
  Author: w. t. lowther, a. m. orville, d. t. madden, s. lim, d. h. rich, b. w. matthews
  Keywords: hydrolase(alpha-aminoacylpeptide), transition-state analog
  
• 1mfr.pdb. iron storage 18-jun-98 1mfr Mg
  Title: crystal structure of m ferritin
  Author: y. ha, d. shi, n. m. allewell
  Keywords: iron storage, diiron
  
• 1mfi.pdb. cytokine 12-aug-98 1mfi F
  Title: crystal structure of macrophage migration inhibitory factor complexed with (e)-2-fluoro-p-hydroxycinnamate
  Author: a. b. taylor, w. h. johnson junior, r. m. czerwinski, c. p. whitman, m. l. hackert
  Keywords: cytokine, macrophage, inflammatory response, tautomerase
  
• 1prg.pdb. thiazolidinedione 02-jul-98 1prg
  Title: ligand-binding domain of the human peroxisome proliferator activated receptor gamma
  Author: r. t. nolte, g. b. wisely, m. v. milburn
  Keywords: thiazolidinedione, ligand-binding domain, nuclear receptor, apo, transcription factor, orphan receptor
  
• 1qax.pdb. oxidoreductase 06-apr-99 1qax
  Title: ternary complex of pseudomonas mevalonii hmg-coa reductase with hmg-coa and nad+
  Author: l. tabernero, d. a. bochar, v. w. rodwell, c. v. stauffacher
  Keywords: 4-electron oxido-reductase, oxidoreductase
  
• 1qay.pdb. oxidoreductase 07-apr-99 1qay
  Title: ternary complex of pseudomonas mevalonii hmg-coa reductase with mevalonate and nad+
  Author: l. tabernero, d. a. bochar, v. w. rodwell, c. v. stauffacher
  Keywords: 4-electron oxido-reductase, oxidoreductase
  
• 1qbq.pdb. transferase 27-apr-99 1qbq Zn
  Title: structure of rat farnesyl protein transferase complexed with a cvim peptide and alpha-hydroxyfarnesylphosphonic acid.
  Author: c. l. strickland, w. t. windsor, r. syto, l. wang, r. bond, z. wu, j. schwartz, h. v. le, l. s. beese, p. c. weber
  Keywords: alpha-alpha-barrel helical crescent, transferase
  
• 1qdn.pdb. fusion protein 21-may-99 1qdn
  Title: amino terminal domain of the n-ethylmaleimide sensitive fusion protein (nsf)
  Author: a. p. may, k. m. s. misura, s. w. whiteheart, w. i. weis
  Keywords: double-psi beta barrel alpha/beta barrel, vesicular-fusion protein
  
• 1qg4.pdb. gtpase 20-apr-99 1qg4 Mg
  Title: canine gdp-ran f72y mutant
  Author: h. m. kent, m. s. moore, b. b. quimby, a. m. e. baker, a. j. mccoy, g. a. murphy, a. h. corbett, m. stewart
  Keywords: gtpase, nuclear transport
  
• 1qg2.pdb. gtpase 20-apr-99 1qg2 Mg
  Title: canine gdp-ran r76e mutant
  Author: h. m. kent, m. s. moore, b. b. quimby, a. m. e. baker, a. j. mccoy, g. a. murphy, a. h. corbett, m. stewart
  Keywords: gtpase, nuclear transport
  
• 1qp1.pdb. immune system 30-may-99 1qp1
  Title: kappa variable light chain
  Author: l. k. steinrauf
  Keywords: beta sandwich, double spiral, immune system
  
• 1qq4.pdb. hydrolase 10-jun-99 1qq4
  Title: crystal structure of an alpha-lytic protease mutant with accelerated folding kinetics, r102h/g134s
  Author: a. i. derman, t. mau, d. a. agard
  Keywords: double beta barrel, bacterial serine protease, hydrolase
  
• 1qqr.pdb. hydrolase activator 07-jun-99 1qqr
  Title: crystal structure of streptokinase domain b
  Author: g. spraggon, x. x. zhang, c. p. ponting, v. f. fox, c. phillips, r. a. g. smith, e. y. jones, c. dobson, d. i. stuart
  Keywords: non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator
  
• 1qqp.pdb. virus/viral protein 20-may-99 1qqp
  Title: foot-and-mouth disease virus/ oligosaccharide receptor complex.
  Author: e. e. fry, s. m. lea, t. jackson, j. w. i. newman, f. m. ellard, w. e. blakemore, r. abu- ghazaleh, a. samuel, a. m. q. king, d. i. stuart
  Keywords: virus, heparan sulphate, virus-receptor interactions/protein-carbohydrate interactions, virus/viral protein
  
• 1qqh.pdb. virus/viral protein 05-jun-99 1qqh
  Title: 2.1 a crystal structure of the human papillomavirus type 18 e2 activation domain
  Author: s. f. harris, m. r. botchan
  Keywords: amphipathic helix, cashew/kidney shape, virus/viral protein
  
• 1qrw.pdb. hydrolase 16-jun-99 1qrw
  Title: crystal structure of an alpha-lytic protease mutant with accelerated folding kinetics, r102h/g134s, ph 8
  Author: a. i. derman, t. mau, d. a. agard
  Keywords: protein folding, folding kinetics, pro region, hydrolase
  
• 1qrp.pdb. hydrolase/hydrolase inhibitor 15-jun-99 1qrp
  Title: human pepsin 3a in complex with a phosphonate inhibitor iva- val-val-leu(p)-(o) phe-ala-ala-ome
  Author: m. fujinaga, m. m. cherney, n. i. tarasova, p. a. bartlett, j. e. hanson, m. n. g. james
  Keywords: aspartic proteinase, phosphonate inhibitor, transition state analogue, hydrolase/hydrolase inhibitor
  
• 1qrx.pdb. hydrolase 16-jun-99 1qrx
  Title: crystal structure of wild-type alpha-lytic protease at 1.6 a, ph 5.14
  Author: a. i. derman, t. mau, d. a. agard
  Keywords: protein folding, pro region, hydrolase
  
• 2tob.pdb. aminoglycoside-rna recognition 17-jun-98 2tob (NMR, 13 structures)
  Title: solution structure of the tobramycin-rna aptamer complex, nmr, 13 structures
  Author: l. jiang, d. j. patel
  Keywords: aminoglycoside-rna recognition, tobramycin
  
• 1upf.pdb. transferase 17-jun-98 1upf F
  Title: structure of the uracil phosphoribosyltransferase, mutant c128v bound to the drug 5-fluorouracil
  Author: m. a. schumacher, d. carter, d. scott, d. roos, b. ullman, r. g. brennan
  Keywords: transferase, glycosyltransferase, phosphoribosyltransferase
  
• 2up1.pdb. complex (ribonucleoprotein/dna) 10-jul-98 2up1
  Title: structure of up1-telomeric dna complex
  Author: j. ding, m. k. hayashi, a. r. krainer, r. -m. xu
  Keywords: complex (ribonucleoprotein/dna), heterogeneous nuclear ribonucleoprotein a1