Recent PDB releases or updates: week of 16 June 1999

• 414d.pdb. deoxyribonucleic acid 13-jul-98 414d
  Title: 5'-d(*gp*gp*gp*gp*cp*gp*cp*cp*cp*c)-3'
  Author: g. savitha, m. a. viswamitra
  
  
• 434d.pdb. ribonucleic acid 23-oct-98 434d Sr Na
  Title: 5'-r(*up*ap*gp*cp*up*cp*c)-3', 5'-r(*gp*gp*gp*gp*cp*up*a)-3'
  Author: u. mueller, h. schuebel, m. sprinzl, u. heinemann
  
  
• 435d.pdb. ribonucleic acid 23-oct-98 435d Na
  Title: 5'-r(*up*ap*gp*cp*cp*cp*c)-3', 5'-r(*gp*gp*gp*gp*cp*up*a)-3'
  Author: u. mueller, h. schuebel, m. sprinzl, u. heinemann
  
  
• 475d.pdb. deoxyribonucleic acid 03-jun-99 475d Cl Mg Na
  Title: water and ions in a high resolution structure of b-dna
  Author: m. soler-lopez, l. malinina, j. liu, t. huynh-dinh, j. a. subirana
  
  
• 1b4b.pdb. repressor 18-dec-98 1b4b
  Title: structure of the oligomerization domain of the arginine repressor from bacillus stearothermophilus
  Author: j. ni, v. sakanyan, d. charlier, n. glansdorff, g. d. van duyne
  
  
• 1b4s.pdb. phosphotransferase 28-dec-98 1b4s Mg
  Title: structure of nucleoside diphosphate kinase h122g mutant
  Author: p. meyer, j. janin
  
  
• 1b4a.pdb. repressor 18-dec-98 1b4a
  Title: structure of the arginine repressor from bacillus stearothermophilus
  Author: j. ni, v. sakanyan, d. charlier, n. glansdorff, g. d. van duyne
  
  
• 1b4j.pdb. antibody engineering 22-dec-98 1b4j
  Title: comparison of the three-dimensional structures of a humanized and a chimeric fab of an anti-gamma-interferon antibody
  Author: z. fan, l. shan, b. z. goldsteen, l. w. guddat, a. thakur, n. f. landolfi, m. s. co, m. vasques, c. queen, p. a. ramsland, a. b. edmundson
  
  
• 1b55.pdb. transferase 12-jan-99 1b55 Zn
  Title: ph domain from bruton's tyrosine kinase in complex with inositol 1,3,4,5-tetrakisphosphate
  Author: k. djinovic carugo, e. baraldi, m. hyvoenen, p. lo surdo, a. m. riley, b. v. l. potter, r. o'brien, j. e. ladbury, m. saraste
  
  
• 1b6v.pdb. molecular evolution 18-jan-99 1b6v
  Title: crystal structure of a hybrid between ribonuclease a and bovine seminal ribonuclease
  Author: e. h. vatzaki, s. c. allen, d. d. leonidas, k. r. acharya
  
  
• 1b6e.pdb. nk cell 14-jan-99 1b6e
  Title: human cd94
  Author: j. c. boyington, a. n. riaz, a. patamawenu, j. e. coligan, a. g. brooks, p. d. sun
  
  
• 1b6c.pdb. complex (isomerase/protein kinase) 13-jan-99 1b6c
  Title: crystal structure of the cytoplasmic domain of the type i tgf-beta receptor in complex with fkbp12
  Author: m. huse, y. -g. chen, j. massague, j. kuriyan
  
  
• 1bg9.pdb. hydrolase 05-jun-98 1bg9 Ca
  Title: barley alpha-amylase with substrate analogue acarbose
  Author: a. kadziola, r. haser
  
  
• 1bh4.pdb. cyclic peptide 12-jun-98 1bh4 (NMR, 12 structures)
  Title: circulin a from chassalia parviflora, nmr, 12 structures
  Author: n. l. daly, a. koltay, d. j. craik
  
  
• 1bhi.pdb. dna-binding regulatory protein 09-jun-98 1bhi (NMR, 20 structures)
  Title: structure of transactivation domain of cre-bp1/atf-2, nmr, 20 structures
  Author: a. nagadoi, k. nakazawa, h. uda, t. maekawa, s. ishii, y. nishimura
  
  
• 1bq0.pdb. chaperone 20-aug-98 1bq0 (NMR, 20 structures)
  Title: j-domain (residues 1-77) of the escherichia coli n-terminal fragment (residues 1-104) of the molecular chaperone dnaj, nmr, 20 structures
  Author: k. huang, j. m. flanagan, j. h. prestegard
  
  
• 1bqz.pdb. chaperone 20-aug-98 1bqz (NMR, 20 structures)
  Title: j-domain (residues 1-77) of the escherichia coli n-terminal fragment (residues 1-78) of the molecular chaperone dnaj, nmr, 20 structures
  Author: k. huang, j. m. flanagan, j. h. prestegard
  
  
• 1bs3.pdb. oxidoreductase 31-aug-98 1bs3 F Fe
  Title: p.shermanii sod(fe+3) fluoride
  Author: m. schmidt
  
  
• 1bsm.pdb. oxidoreductase 28-aug-98 1bsm Fe
  Title: p.shermanii sod(fe+3) 140k ph8
  Author: m. schmidt
  
  
• 1bt8.pdb. oxidoreductase 01-sep-98 1bt8 Fe
  Title: p.shermanii sod(fe+3) ph 10.0
  Author: m. schmidt
  
  
• 1bu2.pdb. cell cycle regulation 10-sep-98 1bu2
  Title: x-ray structure of a viral cyclin from herpesvirus saimiri
  Author: u. schulze-gahmen, j. u. jung, s. -h. kim
  
  
• 1bw5.pdb. dna-binding protein 29-sep-98 1bw5 (NMR, 50 structures)
  Title: the nmr solution structure of the homeodomain of the rat insulin gene enhancer protein isl-1, 50 structures
  Author: j. h. ippel, g. larsson, g. behravan, j. zdunek, m. lundqvist, j. schleucher, p. -o. lycksell, s. s. wijmenga
  
  
• 1bwn.pdb. transferase 25-sep-98 1bwn Zn
  Title: ph domain and btk motif from bruton's tyrosine kinase mutant e41k in complex with ins(1,3,4,5)p4
  Author: k. djinovic carugo, e. baraldi, m. hyvoenen, p. lo surdo, a. riley, b. potter, m. saraste
  
  
• 1bxv.pdb. copper protein 09-oct-98 1bxv Cu
  Title: reduced plastocyanin from synechococcus sp.
  Author: t. inoue, h. sugawara, s. hamanaka, h. tsukui, e. suzuki, t. kohzuma, y. kai
  
  
• 1bxu.pdb. copper protein 09-oct-98 1bxu Cu
  Title: oxidized plastocyanin from synechococcus sp.
  Author: t. inoue, h. sugawara, s. hamanaka, h. tsukui, e. suzuki, t. kohzuma, y. kai
  
  
• 1bxm.pdb. fungal toxic elicitor 05-oct-98 1bxm
  Title: engineered beta-cryptogein complexed with ergosterol
  Author: g. boissy, s. brunie
  
  
• 1byi.pdb. ligase 15-oct-98 1byi
  Title: structure of apo-dethiobiotin synthase at 0.97 angstroms resolution
  Author: t. sandalova, g. schneider, h. kaeck, y. lindqvist
  
  
• 1cb3.pdb. molten globule state 26-feb-99 1cb3 (NMR)
  Title: local interactions drive the formation of non-native structure in the denatured state of human alpha- lactalbumin: a high resolution structural characterization of a peptide model in aqueous solution
  Author: s. j. demarest, y. hua, d. p. raleigh
  
  
• 1cn3.pdb. viral protein 24-may-99 1cn3
  Title: interaction of polyomavirus internal protein vp2 with major capsid protein vp1 and implications for participation of vp2 in viral entry
  Author: x. chen, t. stehle, s. c. harrison
  
  
• 1co4.pdb. translation/regulation protein 04-jun-99 1co4 Zn (NMR, 15 structures)
  Title: solution structure of a zinc domain conserved in yeast copper-regulated transcription factors
  Author: r. b. turner, d. l. smith, m. e. zawrotny, m. f. summers, m. c. posewitz, d. r. winge
  
  
• 1coc.pdb. deoxyribonucleic acid 26-may-99 1coc (NMR, minimized average structure)
  Title: solution-state structure of a dna dodecamer duplex containing a cis-syn thymine cyclobutane dimer.
  Author: k. mcateer, y. jing, j. kao, j. -s. taylor, m. a. kennedy
  
  
• 1coj.pdb. oxidoreductase 28-may-99 1coj Fe
  Title: fe-sod from aquifex pyrophilus, a hyperthermophilic bacterium
  Author: j. h. lim, y. g. yu, s. -h. kim, s. -j. cho, b. y. ahn, y. s. han, y. cho
  
  
• 1co8.pdb. oxygen transport 07-jun-99 1co8 Fe
  Title: recombinant sperm whale myoglobin l104a mutant (met)
  Author: e. c. liong, g. n. phillips junior
  
  
• 1co9.pdb. oxygen transport 07-jun-99 1co9 Fe
  Title: recombinant sperm whale myoglobin l104v mutant (met)
  Author: e. c. liong, g. n. phillips junior
  
  
• 1cpw.pdb. oxygen transport 07-jun-99 1cpw Fe
  Title: recombinant sperm whale myoglobin l104w mutant (met)
  Author: e. c. liong, g. n. phillips junior
  
  
• 1cpu.pdb. hydrolase 07-jun-99 1cpu Cl Ca
  Title: subsite mapping of the active site of human pancreatic alpha-amylase using substrates, the pharmacological inhibitor acarbose, and an active site variant
  Author: g. d. brayer, g. sidhu, r. maurus, e. h. rydberg, c. braun, y. wang, n. t. nguyen, c. m. overall, s. g. withers
  
  
• 1cp5.pdb. oxygen transport 07-jun-99 1cp5 Fe
  Title: recombinant sperm whale myoglobin l104f mutant (met)
  Author: e. c. liong, g. n. phillips junior
  
  
• 1cp0.pdb. oxygen transport 07-jun-99 1cp0 Fe
  Title: recombinant sperm whale myoglobin l104n mutant (met)
  Author: e. c. liong, g. n. phillips junior
  
  
• 2ecp.pdb. acarbose 27-oct-98 2ecp
  Title: the crystal structure of the e. coli maltodextrin phosphorylase complex
  Author: m. o'reilly, k. a. watson, l. n. johnson
  
  
• 1ial.pdb. nuclear import receptor 12-jan-99 1ial
  Title: importin alpha, mouse
  Author: b. kobe
  
  
• 1iga.pdb. immunoglobulin 23-dec-98 1iga (theoretical model; scattering fitting)
  Title: model of human iga1 determined by solution scattering curve-fitting and homology modelling
  Author: m. k. boehm, j. m. woof, m. a. kerr, s. j. perkins
  
  
• 1im1.pdb. peptide toxin 18-nov-98 1im1 (NMR, 20 structures)
  Title: nmr solution structure of alpha-conotoxin im1, 20 structures
  Author: j. p. rogers, p. luginbuhl, g. s. shen, r. t. mccabe, r. c. stevens, d. e. wemmer
  
  
• 1n15.pdb. oxidoreductase 04-sep-98 1n15 Fe
  Title: following the c heme reduction in nitrite reductase from pseudomonas aeruginosa
  Author: d. nurizzo, m. tegoni, c. cambillau
  
  
• 1n50.pdb. oxidoreductase 04-sep-98 1n50 Fe
  Title: following the c heme reduction in nitrite reductase from pseudomonas aeruginosa
  Author: d. nurizzo, m. tegoni, c. cambillau
  
  
• 1n90.pdb. oxidoreductase 04-sep-98 1n90 Fe
  Title: following the c heme reduction in nitrite reductase from pseudomonas aeruginosa
  Author: d. nurizzo, m. tegoni, c. cambillau
  
  
• 2ncd.pdb. contractile protein 04-jun-99 2ncd
  Title: ncd (non-claret disjunctional) dimer from d. melanogaster
  Author: e. p. sablin, r. b. case, s. c. dai, c. l. hart, a. ruby, r. d. vale, r. j. fletterick
  
  
• 1ork.pdb. transcription regulation 21-may-98 1ork Mg
  Title: tet repressor, class d in complex with 9-(n,n-dimethylglycylamido)-6-demethyl-6-deoxy-tetracycline
  Author: p. orth, d. schnappinger, p. -e. sum, g. a. ellestad, w. hillen, w. saenger, w. hinrichs
  
  
• 2pgi.pdb. isomerase 27-oct-98 2pgi
  Title: the crystal structure of phosphoglucose isomerase - an enzyme with autocrine motility factor activity in tumor cells
  Author: y. -j. sun, c. -c. chou, w. -s. chen, m. meng, c. -d. hsiao
  
  
• 2psr.pdb. ef-hand protein 17-sep-98 2psr Zn Ca
  Title: human psoriasin (s100a7) ca2+ and zn2+ bound form (crystal form ii)
  Author: d. e. brodersen, j. nyborg, m. kjeldgaard
  
  
• 3psr.pdb. ef-hand protein 17-sep-98 3psr Zn Ca
  Title: human psoriasin (s100a7) ca2+ bound form (crystal form i)
  Author: d. e. brodersen, j. nyborg, m. kjeldgaard
  
  
• 1pvl.pdb. leucotoxin 12-jan-99 1pvl
  Title: structure of the panton-valentine leucocidin f component from staphylococcus aureus
  Author: j. d. pedelacq, l. mourey, l. maveyraud, g. prevost, j. p. samama
  
  
• 1qcf.pdb. tyrosine kinase 04-may-99 1qcf
  Title: crystal structure of hck in complex with a src family- selective tyrosine kinase inhibitor
  Author: t. schindler, f. sicheri, a. pico, a. gazit, a. levitzki, j. kuriyan
  
  
• 1qc9.pdb. endonuclease 18-may-99 1qc9
  Title: the crystallographic structure of restriction endonuclease eco ri at 3.3 a in the absense of dna
  Author: k. chandrasekhar, m. m. horvath, c. samudzi, j. choi, j. m. rosenberg
  
  
• 1qhf.pdb. transferase 13-may-99 1qhf
  Title: yeast phosphoglycerate mutase-3pg complex structure to 1.7 a
  Author: g. crowhurst, j. littlechild, h. c. watson
  
  
• 1qpv.pdb. actin-binding protein 29-may-99 1qpv
  Title: yeast cofilin
  Author: a. a. fedorov, p. lappalainen, e. v. fedorov, d. g. drubin, s. c. almo
  
  
• 1qp6.pdb. de novo protein 01-jun-99 1qp6 (NMR, 16 structures)
  Title: solution structure of alpha2d
  Author: r. b. hill, w. f. degrado
  
  
• 1qp7.pdb. gene regulation/dna 01-jun-99 1qp7
  Title: purine repressor mutant-hypoxanthine-palindromic operator complex
  Author: a. glasfeld, a. n. koehler, m. a. schumacher, r. g. brennan
  
  
• 1qp4.pdb. gene regulation/dna 01-jun-99 1qp4
  Title: purine repressor-hypoxanthine-palindromic operator complex
  Author: a. glasfeld, a. n. koehler, m. a. schumacher, r. g. brennan
  
  
• 1qp5.pdb. deoxyribonucleic acid 01-jun-99 1qp5 Mg
  Title: base-pairing shift in a dodecamer containing a (ca)n tract
  Author: y. timsit, e. vilbois, d. moras
  
  
• 1qps.pdb. hydrolase/dna 28-may-99 1qps Mn
  Title: the crystal structure of a post-reactive cognate dna-eco ri complex at 2.50 a in the presence of mn2+ ion
  Author: monica horvath, jungwon choi, youngchang kim, patricia wilkosz, john m. rosenberg
  
  
• 1qp0.pdb. gene regulation/dna 01-jun-99 1qp0
  Title: purine repressor-hypoxanthine-palindromic operator complex
  Author: a. glasfeld, a. n. koehler, m. a. schumacher, r. g. brennan
  
  
• 1qpz.pdb. gene regulation/dna 01-jun-99 1qpz
  Title: purine repressor-hypoxanthine-palindromic operator complex
  Author: a. glasfeld, a. n. koehler, m. a. schumacher, r. g. brennan
  
  
• 1qp8.pdb. oxidoreductase 01-jun-99 1qp8
  Title: crystal structure of a putative formate dehydrogenase from pyrobaculum aerophilum
  Author: t. s. peat, j. newman, g. s. waldo, t. c. terwilliger
  
  
• 1qqw.pdb. oxidoreductase 09-jun-99 1qqw Fe
  Title: crystal structure of human erythrocyte catalase
  Author: t. p. ko, m. k. safo, f. n. musayev, c. wang, s. h. wu, d. j. abraham
  
  
• 1qqb.pdb. gene regulation/dna 01-jun-99 1qqb
  Title: purine repressor mutant-hypoxanthine-palindromic operator complex
  Author: a. glasfeld, a. n. koehler, m. a. schumacher, r. g. brennan
  
  
• 1qqa.pdb. gene regulation/dna 01-jun-99 1qqa
  Title: purine repressor mutant-hypoxanthine-palindromic operator complex
  Author: a. glasfeld, a. n. koehler, m. a. schumacher, r. g. brennan
  
  
• 1qqq.pdb. transferase 07-jun-99 1qqq
  Title: crystal structure analysis of ser254 mutant of escherichia coli thymidylate synthase
  Author: c. fantz, d. shaw, w. jennings, a. forsthoefel, m. kitchens, j. phan, w. minor, l. lebioda, g. f. berger, h. t. spencer
  
  
• 1qqz.pdb. fiber-forming protein 07-jun-99 1qqz (theoretical model)
  Title: vibrio cholerae toxin coregulated pilin model
  Author: r. chattopadhyaya, a. c. ghose
  
  
• 4thn.pdb. complex (serine protease/inhibitor) 18-sep-98 4thn
  Title: the crystal structure of alpha-thrombin-hirunorm iv complex reveals a novel specificity site recognition mode.
  Author: a. lombardi, g. de simone, f. nastri, s. galdiero, r. della morte, n. staiano, c. pedone, m. bolognesi, v. pavone
  
  
• 1ubn.pdb. hydrolase 02-jun-99 1ubn Ca
  Title: selenosubtilisin bpn
  Author: d. e. mcree, m. mctigue, d. hilvert
  
  
• 1ush.pdb. hydrolase 16-sep-98 1ush Zn
  Title: 5'-nucleotidase from e. coli
  Author: t. knofel, n. strater
  
  
• 2ush.pdb. hydrolase 24-sep-98 2ush Zn W
  Title: 5'-nucleotidase from e. coli
  Author: t. knofel, n. strater
  
  
• 1zzz.pdb. complex (serine protease/inhibitor) 02-jun-98 1zzz Ca
  Title: trypsin inhibitors with rigid tripeptidyl aldehydes
  Author: r. krishnan, e. zhang, k. hakansson, r. k. arni, a. tulinsky, m. s. l. lim-wilby, o. e. levy, j. e. semple, t. k. brunck