Recent PDB releases or updates: week of 9 June 1999

• 403d.pdb. deoxyribonucleic acid 10-jun-98 403d Mg
  Title: 5'-d(*cp*gp*cp*(hyd)ap*ap*ap*tp*tp*tp*gp*cp*g)-3', 2'-(4- ethoxyphenyl)-5-(4-methyl-1-piperazinyl)-2,5'-bi- benzimidazole
  Author: h. robinson, y. -g. gao, c. bauer, c. roberts, c. switzer, a. h. -j. wang
  
  
• 261l.pdb. hydrolase (o-glycosyl) 11-may-99 261l
  Title: structural characterisation of an engineered tandem repeat contrasts the importance of context and sequence in protein folding
  Author: m. sagermann, w. a. baase, b. w. matthews
  
  
• 262l.pdb. hydrolase (o-glycosyl) 11-may-99 262l
  Title: structural characterisation of an engineered tandem repeat contrasts the importance of context and sequence in protein folding
  Author: m. sagermann, w. a. baase, b. w. matthews
  
  
• 1a41.pdb. isomerase 10-feb-98 1a41
  Title: type 1-topoisomerase catalytic fragment from vaccinia virus
  Author: c. cheng, p. kussie, n. pavletich, s. shuman
  
  
• 1a79.pdb. endonuclease 23-mar-98 1a79 Au
  Title: crystal structure of the trna splicing endonuclease from methanococcus jannaschii
  Author: h. li, c. r. trotta, j. n. abelson
  
  
• 2arn.pdb. hydrocarbon receptor 19-may-99 2arn (theoretical model)
  Title: aryl hydrocarbon receptor nuclear translocator
  Author: j. l. pellequer, k. a. wager-smith, s. a. kay, e. d. getzoff
  
  
• 1b13.pdb. electron transport 26-nov-98 1b13 Fe
  Title: clostridium pasteurianum rubredoxin g10a mutant
  Author: m. j. maher, j. m. guss, m. c. j. wilce, a. g. wedd
  
  
• 1b2o.pdb. electron transport 30-nov-98 1b2o Fe
  Title: clostridium pasteurianum rubredoxin g10vg43a mutant
  Author: m. j. maher, j. m. guss, m. c. j. wilce, a. g. wedd
  
  
• 1b2j.pdb. electron transport 27-nov-98 1b2j Fe
  Title: clostridium pasteurianum rubredoxin g43a mutant
  Author: m. j. maher, j. m. guss, m. c. j. wilce, a. g. wedd
  
  
• 1b9w.pdb. msp-1 15-feb-99 1b9w
  Title: c-terminal merozoite surface protein 1 from plasmodium cynomolgi
  Author: g. a. bentley, v. chitarra, i. holm, s. longacre
  
  
• 1blx.pdb. complex (inhibitor protein/kinase) 21-jul-98 1blx Ca
  Title: p19ink4d/cdk6 complex
  Author: d. h. brotherton, v. dhanaraj, s. wick, l. brizuela, p. j. domaille, e. volyanik, x. xu, e. parisini, b. o. smith, s. j. archer, m. serrano, s. l. brenner, t. l. blundell, e. d. laue
  
  
• 1bzk.pdb. band 3 protein 01-nov-98 1bzk (NMR, 21 structures)
  Title: structural studies on the effects of the deletion in the red cell anion exchanger (band3, ae1) associated with south east asian ovalocytosis.
  Author: e. j. chambers, g. b. bloomberg, s. m. ring, m. j. a. tanner
  
  
• 1cej.pdb. surface protein 08-mar-99 1cej (NMR, 32 structures)
  Title: solution structure of an egf module pair from the plasmodium falciparum merozoite surface protein 1
  Author: w. d. morgan, b. birdsall, t. a. frenkiel, m. g. gradwell, p. a. burghaus, s. e. h. syed, c. uthaipibull, a. a. holder, j. feeney
  
  
• 1cfl.pdb. deoxyribonucleic acid 19-mar-99 1cfl (NMR, minimized average structure)
  Title: dna decamer duplex containing t5-t6 photoadduct
  Author: j. -h. lee, g. -s. hwang, b. -s. choi
  
  
• 1clu.pdb. hydrolase 03-may-99 1clu Mg
  Title: h-ras complexed with diaminobenzophenone-beta,gamma-imido- gtp
  Author: m. r. ahmadian, t. zor, d. vogt, w. kabsch, z. selinger, a. wittinghofer, k. scheffzek
  
  
• 1cnu.pdb. contractile 24-may-99 1cnu
  Title: phosphorylated actophorin from acantamoeba polyphaga
  Author: l. blanchoin, r. c. robinson, s. choe, t. d. pollard
  
  
• 1cnq.pdb. hydrolase 21-may-99 1cnq Zn
  Title: fructose-1,6-bisphosphatase complexed with fructose-6- phosphate and zinc ions
  Author: j. choe, b. w. poland, h. fromm, r. honzatko
  
  
• 1cnl.pdb. toxin 20-may-99 1cnl (NMR, 10 structures)
  Title: alpha-conotoxin imi
  Author: j. gehrmann, n. l. daly, d. j. craik
  
  
• 1cnm.pdb. hydrolase 20-may-99 1cnm Ca
  Title: enhancement of catalytic efficiency of proteinase k through exposure to anhydrous organic solvent at 70 degrees celsius
  Author: m. n. gupta, r. tyagi, s. sharma, s. karthikeyan, t. p. singh
  
  
• 1cnz.pdb. oxidoreductase 24-may-99 1cnz Mn
  Title: 3-isopropylmalate dehydrogenase (ipmdh) from salmonella typhimurium
  Author: g. wallon, g. kryger, s. t. lovett, t. oshima, d. ringe, g. a. petsko
  
  
• 2cua.pdb. electron transport 18-feb-99 2cua Cu Zn
  Title: the cua domain of cytochrome ba3 from thermus thermophilus
  Author: p. a. williams, n. j. blackburn, d. sanders, h. bellamy, e. a. stura, j. a. fee, d. e. mcree
  
  
• 1dgl.pdb. lectin 10-feb-98 1dgl Mn Ca
  Title: lectin from dioclea grandiflora complexed to trimannoside
  Author: d. a. rozwarski, b. m. swami, c. f. brewer, j. c. sacchettini
  
  
• 2dhq.pdb. dehydratase 29-jan-99 2dhq
  Title: 3-dehydroquinate dehydratase from mycobacterium tuberculosis
  Author: d. g. gourley, a. r. hawkins, j. r. coggins, n. w. isaacs
  
  
• 3fyg.pdb. transferase 07-aug-97 3fyg F
  Title: crystal structure of tetradeca-(3-fluorotyrosyl)- glutathione s-transferase
  Author: g. xiao, j. f. parsons, r. n. armstrong, g. l. gilliland
  
  
• 1kgg.pdb. hydrolase 20-may-99 1kgg
  Title: structure of beta-lactamase glu166gln:asn170asp mutant
  Author: c. c. h. chen, o. herzberg
  
  
• 1lz8.pdb. hydrolase 14-mar-99 1lz8 Cl Na
  Title: lysozyme phased on anomalous signal of sulfurs and chlorines
  Author: z. dauter, m. dauter, e. de la fortelle, g. bricogne, g. m. sheldrick
  
  
• 1lz9.pdb. hydrolase 15-mar-99 1lz9 Br Na
  Title: anomalous signal of solvent bromines used for phasing of lysozyme
  Author: z. dauter, m. dauter
  
  
• 1ngl.pdb. transport protein 23-feb-99 1ngl (NMR)
  Title: human neutrophil gelatinase-associated lipocalin (hngal), regularised average nmr structure
  Author: m. coles, t. diercks, b. muehlenweg, s. bartsch, v. zoelzer, h. tschesche, h. kessler
  
  
• 1p35.pdb. apoptosis 18-sep-98 1p35
  Title: crystal structure of baculovirus p35
  Author: a. j. fisher, w. p. delacruz, s. j. zoog, c. l. schneider, p. d. friesen
  
  
• 4prg.pdb. receptor 07-may-99 4prg
  Title: 0072 partial agonist ppar gamma cocrystal
  Author: m. v. milburn
  
  
• 3pyp.pdb. photoreceptor 28-jul-98 3pyp
  Title: photoactive yellow protein, cryotrapped early light cycle intermediate
  Author: u. k. genick, s. m. soltis, p. kuhn, i. l. canestrelli, e. d. getzoff
  
  
• 1qa6.pdb. protein/rna 15-apr-99 1qa6 Mg Os
  Title: crystal structure of a conserved ribosomal protein-rna complex
  Author: g. l. conn, d. e. draper, e. e. lattman, a. g. gittis
  
  
• 1qa4.pdb. viral protein 12-apr-99 1qa4 (NMR spectroscopy, 2 structures)
  Title: hiv-1 nef anchor domain, nmr, 2 structures
  Author: m. geyer, h. r. kalbitzer
  
  
• 1qa5.pdb. viral protein 12-apr-99 1qa5 (NMR spectroscopy, 2 structures)
  Title: myristoylated hiv-1 nef anchor domain, nmr, 2 structures
  Author: m. geyer, h. r. kalbitzer
  
  
• 1qbk.pdb. nuclear transport protein complex 23-apr-99 1qbk Mg
  Title: structure of the karyopherin beta2-ran gppnhp nuclear transport complex
  Author: y. m. chook, g. blobel
  
  
• 1qc6.pdb. cell motility 17-may-99 1qc6
  Title: evh1 domain from ena/vasp-like protein in complex with acta peptide
  Author: a. a. fedorov, e. v. fedorov, f. b. gertler, s. c. almo
  
  
• 1qc1.pdb. deoxyribonucleic acid 14-may-99 1qc1 Mg
  Title: crystal structure of the self-fitted b-dna decamer d(ccgccggcgg)
  Author: y. timsit, d. moras
  
  
• 1qdd.pdb. lithostathine 20-may-99 1qdd
  Title: crystal structure of human lithostathine to 1.3 a resolution
  Author: v. gerbaud, d. pignol, e. loret, j. a. beryrand, y. berland, j. c. fontecilla-camps, j. p. canselier, n. gabas, j. m. verdier
  
  
• 1qfj.pdb. oxidoreductase 12-apr-99 1qfj
  Title: crystal structure of nad(p)h:flavin oxidoreductase from escherichia coli
  Author: m. ingelman, s. ramaswamy, v. niviere, m. fontecave, h. eklund
  
  
• 1qph.pdb. deoxyribonucleic acid 25-may-99 1qph
  Title: crystal structure of the a-dna dodecamer gaccacgtggtc
  Author: h. raaijmakers, d. suck, c. mayer
  
  
• 1rvd.pdb. hydrolase 03-may-99 1rvd Mg
  Title: h-ras complexed with diaminobenzophenone-beta,gamma-imido- gtp
  Author: m. r. ahmadian, t. zor, d. vogt, w. kabsch, z. selinger, a. wittinghofer, k. scheffzek
  
  
• 1s9m.pdb. protein/dna 19-may-99 1s9m (theoretical model)
  Title: structural model of the p170r human sox9-dna complex
  Author: s. ranganathan, s. mcdowall, a. argentaro, p. weller, s. mertin, s. mansour, j. tolmie, v. harley
  
  
• 5ttr.pdb. transport 30-apr-98 5ttr
  Title: leu 55 pro transthyretin crystal structure
  Author: m. p. sebastiao, m. j. saraiva, a. m. damas
  
  
• 1wal.pdb. oxidoreductase 17-may-99 1wal
  Title: 3-isopropylmalate dehydrogenase (ipmdh) mutant (m219a)from thermus thermophilus
  Author: g. wallon, g. kryger, s. t. lovett, t. oshima, d. ringe, g. a. petsko
  
  
• 1a92.pdb. leucine zipper 15-apr-98 1a92
  Title: oligomerization domain of hepatitis delta antigen
  Author: h. j. zuccola, j. m. hogle
  
  
• 4ayk.pdb. matrix metalloproteinase 01-feb-99 4ayk Hg Ho Zn Ca (NMR)
  Title: catalytic fragment of human fibroblast collagenase complexed with cgs-27023a, nmr, 30 structures
  Author: r. powers, f. j. moy
  
  
• 3ayk.pdb. matrix metalloproteinase 01-feb-99 3ayk Hg Ho Zn Ca (NMR)
  Title: catalytic fragment of human fibroblast collagenase complexed with cgs-27023a, nmr, minimized average structure
  Author: r. powers, f. j. moy
  
  
• 1b63.pdb. dna mismatch repair 20-jan-99 1b63 Mg
  Title: mutl complexed with adpnp
  Author: w. yang
  
  
• 1b89.pdb. clathrin 27-may-99 1b89
  Title: clathrin heavy chain proximal leg segment (bovine)
  Author: j. a. ybe, f. m. brodsky, k. hofmann, k. lin, s. -h. liu, l. chen, t. n. earnest, r. j. fletterick, p. k. hwang
  
  
• 1bf6.pdb. phosphotriesterase 27-may-98 1bf6 Zn
  Title: phosphotriesterase homology protein from escherichia coli
  Author: j. l. buchbinder, r. c. stephenson, t. s. scanlan, r. j. fletterick
  
  
• 1bf4.pdb. complex (dna-binding protein/dna) 27-may-98 1bf4 I
  Title: sso7d-gcgaacgc complex
  Author: s. su, y. -g. gao, h. robinson, s. padmanabhan, l. lim, j. w. shriver, a. h. -j. wang
  
  
• 1bg3.pdb. hexokinase 04-jun-98 1bg3 Ca
  Title: rat brain hexokinase type i complex with glucose and inhibitor glucose-6-phosphate
  Author: a. m. mulichak, r. m. garavito
  
  
• 1bgq.pdb. chaperone 29-may-98 1bgq Cl
  Title: radicicol bound to the atp binding site of the n-terminal domain of the yeast hsp90 chaperone
  Author: s. m. roe, c. prodromou, l. h. pearl
  
  
• 1bgo.pdb. hydrolase 29-may-98 1bgo
  Title: crystal structure of cysteine protease human cathepsin k in complex with a covalent peptidomimetic inhibitor
  Author: r. l. desjarlais, d. s. yamashita, h. -j. oh, w. e. bondinell, i. n. uzinskas, k. f. erhard, a. c. allen, r. c. haltiwanger, b. zhao, w. w. smith, s. s. abdel-meguid, k. d'alessio, c. a. janson, m. s. mcqueney, t. a. tomaszek, m. a. levy, d. f. veber
  
  
• 1bvv.pdb. hydrolase 18-sep-98 1bvv F
  Title: sugar ring distortion in the glycosyl-enzyme intermediate of a family g/11 xylanase
  Author: g. sidhu, g. d. brayer
  
  
• 2bvv.pdb. hydrolase 17-nov-98 2bvv
  Title: sugar ring distortion in the glycosyl-enzyme intermediate of a family g/11 xylanase.
  Author: g. sidhu, g. d. brayer
  
  
• 1cc1.pdb. oxidoreductase 03-mar-99 1cc1 Fe Ni
  Title: crystal structure of a reduced, active form of the ni-fe-se hydrogenase from desulfomicrobium baculatum
  Author: e. garcin, x. vernede, e. c. hatchikian, a. volbeda, m. frey, j. c. fontecilla-camps
  
  
• 1cf5.pdb. ribosome-inactivating protein 24-mar-99 1cf5
  Title: beta-momorcharin structure at 2.55 a
  Author: y. -r. yuan, y. -n. he, j. -p. xiong, z. -x. xia
  
  
• 1cgq.pdb. protein hormone 25-mar-99 1cgq
  Title: macrophage migration inhibitory factor (mif) with alanine inserted between pro-1 and met-2
  Author: j. b. lubetsky, e. lolis
  
  
• 1dcs.pdb. oxidoreductase 05-jun-98 1dcs
  Title: deacetoxycephalosporin c synthase from s. clavuligerus
  Author: k. valegard, a. c. terwisscha van scheltinga, m. d. lloyd, t. hara, s. ramaswamy, a. perrakis, a. thompson, h. j. lee, j. e. baldwin, c. j. schofield, j. hajdu, i. andersson
  
  
• 1fpp.pdb. prenyltransferase 10-jul-98 1fpp Zn
  Title: protein farnesyltransferase complex with farnesyl diphosphate
  Author: p. dunten, u. kammlott, r. crowther, d. weber, r. palermo, j. birktoft
  
  
• 1fzf.pdb. blood coagulation 28-dec-98 1fzf Ca
  Title: crystal structure of fragment double-d from human fibrin with the peptide ligand gly-his-arg-pro-amide
  Author: s. j. everse, g. spraggon, l. veerapandian, r. f. doolittle
  
  
• 1fzg.pdb. blood coagulation 01-jan-99 1fzg Ca
  Title: crystal structure of fragment d from human fibrinogen with the peptide ligand gly-his-arg-pro-amide
  Author: s. j. everse, g. spraggon, l. veerapandian, r. f. doolittle
  
  
• 1fze.pdb. blood coagulation 23-dec-98 1fze Ca
  Title: crystal structure of fragment double-d from human fibrin
  Author: s. j. everse, g. spraggon, l. veerapandian, r. f. doolittle
  
  
• 2gaw.pdb. hydrolase 29-may-98 2gaw
  Title: wild type glycosylasparaginase from flavobacterium meningosepticum
  Author: h. -c. guo, q. xu
  
  
• 2gac.pdb. hydrolase 29-may-98 2gac
  Title: t152c mutant glycosylasparaginase from flavobacterium meningosepticum
  Author: h. -c. guo, q. xu
  
  
• 1gnf.pdb. transcription regulation 12-oct-98 1gnf Zn (NMR, 25 structures)
  Title: solution structure of the n-terminal zinc finger of murine gata-1, nmr, 25 structures
  Author: k. kowalski, r. czolij, g. f. king, m. crossley, j. p. mackay
  
  
• 1hka.pdb. transferase 29-sep-98 1hka
  Title: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase
  Author: b. xiao, g. shi, x. chen, h. yan, x. ji
  
  
• 1ibr.pdb. small gtpase 14-may-99 1ibr Mg
  Title: complex of ran with importin beta
  Author: i. r. vetter, a. arndt, u. kutay, d. goerlich, a. wittinghofer
  
  
• 2jcw.pdb. oxidoreductase 21-dec-98 2jcw Cu Zn
  Title: reduced bridge-broken yeast cu/zn superoxide dismutase room temperature (298k) structure
  Author: p. j. hart, m. m. balbirnie, n. l. ogihara, a. m. nersissian, m. s. weiss, j. s. valentine, d. eisenberg
  
  
• 1jen.pdb. s-adenosylmethionine decarboxylase 23-feb-99 1jen
  Title: human s-adenosylmethionine decarboxylase
  Author: j. l. ekstrom, i. i. mathews, b. a. stanley, a. e. pegg, s. e. ealick
  
  
• 1jnk.pdb. transferase 03-jun-98 1jnk Mg
  Title: the c-jun n-terminal kinase (jnk3s) complexed with mgamp-pnp
  Author: x. xie, m. s. -s. su
  
  
• 7mdh.pdb. chloroplastic malate dehydrogenase 16-feb-99 7mdh Zn
  Title: structural basis for light acitvation of a chloroplast enzyme. the structure of sorghum nadp-malate dehydrogenase in its oxidized form
  Author: k. johansson, s. ramaswamy, m. saarinen, m. lemaire-chamley, e. issakidis-bourguet, m. miginiac-maslow, h. eklund
  
  
• 1mnl.pdb. sweet protein 06-aug-98 1mnl (NMR, 21 structures)
  Title: high-resolution solution structure of a sweet protein single-chain monellin (scm) determined by nuclear magnetic resonance spectroscopy and dynamical simulated annealing calculations, 21 structures
  Author: s. -y. lee, j. -h. lee, h. -j. chang, j. -m. jo, j. -w. jung, w. lee
  
  
• 1ntc.pdb. nitrogen regulation protein 26-may-99 1ntc (NMR)
  Title: solution structure of the dna-binding domain of ntrc with three alanine substitutions
  Author: j. g. pelton, s. kustu, d. e. wemmer
  
  
• 1nt3.pdb. neurotrophin 17-may-99 1nt3
  Title: human neurotrophin-3
  Author: m. j. butte, p. k. hwang, w. c. mobley, r. j. fletterick
  
  
• 1p1g.pdb. protein hormone 24-mar-99 1p1g
  Title: macrophage migration inhibitory factor (mif) with pro-1 mutated to gly-1
  Author: j. b. lubetsky, e. lolis
  
  
• 1pjb.pdb. oxidoreductase 05-jun-98 1pjb
  Title: l-alanine dehydrogenase
  Author: p. j. baker, y. sawa, h. shibata, s. e. sedelnikova, d. w. rice
  
  
• 1pme.pdb. transferase 08-jun-98 1pme F
  Title: structure of penta mutant human erk2 map kinase complexed with a specific inhibitor of human p38 map kinase
  Author: x. xie
  
  
• 1qpw.pdb. oxygen transport 30-may-99 1qpw Fe
  Title: crystal structure determination of porcine hemoglobin at 1.8a resolution
  Author: t. -h. lu, k. panneerselvam, y. -c. liaw, p. kan, c. -j. lee
  
  
• 1qpu.pdb. electron transport 30-may-99 1qpu Fe (NMR)
  Title: solution structure of oxidized escherichia coli cytochrome b562
  Author: f. arnesano, l. banci, i. bertini, j. faraone-mennella, a. rosato, p. d. barker, a. r. fersht
  
  
• 1qpm.pdb. viral protein 26-may-99 1qpm (NMR)
  Title: nmr structure of the mu bacteriophage repressor dna-binding domain
  Author: u. ilangovan, j. m. wojciak, k. m. connolly, r. t. clubb
  
  
• 1rxf.pdb. oxidoreductase 05-jun-98 1rxf Fe
  Title: deacetoxycephalosporin c synthase complexed with fe(ii)
  Author: k. valegard, a. c. terwisscha van scheltinga, m. d. lloyd, t. hara, s. ramaswamy, a. perrakis, a. thompson, h. j. lee, j. e. baldwin, c. j. schofield, j. hajdu, i. andersson
  
  
• 1rxg.pdb. oxidoreductase 05-jun-98 1rxg Fe
  Title: deacetoxycephalosporin c synthase complexed with fe(ii) and 2-oxoglutarate
  Author: k. valegard, a. c. terwisscha van scheltinga, m. d. lloyd, t. hara, s. ramaswamy, a. perrakis, a. thompson, h. j. lee, j. e. baldwin, c. j. shofield, j. hajdu, i. andersson
  
  
• 1say.pdb. oxidoreductase 05-jun-98 1say
  Title: l-alanine dehydrogenase complexed with pyruvate
  Author: p. j. baker, y. sawa, h. shibata, s. e. sedelnikova, d. w. rice
  
  
• 1tki.pdb. serine kinase 29-may-98 1tki
  Title: autoinhibited serine kinase domain of the giant muscle protein titin
  Author: m. o. mayans, m. gautel, m. wilmanns
  
  
• 1wct.pdb. gamma-carboxy glutamic acid 18-dec-98 1wct Br (NMR, 1 structure)
  Title: a novel conotoxin from conus textile with unusual post-translational modifications reduces presynaptic calcium influx, nmr, 1 structure, glycosylated protein
  Author: a. c. rigby, b. hambe, e. czerwiec, j. d. baleja, b. c. furie, b. furie, j. stenflo
  
  
• 1yyy.pdb. complex (serine protease/inhibitor) 03-jun-98 1yyy Ca
  Title: trypsin inhibitors with rigid tripeptidyl aldehydes
  Author: r. krishnan, e. zhang, k. hakansson, r. k. arni, a. tulinsky, m. s. l. lim-wilby, o. e. levy, j. e. semple, t. k. brunck
  
  
• 4znb.pdb. hydrolase 20-oct-98 4znb Zn Na
  Title: metallo-beta-lactamase (c181s mutant)
  Author: z. li, o. herzberg