Recent PDB releases or updates: week of 19 May 1999

• 438d.pdb. ribonucleic acid 28-dec-98 438d
  Title: structure of an rna duplex r(gggcgcucc)2 with non-adjacent g.u base pairs
  Author: k. shi, m. c. wahl, m. sundaralingam
  
  
• 468d.pdb. ribonucleic acid 29-apr-99 468d Mg
  Title: crystal structure and improved antisense properties of 2'-o- (2-methoxyethyl)-rna
  Author: m. teplova, g. minasov, v. tereshko, g. inamati, p. d. cook, m. egli
  
  
• 469d.pdb. ribonucleic acid 29-apr-99 469d Mg
  Title: crystal structure and improved antisense properties of 2'-o- (2-methoxyethyl)-rna
  Author: m. teplova, g. minasov, v. tereshko, g. inamati, p. d. cook, m. egli
  
  
• 470d.pdb. ribonucleic acid 29-apr-99 470d Mg
  Title: crystal structure and improved antisense properties of 2'-o- (2-methoxyethyl)-rna
  Author: m. teplova, g. minasov, v. tereshko, g. inamati, p. d. cook, m. egli
  
  
• 471d.pdb. ribonucleic acid 29-apr-99 471d Mg
  Title: crystal structure and improved antisense properties of 2'-o- (2-methoxyethyl)-rna
  Author: m. teplova, g. minasov, v. tereshko, g. inamati, p. d. cook, m. egli
  
  
• 2axe.pdb. hydrolase 01-sep-98 2axe I
  Title: iodinated complex of acetyl xylan esterase at 1.80 angstroms
  Author: d. ghosh, m. erman, m. w. sawicki, p. lala, d. r. weeks, n. li, w. pangborn, d. j. thiel, h. jornvall, j. eyzaguirre
  
  
• 1aze.pdb. complex (adaptor protein/peptide) 17-nov-97 1aze (NMR, 10 structures)
  Title: nmr structure of the complex between the c32s-y7v mutant of the nsh3 domain of grb2 with a peptide from sos, 10 structures
  Author: m. vidal, e. gincel, n. goudreau, f. cornille, f. parker, m. duchesne, b. tocque, c. garbay, b. p. roques
  
  
• 1b4n.pdb. oxidoreductase 24-dec-98 1b4n Mg W Fe Ca
  Title: formaldehyde ferredoxin oxidoreductase from pyrococcus furiosus, complexed with glutarate
  Author: y. l. hu, s. faham, r. roy, m. w. w. adams, d. c. rees
  
  
• 1b5l.pdb. cytokine 07-jan-99 1b5l
  Title: ovine interferon tau
  Author: r. radhakrishnan, l. j. walter, p. s. subramaniam, h. j. johnson, m. r. walter
  
  
• 1b64.pdb. guanine nucleotide exchange factor 20-jan-99 1b64 (NMR, 20 structures)
  Title: solution structure of the guanine nucleotide exchange factor domain from human elongation factor-one beta, nmr, 20 structures
  Author: j. m. j. perez, g. siegal, j. kriek, k. hard, j. dijk, g. w. canters, w. moller
  
  
• 1b7t.pdb. myosin 15-jan-99 1b7t Mg Ca
  Title: myosin digested by papain
  Author: a. houdusse, v. kalabokis, d. himmel, a. g. szent-gyorgyi, c. cohen
  
  
• 1b9r.pdb. ferredoxin 15-feb-99 1b9r Fe (NMR)
  Title: terpredoxin from pseudomonas sp.
  Author: h. mo, s. s. pochapsky, t. c. pochapsky
  
  
• 1bd4.pdb. transferase 12-may-98 1bd4
  Title: uprt-uracil complex
  Author: m. a. schumacher, d. carter, d. scott, d. roos, b. ullman, r. g. brennan
  
  
• 1bd3.pdb. transferase 12-may-98 1bd3
  Title: structure of the apo uracil phosphoribosyltransferase,2 mutant c128v
  Author: m. a. schumacher, d. carter, d. scott, d. roos, b. ullman, r. g. brennan
  
  
• 1bef.pdb. protease 14-may-98 1bef
  Title: crystal structure of dengue virus ns3 serine protease
  Author: h. m. k. murthy, s. clum, r. padmanabhan
  
  
• 1bqg.pdb. glucarate 15-aug-98 1bqg
  Title: the structure of the d-glucarate dehydratase protein from pseudomonas putida
  Author: a. m. gulick, d. r. j. palmer, p. c. babbitt, j. a. gerlt, i. rayment
  
  
• 1bqw.pdb. polyvalent peroxidase 19-aug-98 1bqw (theoretical model)
  Title: molecular model of a polyvalent peroxidase isolated from partially-delignified lignocellulose which includes both mnp and lip-type binding sites, theoretical model
  Author: a. t. martinez, s. sarkar, f. j. ruiz-duenas, s. camarero, m. j. martinez
  
  
• 1bqt.pdb. growth factor 18-aug-98 1bqt (NMR, 6 structures)
  Title: three-dimensional structure of human insulin-like growth factor-i (igf-i) determined by 1h-nmr and distance geometry, 6 structures
  Author: a. sato, s. nishimura, t. ohkubo, y. kyogoku, s. koyama, m. kobayashi, t. yasuda, y. kobayashi
  
  
• 1bq1.pdb. transferase 20-aug-98 1bq1
  Title: e. coli thymidylate synthase mutant n177a in complex with cb3717 and 2'-deoxyuridine 5'-monophosphate (dump)
  Author: c. l. reyes, c. r. sage, e. e. rutenber, j. s. finer-moore, r. m. stroud
  
  
• 1bsi.pdb. hydrolase 28-aug-98 1bsi Cl Ca
  Title: human pancreatic alpha-amylase from pichia pastoris, glycosylated protein
  Author: e. h. rydberg, g. sidhu, h. c. vo, j. hewitt, h. c. f. cote, y. wang, s. numao, r. t. a. macgillivray, c. m. overall, g. d. brayer, s. g. withers
  
  
• 1bs9.pdb. serine hydrolase 01-sep-98 1bs9
  Title: acetylxylan esterase from p. purpurogenum refined at 1.10 angstroms
  Author: d. ghosh, m. erman, m. w. sawicki, p. lala, d. r. weeks, n. li, w. pangborn, d. j. thiel, h. jornvall, j. eyzaguirre
  
  
• 1but.pdb. deoxyribonucleic acid 04-sep-98 1but (NMR, 10 structures)
  Title: nmr structure of the dna decamer d(catggccatg)2, 10 structures
  Author: u. dornberger, j. flemming, h. fritzsche
  
  
• 1bvb.pdb. electron transport 16-sep-98 1bvb Fe
  Title: heme-packing motifs revealed by the crystal structure of cytochrome c554 from nitrosomonas europaea
  Author: t. m. iverson, d. m. arciero, b. t. hsu, m. s. p. logan, a. b. hooper, d. c. rees
  
  
• 1bv2.pdb. lipid-binding protein 21-sep-98 1bv2 (NMR, 14 structures)
  Title: lipid transfer protein from rice seeds, nmr, 14 structures
  Author: j. poznanski, p. sodano, s. w. suh, j. y. lee, m. ptak, f. vovelle
  
  
• 1bwf.pdb. transferase 23-sep-98 1bwf Mg F
  Title: escherichia coli glycerol kinase mutant with bound atp analog showing substantial domain motion
  Author: c. e. bystrom, d. w. pettigrew, b. p. branchaud, s. j. remington
  
  
• 1bwr.pdb. hydrolase 27-sep-98 1bwr
  Title: probing the substrate specificity of the intracellular brain platelet-activating factor acetylhydrolase
  Author: y. s. ho, p. j. sheffield, j. masuyama, h. arai, j. li, j. aoki, k. inoue, u. derewenda, z. derewenda
  
  
• 1bwp.pdb. hydrolase 27-sep-98 1bwp
  Title: probing the substrate specificity of the intracellular brain platelet-activating factor acetylhydrolase
  Author: y. s. ho, p. j. sheffield, j. masuyama, h. arai, j. li, j. aoki, k. inoue, u. derewenda, z. derewenda
  
  
• 1bwq.pdb. hydrolase 27-sep-98 1bwq
  Title: probing the substrate specificity of the intracellular brain platelet-activating factor acetylhydrolase
  Author: y. s. ho, p. j. sheffield, j. masuyama, h. arai, j. li, j. aoki, k. inoue, u. derewenda, z. derewenda
  
  
• 1bw9.pdb. amino acid dehydrogenase 01-oct-98 1bw9 K Na
  Title: phenylalanine dehydrogenase structure in ternary complex with nad+ and phenylpyruvate
  Author: j. l. vanhooke, j. b. thoden, n. m. w. brunhuber, j. l. blanchard, h. m. holden
  
  
• 1bxg.pdb. amino acid dehydrogenase 02-oct-98 1bxg K
  Title: phenylalanine dehydrogenase structure in ternary complex with nad+ and beta-phenylpropionate
  Author: j. l. vanhooke, j. b. thoden, n. m. w. brunhuber, j. l. blanchard, h. m. holden
  
  
• 1by2.pdb. extracellular module 23-oct-98 1by2
  Title: structure of m2bp scavenger receptor cysteine-rich domain
  Author: e. hohenester, t. sasaki, r. timpl
  
  
• 1bzf.pdb. oxidoreductase 28-oct-98 1bzf (NMR, 22 structures)
  Title: nmr solution structure and dynamics of the complex of lactobacillus casei dihydrofolate reductase with the new lipophilic antifolate drug trimetrexate, 22 structures
  Author: v. i. polshakov, b. birdsall, t. a. frenkiel, a. r. gargaro, j. feeney
  
  
• 1bzv.pdb. hormone 04-nov-98 1bzv (NMR, minimized average structure)
  Title: [d-alab26]-des(b27-b30)-insulin-b26-amide a superpotent single-replacement insulin analogue, nmr, minimized average structure
  Author: g. kurapkat, m. siedentopf, h. g. gattner, m. hagelstein, d. brandenburg, j. grotzinger, a. wollmer
  
  
• 1bzg.pdb. hormone 28-oct-98 1bzg (NMR, 30 structures)
  Title: the solution structure of human parathyroid hormone-related protein (1-34) in near-physiological solution, nmr, 30 structures
  Author: m. weidler, u. c. marx, g. seidel, p. roesch
  
  
• 2cbl.pdb. complex (proto-oncogene/peptide) 28-aug-98 2cbl Ca
  Title: n-terminal domain of cbl in complex with its binding site on zap-70
  Author: w. meng, s. sawasdikosol, s. j. burakoff, m. j. eck
  
  
• 1cb8.pdb. lyase 02-mar-99 1cb8 Ca
  Title: chondroitinase ac lyase from flavobacterium heparinum
  Author: j. fethiere, b. eggimann, m. cygler
  
  
• 1cku.pdb. electron transfer protein 24-apr-99 1cku Fe
  Title: ab initio solution and refinement of two high potential iron protein structures at atomic resolution
  Author: e. parisini, f. capozzi, p. lubini, v. lamzin, c. luchinat, g. m. sheldrick
  
  
• 1cl4.pdb. viral protein 06-may-99 1cl4 Zn (NMR, 12 structures)
  Title: nucleocapsid protein from mason-pfizer monkey virus (mpmv)
  Author: y. gao, k. kaluarachchi, d. p. giedroc
  
  
• 1cl5.pdb. hydrolase 06-may-99 1cl5
  Title: crystal structure of phospholipase a2 from daboia russelli pulchella
  Author: v. chandra, p. kaur, t. p. singh
  
  
• 1cpz.pdb. copper chaperone 06-may-99 1cpz (NMR, 20 structures)
  Title: copper chaperone of enterococcus hirae (apo-form)
  Author: r. wimmer, t. herrmann, m. solioz, k. wuethrich
  
  
• 3csu.pdb. transferase (carbamoyl-p, aspartate) 22-apr-99 3csu Ca
  Title: catalytic trimer of escherichia coli aspartate transcarbamoylase
  Author: p. t. beernink, j. a. endrizzi, t. alber, h. k. schachman
  
  
• 2ebo.pdb. envelope glycoprotein 24-dec-98 2ebo Cl
  Title: core structure of gp2 from ebola virus
  Author: v. n. malashkevich, b. j. schneider, p. s. kim
  
  
• 1emg.pdb. greenfluorescent protein 12-nov-98 1emg
  Title: green fluorescent protein (65-67 replaced by cro, s65t substitution, q80r)
  Author: m. a. elsliger, r. m. wachter, k. kallio, g. t. hanson, s. j. remington
  
  
• 2fap.pdb. complex (isomerase/kinase) 22-sep-98 2fap
  Title: the structure of the immunophilin-immunosuppressant fkbp12-rapamycin complex interacting with human frap
  Author: j. liang, j. choi, j. clardy
  
  
• 1gll.pdb. phosphotransferase 24-sep-98 1gll Mg
  Title: escherichia coli glycerol kinase mutant with bound atp analog showing substantial domain motion
  Author: c. e. bystrom, d. w. pettigrew, b. p. branchaud, s. j. remington
  
  
• 1glj.pdb. phosphotransferase 03-sep-98 1glj Mg As
  Title: escherichia coli glycerol kinase mutant with bound atp analog showing substantial domain motion
  Author: c. e. bystrom, d. w. pettigrew, b. p. branchaud, s. j. remington
  
  
• 2hap.pdb. complex (transcription factor/dna) 17-sep-98 2hap Zn
  Title: structure of a hap1-18/dna complex reveals that protein/dna interactions can have direct allosteric effects on transcriptional activation
  Author: d. a. king, l. zhang, l. guarente, r. marmorstein
  
  
• 2hdh.pdb. oxidoreductase 04-dec-98 2hdh
  Title: biochemical characterization and structure determination of human heart short chain l-3-hydroxyacyl coa dehydrogenase provide insight into catalytic mechanism
  Author: j. j. barycki, j. m. bratt, l. j. banaszak
  
  
• 1hwt.pdb. complex (activator/dna) 17-sep-98 1hwt Zn
  Title: structure of a hap1/dna complex reveals dramatically asymmetric dna binding by a homodimeric protein
  Author: d. a. king, l. zhang, l. guarente, r. marmorstein
  
  
• 2if1.pdb. translation initiation factor 04-aug-98 2if1 (NMR, 29 structures)
  Title: human translation initiation factor eif1, nmr, 29 structures
  Author: c. m. fletcher, c. u. t. hellen, t. v. pestova, g. wagner
  
  
• 4kiv.pdb. lysine binding site 26-aug-98 4kiv
  Title: recombinant kringle iv-10/w72r mutant of human apolipoprotein(a)
  Author: i. mochalkin, a. tulinsky, a. scanu
  
  
• 1kiv.pdb. kringle 26-aug-98 1kiv
  Title: recombinant kringle iv-10/m66 variant of human apolipoprotein(a)
  Author: i. mochalkin, a. tulinsky, a. scanu
  
  
• 3kiv.pdb. kringle 08-sep-98 3kiv
  Title: recombinant kringle iv-10/m66 variant of human apolipoprotein(a)
  Author: i. mochalkin, a. tulinsky, a. scanu
  
  
• 1ki3.pdb. phosphotransferase 15-may-98 1ki3
  Title: crystal structure of thymidine kinase from herpes simplex virus type i complexed with penciclovir
  Author: j. n. champness, m. s. bennett, f. wien, r. visse, r. l. jarvest, w. c. summers, m. r. sanderson
  
  
• 4lve.pdb. immunoglobulin 12-may-98 4lve
  Title: len k30t mutant: a domain flip as a result of a single amino acid substitution
  Author: m. schiffer, p. r. pokkuluri
  
  
• 2lve.pdb. immunoglobulin 13-may-98 2lve
  Title: recombinant len
  Author: m. schiffer, p. r. pokkuluri
  
  
• 3lve.pdb. immunoglobulin 12-may-98 3lve Zn
  Title: len q38e mutant: a domain flip from a single amino acid substitution
  Author: m. schiffer, p. r. pokkuluri
  
  
• 5mdh.pdb. oxidoreductase 08-oct-98 5mdh
  Title: crystal structure of ternary complex of porcine cytoplasmic malate dehydrogenase alpha-ketomalonate and tnad at 2.4 angstroms resolution
  Author: a. d. m. chapman, a. cortes, t. r. dafforn, a. r. clarke, r. l. brady
  
  
• 1mpy.pdb. oxidoreductase 20-oct-98 1mpy Fe
  Title: structure of catechol 2,3-dioxygenase (metapyrocatechase) from pseudomonas putida mt-2
  Author: a. kita, s. kita, i. fujisawa, k. inaka, t. ishida, k. horiike, m. nozaki, k. miki
  
  
• 4nse.pdb. complex (oxidoreductase/peptide) 07-oct-98 4nse Zn Fe As
  Title: bovine endothelial nitric oxide synthase, h4b-free, l-arg complex
  Author: c. s. raman, h. li, p. martasek, v. kral, b. s. s. masters, t. l. poulos
  
  
• 1nse.pdb. oxidoreductase 14-may-98 1nse Zn Fe As
  Title: bovine endothelial nitric oxide synthase
  Author: c. s. raman, h. li, p. martasek, v. kral, b. s. s. masters, t. l. poulos
  
  
• 3nse.pdb. complex (oxidoreductase/peptide) 23-sep-98 3nse Zn Fe As
  Title: bovine enos, h4b-free, seitu complex
  Author: c. s. raman, h. li, p. martasek, v. kral, b. s. s. masters, t. l. poulos
  
  
• 1oce.pdb. hydrolase 12-jun-98 1oce
  Title: acetylcholinesterase (e.c. 3.1.1.7) complexed with mf268
  Author: c. bartolucci, e. perola, l. cellai, m. brufani, d. lamba
  
  
• 1pdx.pdb. electron transfer 15-feb-99 1pdx Fe (NMR)
  Title: putidaredoxin
  Author: t. c. pochapsky, n. u. jain, m. kuti, t. a. lyons, j. heymont
  
  
• 4pro.pdb. serine protease 01-oct-98 4pro
  Title: alpha-lytic protease complexed with pro region
  Author: n. k. sauter, t. mau, s. d. rader, d. a. agard
  
  
• 1qcl.pdb. nervous system 07-may-99 1qcl (theoretical model)
  Title: predicted structure of human myelin basic protein.
  Author: r. a. ridsdale, d. r. beniac, t. a. tompkins, m. a. moscarello, g. harauz
  
  
• 1qfs.pdb. hydrolase 13-apr-99 1qfs
  Title: prolyl oligopeptidase from porcine muscle with covalently bound inhibitor z-pro-prolinal
  Author: v. fulop
  
  
• 1qfm.pdb. hydrolase 12-apr-99 1qfm
  Title: prolyl oligopeptidase from porcine muscle
  Author: v. fulop
  
  
• 1rdv.pdb. electron transfer 30-sep-98 1rdv Fe
  Title: rubredoxin from desulfovibrio vulgaris miyazaki f, trigonal crystal form
  Author: y. higuchi, n. yasuoka
  
  
• 2rdv.pdb. electron transfer 07-oct-98 2rdv Fe
  Title: rubredoxin from desulfovibrio vulgaris miyazaki f, monoclinic crystal form
  Author: y. higuchi, n. yasuoka
  
  
• 1rrp.pdb. complex (small gtpase/nuclear protein) 15-jan-99 1rrp Mg
  Title: structure of the ran-gppnhp-ranbd1 complex
  Author: i. r. vetter, c. nowak, t. nishimoto, j. kuhlmann, a. wittinghofer
  
  
• 3sqc.pdb. isomerase 04-sep-98 3sqc
  Title: squalene-hopene cyclase
  Author: k. u. wendt, g. e. schulz