Recent PDB releases or updates: week of 12 May 1999

• 2a3d.pdb. three-helix bundle 01-apr-99 2a3d (NMR, 1 structures)
  Title: solution structure of a de novo designed single chain three- helix bundle (a3d)
  Author: s. t. r. walsh, h. cheng, j. w. bryson, h. roder, w. f. degrado
  
  
• 1a8r.pdb. hydrolase 27-mar-98 1a8r
  Title: gtp cyclohydrolase i (h112s mutant) in complex with gtp
  Author: g. auerbach, h. nar, a. bracher, a. bacher, r. huber
  
  
• 1a82.pdb. biotin biosynthesis 31-mar-98 1a82 Mg
  Title: dethiobiotin synthetase from escherichia coli, complex with substrates atp and diaminopelargonic acid
  Author: h. kaeck, k. j. gibson, y. lindqvist, g. schneider
  
  
• 1a9c.pdb. hydrolase 04-apr-98 1a9c
  Title: gtp cyclohydrolase i (c110s mutant) in complex with gtp
  Author: g. auerbach, h. nar, a. bracher, a. bacher, r. huber
  
  
• 1axk.pdb. fusion protein 16-oct-97 1axk Ca
  Title: engineered bacillus bifunctional enzyme gluxyn-1
  Author: j. ay, u. heinemann
  
  
• 1b8f.pdb. lyase 31-jan-99 1b8f
  Title: histidine ammonia-lyase (hal) from pseudomonas putida
  Author: t. f. schwede, g. e. schulz
  
  
• 1b8t.pdb. contractile 02-feb-99 1b8t Zn (NMR)
  Title: solution structure of the chicken crp1
  Author: x. yao, g. c. perez-alvarado, h. a. louis, p. pomies, c. hatt, m. f. summers, m. c. beckerle
  
  
• 1bc9.pdb. exchange factor 06-may-98 1bc9 (NMR, minimized average structure)
  Title: cytohesin-1/b2-1 sec7 domain, nmr, minimized average structure
  Author: s. f. betz, a. schnuchel, h. wang, e. t. olejniczak, r. p. meadows, s. w. fesik
  
  
• 1bdf.pdb. nucleotidyltransferase 08-may-98 1bdf
  Title: structure of escherichia coli rna polymerase alpha subunit n-terminal domain
  Author: g. zhang, s. a. darst
  
  
• 1bdg.pdb. hexokinase 08-may-98 1bdg
  Title: hexokinase from schistosoma mansoni complexed with glucose
  Author: a. m. mulichak, r. m. garavito
  
  
• 1bda.pdb. complex (serine protease/inhibitor) 07-may-98 1bda
  Title: catalytic domain of human single chain tissue plasminogen activator in complex with dansyl-egr-cmk (dansyl-glu-gly-arg chloromethyl ketone)
  Author: w. bode, m. renatus, r. a. engh
  
  
• 1bdj.pdb. complex (chemotaxis/transferase) 10-may-98 1bdj
  Title: complex structure of hpt domain and chey
  Author: m. kato, t. mizuno, t. shimizu, t. hakoshima
  
  
• 1bdx.pdb. complex (dna-binding protein/dna) 11-may-98 1bdx
  Title: e. coli ruva with bound dna holliday junction, alpha carbons and phosphate atoms only
  Author: d. hargreaves, d. w. rice, s. e. sedelnikova, p. j. artymiuk, r. g. lloyd, j. b. rafferty
  
  
• 1bj7.pdb. allergen 02-jul-98 1bj7
  Title: bovine lipocalin allergen bos d 2
  Author: j. rouvinen
  
  
• 1bkn.pdb. dna repair 09-jul-98 1bkn
  Title: crystal structure of an n-terminal 40kd fragment of e. coli dna mismatch repair protein mutl
  Author: w. yang, c. ban
  
  
• 1bqd.pdb. aminotransferase 14-aug-98 1bqd
  Title: aspartate aminotransferase p138a/p195a double mutant
  Author: v. n. malashkevich, j. n. jansonius
  
  
• 1bqa.pdb. aminotransferase 13-aug-98 1bqa
  Title: aspartate aminotransferase p195a mutant
  Author: v. n. malashkevich, j. n. jansonius
  
  
• 1bzr.pdb. oxygen storage 03-nov-98 1bzr Fe
  Title: atomic resolution crystal structure analysis of native deoxy and co myoglobin from sperm whale at room temperature
  Author: g. s. kachalova, a. n. popov, h. d. bartunik
  
  
• 1bzp.pdb. oxygen storage 02-nov-98 1bzp Fe
  Title: atomic resolution crystal structure analysis of native deoxy and co myoglobin from sperm whale at room temperature
  Author: g. s. kachalova, a. n. popov, h. d. bartunik
  
  
• 1cbf.pdb. methyltransferase 01-may-98 1cbf
  Title: the x-ray structure of a cobalamin biosynthetic enzyme, cobalt precorrin-4 methyltransferase, cbif
  Author: h. l. schubert, e. raux, s. c. woodcock, k. s. wilson, m. j. warren
  
  
• 2cbf.pdb. methyltransferase 01-may-98 2cbf
  Title: the x-ray structure of a cobalamin biosynthetic enzyme, cobalt precorrin-4 methyltransferase, cbif, from bacillus megaterium, with the his-tag cleaved off
  Author: h. l. schubert, e. raux, s. c. woodcock, m. j. warren, k. s. wilson
  
  
• 1cjw.pdb. transferase 19-apr-99 1cjw Ne Cd Ce
  Title: serotonin n-acetyltranferase complexed with a bisubstrate analog
  Author: a. b. hickman, m. a. a. namboodiri, d. c. klein, f. dyda
  
  
• 1cjr.pdb. ribonuclease s 19-apr-99 1cjr
  Title: x-ray crystallographic studies of denaturation in ribonuclease s
  Author: g. s. ratnaparkhi, r. varadarajan
  
  
• 1cj0.pdb. transferase 20-apr-99 1cj0
  Title: crystal structure of rabbit cytosolic serine hydroxymethyltransferase at 2.8 angstrom resolution
  Author: j. n. scarsdale, g. kazanina, s. radaev, v. schirch, h. t. wright
  
  
• 1cjq.pdb. ribonuclease s 19-apr-99 1cjq
  Title: x-ray crystallographic studies of the denaturation of the denaturation of ribonuclease s.
  Author: g. s. ratnaparkhi, r. varadarajan
  
  
• 1ckg.pdb. hydrolase 22-apr-99 1ckg
  Title: t52v mutant human lysozyme
  Author: k. takano, y. yamagata, j. funahashi, k. yutani
  
  
• 1ckw.pdb. chloride channel 26-apr-99 1ckw (NMR, 13 structures)
  Title: cystic fibrosis transmembrane conductance regulator: solution structures of peptides based on the phe508 region, the most common site of disease-causing delta-f508 mutation
  Author: m. a. massiah, y. h. ko, p. l. pedersen, a. s. mildvan
  
  
• 1ckz.pdb. chloride channel 26-apr-99 1ckz (NMR, 13 structures)
  Title: cystic fibrosis transmembrane conductance regulator: solution structures of peptides based on the phe508 region, the most common site of disease-causing delta-f508 mutation
  Author: m. a. massiah, y. h. ko, p. l. pedersen, a. s. mildvan
  
  
• 1ckx.pdb. chloride channel 26-apr-99 1ckx (NMR, 13 structures)
  Title: cystic fibrosis transmembrane conductance regulator: solution structures of peptides based on the phe508 region, the most common site of disease-causing delta-f508 mutation
  Author: m. a. massiah, y. h. ko, p. l. pedersen, a. s. mildvan
  
  
• 1cky.pdb. chloride channel 26-apr-99 1cky (NMR, 10 structures)
  Title: cystic fibrosis transmembrane conductance regulator: solution structures of peptides based on the phe508 region, the most common site of disease-causing delta-f508 mutation
  Author: m. a. massiah, y. h. ko, p. l. pedersen, a. s. mildvan
  
  
• 2ezn.pdb. hiv-inactivating protein 06-may-98 2ezn (NMR, 40 structures)
  Title: solution nmr structure of cyanovirin-n ensemble of 40 simulated annealing structures
  Author: c. a. bewley, a. m. gronenborn, g. m. clore
  
  
• 2ezm.pdb. hiv-inactivating protein 06-may-98 2ezm (NMR, restrained regularized mean structure)
  Title: solution nmr structure of cyanovirin-n, restrained regularized mean coordinates
  Author: c. a. bewley, a. m. gronenborn, g. m. clore
  
  
• 1gpe.pdb. oxidoreductase(flavoprotein) 24-mar-99 1gpe
  Title: glucose oxidase from penicillium amagasakiense
  Author: j. hendle, h. m. kalisz, h. j. hecht
  
  
• 7hsc.pdb. molecular chaperone 03-may-99 7hsc (NMR, minimized average structure)
  Title: high resolution solution structure of the heat shock cognate-70 kd substrate binding domain obtained by multidimensional nmr techniques
  Author: r. c. morshauser, w. hu, h. wang, y. pang, g. c. flynn, e. r. p. zuiderweg
  
  
• 1kdj.pdb. electron transfer 08-may-98 1kdj Cu
  Title: oxidized form of plastocyanin from dryopteris crassirhizoma
  Author: t. inoue, m. gotowda, k. hamada, t. kohzuma, f. yoshizaki, y. sugimura, y. kai
  
  
• 1kdi.pdb. electron transfer 08-may-98 1kdi Cu
  Title: reduced form of plastocyanin from dryopteris crassirhizoma
  Author: t. inoue, m. gotowda, k. hamada, t. kohzuma, f. yoshizaki, y. sugimura, y. kai
  
  
• 1mnu.pdb. immune system 30-apr-99 1mnu Cd
  Title: unliganded bactericidal antibody against neisseria meningitidis
  Author: j. van den elsen, l. vandeputte-rutten, j. kroon, p. gros
  
  
• 1pfd.pdb. electron transport 05-may-98 1pfd Fe (NMR, 18 structures)
  Title: the solution structure of high plant parsley [2fe-2s] ferredoxin, nmr, 18 structures
  Author: s. -c. im, g. liu, c. luchinat, a. g. sykes, i. bertini
  
  
• 1pwt.pdb. circular permutant 06-oct-98 1pwt (x-ray diffraction; electron diffraction)
  Title: thermodynamic analysis of alpha-spectrin sh3 and two of its circular permutants with different loop lengths: discerning the reasons for rapid folding in proteins
  Author: j. c. martinez, a. r. viguera, r. berisio, m. wilmanns, p. l. mateo, v. v. filmonov, l. serrano
  
  
• 1qav.pdb. synthase 30-mar-99 1qav
  Title: unexpected modes of pdz domain scaffolding revealed by structure of nnos-syntrophin complex
  Author: b. j. hillier, k. s. christopherson, k. e. prehoda, d. s. bredt, w. a. lim
  
  
• 1qau.pdb. synthase 29-mar-99 1qau
  Title: unexpected modes of pdz domain scaffolding revealed by structure of nnos-syntrophin complex
  Author: b. j. hillier, k. s. christopherson, k. e. prehoda, d. s. bredt, w. a. lim
  
  
• 1qby.pdb. deoxyribonucleic acid 27-apr-99 1qby (NMR)
  Title: the solution structure of a bay-region 1r-benz[a]anthracene oxide adduct at the n6 position of adenine of an oligodeoxynucleotide containing the human n-ras codon 61 sequence
  Author: z. li, h. mao, h. -y. kim, p. j. tamura, c. m. harris, t. m. harris, m. p. stone
  
  
• 1qf6.pdb. protein/rna 06-apr-99 1qf6 Zn
  Title: structure of e. coli threonyl-trna synthetase complexed with its cognate trna
  Author: r. sankaranarayanan, a. c. dock-bregeon, b. rees, d. moras
  
  
• 1qge.pdb. hydrolase 23-apr-99 1qge Ca
  Title: new crystal form of pseudomonas glumae (formerly chromobacterium viscosum atcc 6918) lipase
  Author: d. a. lang, p. stadler, a. kovacs, f. paltauf, b. w. dijkstra
  
  
• 1re2.pdb. lysozyme 05-nov-98 1re2
  Title: human lysozyme labelled with two 2',3'-epoxypropyl beta- glycoside of n-acetyllactosamine
  Author: m. muraki, k. harata, n. sugita, k. sato
  
  
• 1sbw.pdb. hydrolase/inhibitor complex 29-apr-99 1sbw Ca
  Title: crystal structure of mung bean inhibitor lysine active fragment complex with bovine beta-trypsin at 1.8a resolution
  Author: q. huang, y. zhu, c. chi, y. tang
  
  
• 1shv.pdb. hydrolase 23-feb-99 1shv
  Title: structure of shv-1 beta-lactamase
  Author: a. p. kuzin, m. nukaga, y. nukaga, a. hujer, r. a. bonomo, j. r. knox
  
  
• 1ssp.pdb. protein/dna 28-apr-99 1ssp
  Title: wild-type uracil-dna glycosylase bound to uracil-containing dna
  Author: s. s. parikh, c. d. mol, g. slupphaug, s. bharati, h. e. krokan, j. a. tainer
  
  
• 2ssp.pdb. protein/dna 28-apr-99 2ssp
  Title: leucine-272-alanine uracil-dna glycosylase bound to abasic site-containing dna
  Author: s. s. parikh, c. d. mol, g. slupphaug, s. bharati, h. e. krokan, j. a. tainer
  
  
• 1sur.pdb. oxidoreductase 01-apr-98 1sur
  Title: phospho-adenylyl-sulfate reductase
  Author: i. sinning, h. savage
  
  
• 5tsw.pdb. lymphokine 22-apr-99 5tsw
  Title: high resolution crystal structure of a human tnf-alpha mutant
  Author: s. -s. cha, j. -s. kim, h. -s. cho, b. -h. oh
  
  
• 1ud7.pdb. ubiquitin 07-apr-99 1ud7 (NMR, 20 structures)
  Title: solution structure of the designed hydrophobic core mutant of ubiquitin, 1d7
  Author: e. c. johnson, g. a. lazar, j. r. desjarlais, t. m. handel
  
  
• 1upu.pdb. transferase 16-apr-98 1upu
  Title: structure of the uracil phosphoribosyltransferase, mutant c128v, bound to product uridine-1-monophosphate (ump)
  Author: m. a. schumacher, d. carter, d. scott, d. roos, b. ullman, r. g. brennan
  
  
• 1vfy.pdb. intracellular transport 26-apr-99 1vfy Zn
  Title: phosphatidylinositol-3-phosphate binding fyve domain of vps27p protein from saccharomyces cerevisiae
  Author: j. h. hurley, s. misra