Garlic Template File

residues.pdb


garlic, free molecular viewer and editor, free molecular visualization program, protein structure, DNA structure, PDB, molecular rendering, biological macromolecule, unix, linux, free software download, open source software, Damir Zucic.
This page contains the template file for garlic. This file contains the template residues, which are used as basic building blocks required to create a new polypeptide. If you don't have the template file, save this HTML file as text and remove all lines which do not contain the string ATOM at the beginning. Don't forget to check the bottom lines.

Recommended locations (listed in search order):

Special template file residues.pdb in the current working directory
User's private template file $HOME/garlic/residues.pdb
System-wide template file /usr/local/lib/garlic/residues.pdb

Garlic uses only one template file. The program first looks in the current working directory, then in $HOME/garlic, and last in /usr/local/lib/garlic.

ATOM      1  N   ALA     1     -20.307  17.277  25.298  1.00  0.18              
ATOM      2  CA  ALA     1     -20.293  16.365  24.112  1.00  0.19              
ATOM      3  C   ALA     1     -18.873  16.278  23.541  1.00  0.20              
ATOM      4  O   ALA     1     -18.190  17.275  23.428  1.00  0.25              
ATOM      5  CB  ALA     1     -21.238  16.916  23.045  1.00  0.24              
ATOM      6  H   ALA     1     -19.804  18.120  25.278  1.00  0.19              
ATOM      7  HA  ALA     1     -20.622  15.383  24.409  1.00  0.18              
ATOM      8  HB  ALA     1     -21.767  17.771  23.437  1.00  1.03              
ATOM      9  HB  ALA     1     -20.670  17.215  22.176  1.00  1.00              
ATOM     10  HB  ALA     1     -21.949  16.156  22.760  1.00  1.09              
ATOM     11  N   ARG     2     -18.461  15.068  23.192  1.00  0.36              
ATOM     12  CA  ARG     2     -17.108  14.831  22.625  1.00  0.36              
ATOM     13  C   ARG     2     -17.200  13.824  21.484  1.00  0.30              
ATOM     14  O   ARG     2     -17.868  12.814  21.598  1.00  0.30              
ATOM     15  CB  ARG     2     -16.196  14.274  23.713  1.00  0.44              
ATOM     16  CG  ARG     2     -15.991  15.334  24.791  1.00  0.76              
ATOM     17  CD  ARG     2     -15.008  14.797  25.834  1.00  1.23              
ATOM     18  NE  ARG     2     -15.444  15.244  27.185  1.00  1.90              
ATOM     19  CZ  ARG     2     -14.847  14.759  28.240  1.00  2.72              
ATOM     20  NH1 ARG     2     -13.673  14.207  28.102  1.00  3.38              
ATOM     21  NH2 ARG     2     -15.449  14.840  29.395  1.00  3.41              
ATOM     22  H   ARG     2     -19.080  14.321  23.320  1.00  0.39              
ATOM     23  HA  ARG     2     -16.702  15.755  22.254  1.00  0.40              
ATOM     24  HB  ARG     2     -16.648  13.394  24.149  1.00  0.54              
ATOM     25  HB  ARG     2     -15.243  14.004  23.284  1.00  0.52              
ATOM     26  HG  ARG     2     -15.593  16.232  24.346  1.00  1.17              
ATOM     27  HG  ARG     2     -16.935  15.559  25.265  1.00  1.11              
ATOM     28  HD  ARG     2     -14.990  13.717  25.799  1.00  1.78              
ATOM     29  HD  ARG     2     -14.018  15.178  25.632  1.00  1.69              
ATOM     30  HE  ARG     2     -16.171  15.891  27.280  1.00  2.34              
ATOM     31  HH1 ARG     2     -13.244  14.162  27.199  1.00  3.40              
ATOM     32  HH1 ARG     2     -13.202  13.832  28.898  1.00  4.14              
ATOM     33  HH2 ARG     2     -16.349  15.268  29.460  1.00  3.47              
ATOM     34  HH2 ARG     2     -15.007  14.474  30.213  1.00  4.18              
ATOM     35  N   ASN     3     -16.516  14.122  20.389  1.00  0.23              
ATOM     36  CA  ASN     3     -16.511  13.242  19.206  1.00  0.22              
ATOM     37  C   ASN     3     -15.108  13.209  18.611  1.00  0.21              
ATOM     38  O   ASN     3     -14.478  14.235  18.461  1.00  0.29              
ATOM     39  CB  ASN     3     -17.499  13.783  18.172  1.00  0.25              
ATOM     40  CG  ASN     3     -18.879  13.944  18.814  1.00  0.28              
ATOM     41  OD1 ASN     3     -19.878  13.516  18.270  1.00  1.09              
ATOM     42  ND2 ASN     3     -18.984  14.560  19.961  1.00  1.16              
ATOM     43  H   ASN     3     -16.007  14.953  20.385  1.00  0.26              
ATOM     44  HA  ASN     3     -16.802  12.256  19.501  1.00  0.22              
ATOM     45  HB  ASN     3     -17.163  14.742  17.812  1.00  0.27              
ATOM     46  HB  ASN     3     -17.571  13.097  17.340  1.00  0.29              
ATOM     47  HD2 ASN     3     -19.865  14.666  20.382  1.00  1.18              
ATOM     48  HD2 ASN     3     -18.188  14.915  20.404  1.00  1.98              
ATOM     49  N   ASP     4     -14.646  12.011  18.281  1.00  0.22              
ATOM     50  CA  ASP     4     -13.290  11.823  17.688  1.00  0.23              
ATOM     51  C   ASP     4     -13.353  10.783  16.560  1.00  0.26              
ATOM     52  O   ASP     4     -13.923   9.723  16.723  1.00  0.37              
ATOM     53  CB  ASP     4     -12.317  11.360  18.770  1.00  0.24              
ATOM     54  CG  ASP     4     -12.487   9.860  19.000  1.00  0.34              
ATOM     55  OD1 ASP     4     -13.592   9.399  18.774  1.00  0.30              
ATOM     56  OD2 ASP     4     -11.499   9.262  19.390  1.00  0.57              
ATOM     57  H   ASP     4     -15.232  11.245  18.441  1.00  0.25              
ATOM     58  HA  ASP     4     -12.947  12.761  17.282  1.00  0.25              
ATOM     59  HB  ASP     4     -11.302  11.560  18.460  1.00  0.28              
ATOM     60  HB  ASP     4     -12.519  11.886  19.691  1.00  0.29              
ATOM     61  N   CYS     5     -12.755  11.118  15.426  1.00  0.19              
ATOM     62  CA  CYS     5     -12.735  10.212  14.247  1.00  0.18              
ATOM     63  C   CYS     5     -11.387  10.282  13.528  1.00  0.17              
ATOM     64  O   CYS     5     -10.854  11.350  13.300  1.00  0.22              
ATOM     65  CB  CYS     5     -13.830  10.645  13.279  1.00  0.21              
ATOM     66  SG  CYS     5     -13.702  12.314  12.591  1.00  0.48              
ATOM     67  H   CYS     5     -12.320  11.996  15.387  1.00  0.23              
ATOM     68  HA  CYS     5     -12.923   9.205  14.564  1.00  0.20              
ATOM     69  HB  CYS     5     -13.843   9.950  12.454  1.00  0.29              
ATOM     70  HB  CYS     5     -14.779  10.571  13.783  1.00  0.36              
ATOM     71  HG  CYS     5     -14.465  12.816  12.884  1.00  1.05              
ATOM     72  N   GLN     6     -10.853   9.121  13.180  1.00  0.36              
ATOM     73  CA  GLN     6      -9.537   9.034  12.469  1.00  0.44              
ATOM     74  C   GLN     6      -9.597   7.976  11.351  1.00  0.45              
ATOM     75  O   GLN     6     -10.108   6.893  11.547  1.00  0.58              
ATOM     76  CB  GLN     6      -8.455   8.664  13.479  1.00  0.54              
ATOM     77  CG  GLN     6      -7.073   8.995  12.898  1.00  0.74              
ATOM     78  CD  GLN     6      -6.557  10.290  13.531  1.00  1.23              
ATOM     79  OE1 GLN     6      -6.781  11.372  13.028  1.00  1.93              
ATOM     80  NE2 GLN     6      -5.860  10.221  14.633  1.00  1.76              
ATOM     81  H   GLN     6     -11.351   8.307  13.403  1.00  0.44              
ATOM     82  HA  GLN     6      -9.303   9.992  12.038  1.00  0.52              
ATOM     83  HB  GLN     6      -8.606   9.223  14.392  1.00  0.62              
ATOM     84  HB  GLN     6      -8.513   7.615  13.699  1.00  0.53              
ATOM     85  HG  GLN     6      -6.384   8.193  13.114  1.00  1.07              
ATOM     86  HG  GLN     6      -7.145   9.127  11.830  1.00  0.95              
ATOM     87  HE2 GLN     6      -5.521  11.040  15.049  1.00  2.25              
ATOM     88  HE2 GLN     6      -5.674   9.349  15.042  1.00  2.11              
ATOM     89  N   GLU     7      -9.064   8.328  10.190  1.00  0.29              
ATOM     90  CA  GLU     7      -9.049   7.403   9.010  1.00  0.28              
ATOM     91  C   GLU     7      -7.686   7.419   8.299  1.00  0.26              
ATOM     92  O   GLU     7      -7.148   8.467   8.000  1.00  0.35              
ATOM     93  CB  GLU     7     -10.129   7.836   8.034  1.00  0.35              
ATOM     94  CG  GLU     7     -11.459   7.206   8.446  1.00  0.41              
ATOM     95  CD  GLU     7     -12.574   7.746   7.549  1.00  0.87              
ATOM     96  OE1 GLU     7     -12.323   8.763   6.924  1.00  1.57              
ATOM     97  OE2 GLU     7     -13.617   7.109   7.538  1.00  1.56              
ATOM     98  H   GLU     7      -8.674   9.224  10.127  1.00  0.32              
ATOM     99  HA  GLU     7      -9.262   6.412   9.338  1.00  0.30              
ATOM    100  HB  GLU     7     -10.214   8.903   8.055  1.00  0.38              
ATOM    101  HB  GLU     7      -9.865   7.519   7.035  1.00  0.38              
ATOM    102  HG  GLU     7     -11.405   6.132   8.340  1.00  0.61              
ATOM    103  HG  GLU     7     -11.679   7.452   9.475  1.00  0.66              
ATOM    104  N   GLY     8      -7.151   6.234   8.041  1.00  0.56              
ATOM    105  CA  GLY     8      -5.835   6.094   7.357  1.00  0.58              
ATOM    106  C   GLY     8      -5.892   4.945   6.343  1.00  0.54              
ATOM    107  O   GLY     8      -6.415   3.885   6.628  1.00  0.51              
ATOM    108  H   GLY     8      -7.651   5.435   8.316  1.00  0.81              
ATOM    109  HA  GLY     8      -5.598   7.013   6.848  1.00  0.65              
ATOM    110  HA  GLY     8      -5.077   5.885   8.095  1.00  0.56              
ATOM    111  N   HIS     9      -5.343   5.186   5.162  1.00  0.28              
ATOM    112  CA  HIS     9      -5.323   4.163   4.075  1.00  0.29              
ATOM    113  C   HIS     9      -3.961   4.180   3.378  1.00  0.30              
ATOM    114  O   HIS     9      -3.437   5.233   3.066  1.00  0.50              
ATOM    115  CB  HIS     9      -6.415   4.486   3.051  1.00  0.34              
ATOM    116  CG  HIS     9      -7.790   4.408   3.717  1.00  0.36              
ATOM    117  ND1 HIS     9      -8.354   5.354   4.314  1.00  0.43              
ATOM    118  CD2 HIS     9      -8.677   3.349   3.788  1.00  0.46              
ATOM    119  CE1 HIS     9      -9.496   5.008   4.752  1.00  0.50              
ATOM    120  NE2 HIS     9      -9.788   3.742   4.463  1.00  0.50              
ATOM    121  H   HIS     9      -4.942   6.069   5.014  1.00  0.33              
ATOM    122  HA  HIS     9      -5.501   3.186   4.494  1.00  0.30              
ATOM    123  HB  HIS     9      -6.264   5.483   2.663  1.00  0.36              
ATOM    124  HB  HIS     9      -6.371   3.778   2.237  1.00  0.41              
ATOM    125  HD1 HIS     9      -7.966   6.246   4.430  1.00  0.51              
ATOM    126  HD2 HIS     9      -8.513   2.366   3.373  1.00  0.57              
ATOM    127  HE1 HIS     9     -10.157   5.667   5.297  1.00  0.62              
ATOM    128  N   ILE    10      -3.412   2.996   3.147  1.00  0.20              
ATOM    129  CA  ILE    10      -2.084   2.856   2.475  1.00  0.22