Powerful Visualization
This page gives you a survey of Diamond's capabilities for the graphical
representation of molecular or crystal structures.
Basic models
This illustration on the right compares four representations of the same
structure picture [1] using wire (upper left), sticks (lower left),
ball-and-stick (upper right), and space-filling model (lower right).
Both ball-and-stick and wire model can be superimposed with a transparent
space-filling-model:
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Polyhedra and thermal ellipsoids
Basing on the standard model (the ball-and-stick model), anisotropic
displacement parameters can be visualized as thermal ellipsoids, and
the coordinations of atoms may be represented by coordination polyhedra.
Polyhedra and thermal ellipsoids can be mixed in one and the same picture!
The left one of the two pictures below shows a rendered representation with
transparent polyhedra, whereas the right one is a typical ORTEP-like
representation showing the axes of the ellipsoids, together with thick
tapered bonds and shading edge to enhance the three-dimensional impression [2]:
References:
[1] Name: biphenyl-2-carboxylic acid
Authors: Dobson, Allison J., Gerkin, Roger E.
Title: Biphenyl-2-carboxylic Acid: a Layered Structure
Journal: Acta Cryst. (1998). C54, 795 - 798
[2] Name: mu-Oxo-bis[dichlorooxo(trimethylphosphine-P)(trimethylphosphine oxide-O)molybdenum(V)] diethyl ether hemisolvate
Authors: F. A. Cotton, L. M. Daniels and S. Herrero
Journal: Acta Cryst. (1999), C55, CIF Access Papers Section: IUC9900018
[3] Authors: van der Zeijden, Adolphus A. H., Mattheis, Chris, Fröhlich, Roland
Title: [1,2-Di(methoxyethyl)-h5-cyclopentadienyl]trichlorozirconium(IV)
Journal: Acta Cryst. (1998). C54, 458 - 460
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