3.3- Solving the structure

 

The choice of the method (direct, Patterson) is suggested by the presence or not of "heavy" atoms.


 
 
 
 


 
 


Na2C2O4


 
 
 
 

Results
 
 

OVERLAP is easy to run :


 
 

Results from different datasets.


[Pd(NH3)4]Cr2O7

The PATT option of SHELXS86 proposes two atoms :
Pd at 0,0,0 coordinates and Cr at 0,0,0.5.

Should be two palladium atoms sites.

A first refinement (with SHELX76), leads to a result quite unsatisfying with R = 0.62.
 

2 peaks clearly distinct in weight which could be associated with 2 Cr atoms.

This hypothesis is tested with SHELX76.

The reliability factor goes down to 35%.

Next Fourier difference synthesis.

And what would have given the direct methods ?
Application to the 1054 hkl,
of which probably no more than 250 are more or less well estimated,
proposes randomly the 4 heavy atom sites (2 Pd + 2 Cr)
at the head of the list and evenmore !


t-AlF3

The brute force consisting in the SHELXS-97 application to the whole dataset gave a list of 15 atom sites.

Examining this list by a structure drawing program (STRUVIR) revealed immediately that the 11 first atom sites described completely a new MX3 corner sharing 3D network.

Where is the merit of the researcher ?
Thanks to G. Sheldrick !


beta-BaAlF5

    X in OVERLAP       Dataset      R(%)SHELX76
   0                1387            36
   0.01             1099            51
   0.02              866            39
   0.03              691            39
   0.04              522            46
   0.05              427            46
   0.06              338            42
Curiously, the best proposition (R = 36 %) is obtained
from the whole dataset.
 

SHELXS-97 proposition.
 

SHELX76 refinement result.
 

A structure drawing is very convincing that a large part of the beta-BaAlF5 structure has been obtained :


 
 

The next step will be obviously to apply the Rietveld method.
 

Solving the structure from the X-ray data was much easier.
 

The two barium atoms only had to be located.






Cimetidine C10H16N6S
 
 

The 924 extracted reflections are put into SHELXS-97,
applying the direct methods by the "brute force".
 

The resulting top 17 peaks are introduced into SHELXL
for a refinement against a reduced dataset
 

A very encouraging R1 ~ 18% was obtained allowing to go further.